Heterochromatin, histone modifications, and nuclear architecture in disease vectors

Current Opinion in Insect Science

Volumn 10, Issue , 2015, Pages 110-117

  Sharakhov, Igor V ^a   Sharakhova, Maria V ^a,b  

^a VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

^b TOMSK STATE UNIVERSITY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84930941863     PISSN: 22145745     EISSN: 22145753     Source Type: Journal    
DOI: 10.1016/j.cois.2015.05.003     Document Type: Review

References (60)

1. P. Gabrieli, A. Smidler, and F. Catteruccia Engineering the control of mosquito-borne infectious diseases Genome Biol 15 2014 535
2. E. Gómez-Díaz, M. Jorda, M.A. Peinado, and A. Rivero Epigenetics of host-pathogen interactions: the road ahead and the road behind PLoS Pathog 8 2012 e1003007
3. A. Molla-Herman, N.R. Matias, and J.-R. Huynh Chromatin modifications regulate germ cell development and transgenerational information relay Curr Opin Insect Sci 1 2014 10 18
4. R. Mtreirek, N. Gueguen, S. Jensen, E. Brasset, and C. Vaury Drosophila heterochromatin: structure and function Curr Opin Insect Sci 1 2014 19 24
5. W.A. Hoeijmakers, H.G. Stunnenberg, and R. Bartfai Placing the Plasmodium falciparum epigenome on the map Trends Parasitol 28 2012 486 495
6. S. Contrino, R.N. Smith, D. Butano, A. Carr, F. Hu, R. Lyne, K. Rutherford, A. Kalderimis, J. Sullivan, and S. Carbon modMine: flexible access to modENCODE data Nucleic Acids Res 40 2012 D1082 D1088
7. V.K. Rakyan, T. Hildmann, K.L. Novik, J. Lewin, J. Tost, A.V. Cox, T.D. Andrews, K.L. Howe, T. Otto, and A. Olek DNA methylation profiling of the human major histocompatibility complex: a pilot study for the human epigenome project PLoS Biol 2 2004 e405
8. P.V. Kharchenko, A.A. Alekseyenko, Y.B. Schwartz, A. Minoda, N.C. Riddle, J. Ernst, P.J. Sabo, E. Larschan, A.A. Gorchakov, and T. Gu Comprehensive analysis of the chromatin landscape in Drosophila melanogaster Nature 471 2011 480 485
9. M. Hochstrasser, D. Mathog, Y. Gruenbaum, H. Saumweber, and J.W. Sedat Spatial organization of chromosomes in the salivary gland nuclei of Drosophila melanogaster J Cell Biol 102 1986 112 123
10. N.A. Kinney, I.V. Sharakhov, and A.V. Onufriev Investigation of the chromosome regions with significant affinity for the nuclear envelope in fruit fly - a model based approach PLoS ONE 9 2014 e91943
11. C.T. Ong, and V.G. Corces CTCF: an architectural protein bridging genome topology and function Nat Rev Genet 15 2014 234 246
12. H. Pickersgill, B. Kalverda, E. de Wit, W. Talhout, M. Fornerod, and B. van Steensel Characterization of the Drosophila melanogaster genome at the nuclear lamina Nat Genet 38 2006 1005 1014
13. E. Heitz Uber alpha- und beta-Heterochromatin sowie Konstanz und Bau der Chromomeren bei Drosophila Biol Zbl 54 1934 588 609
14. C.D. Smith, S. Shu, C.J. Mungall, and G.H. Karpen The Release 5.1 annotation of Drosophila melanogaster heterochromatin Science 316 2007 1586 1591
15. G.J. Filion, J.G. van Bemmel, U. Braunschweig, W. Talhout, J. Kind, L.D. Ward, W. Brugman, I.J. de Castro, R.M. Kerkhoven, and H.J. Bussemaker Systematic protein location mapping reveals five principal chromatin types in Drosophila cells Cell 143 2010 212 224
16. M. Gatti, G. Santini, S. Pimpinelli, and M. Coluzz Fluorescence banding techniques in the identification of sibling species of the Anopheles gambiae complex Heredity 38 1977 105 108
17. S. Bonaccorsi, G. Santini, M. Gatti, S. Pimpinelli, and M. Colluzzi Intraspecific polymorphism of sex chromosome heterochromatin in two species of the Anopheles gambiae complex Chromosoma 76 1980 57 64
18. M.V. Sharakhova, P. George, I.V. Brusentsova, S.C. Leman, J.A. Bailey, C.D. Smith, and I.V. Sharakhov Genome mapping and characterization of the Anopheles gambiae heterochromatin BMC Genomics 11 2010 459
19. M.E. Newton, D.I. Southern, and R.J. Wood X and Y chromosomes of Aedes aegypti (L.) distinguished by Giemsa C-banding Chromosoma 49 1974 41 49
20. V.A. Timoshevskiy, N.A. Kinney, B.S. deBruyn, C. Mao, Z. Tu, D.W. Severson, I.V. Sharakhov, and M.V. Sharakhova Genomic composition and evolution of Aedes aegypti chromosomes revealed by the analysis of physically mapped supercontigs BMC Biol 12 2014 27
21. V.B. Bardella, J.A. da Rosa, and A.L. Vanzela Origin and distribution of AT-rich repetitive DNA families in Triatoma infestans (Heteroptera) Infect Genet Evol 23 2014 106 114
22. J.M. Meyer, T.J. Kurtti, J.P. Van Zee, and C.A. Hill Genome organization of major tandem repeats in the hard tick, Ixodes scapularis Chromosome Res 18 2010 357 370
23. C. Chen, U.G. Munderloh, and T.J. Kurtti Cytogenetic characteristics of cell lines from Ixodes scapularis (Acari: Ixodidae) J Med Entomol 31 1994 425 434
24. F. Panzera, I. Ferrandis, J. Ramsey, P.M. Salazar-Schettino, M. Cabrera, C. Monroy, M.D. Bargues, S. Mas-Coma, J.E. O'Connor, and V.M. Angulo Genome size determination in chagas disease transmitting bugs (hemiptera-triatominae) by flow cytometry Am J Trop Med Hyg 76 2007 516 521
25. B. van Steensel Chromatin: constructing the big picture EMBO J 30 2011 1885 1895
26. X. Jiang, A. Peery, A. Hall, A. Sharma, X.G. Chen, R.M. Waterhouse, A. Komissarov, M.M. Riehl, Y. Shouche, and M.V. Sharakhova Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi Genome Biol 15 2014 459
27. J. Huddleston, S. Ranade, M. Malig, F. Antonacci, M. Chaisson, L. Hon, P.H. Sudmant, T.A. Graves, C. Alkan, and M.Y. Dennis Reconstructing complex regions of genomes using long-read sequencing technology Genome Res 24 2014 688 696
28. R.L. Rogers, J.M. Cridland, L. Shao, T.T. Hu, P. Andolfatto, and K.R. Thornton Landscape of standing variation for tandem duplications in Drosophila yakuba and Drosophila simulans Mol Biol Evol 31 2014 1750 1766
29. S.M. Utturkar, D.M. Klingeman, M.L. Land, C.W. Schadt, M.J. Doktycz, D.A. Pelletier, and S.D. Brown Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences Bioinformatics 30 2014 2709 2716
30. I.V. Sharakhov Protocols for Cytogenetic Mapping of Arthropod Genomes 2015 Taylor & Francis Group, LLC Boca Raton, FL
31. E. Gómez-Díaz, A. Rivero, F. Chandre, and V.G. Corces Insights into the epigenomic landscape of the human malaria vector Anopheles gambiae Front Genet 5 2014 277
32. S. Nakagawa, Y. Sakamoto, H. Okabe, H. Hayashi, D. Hashimoto, N. Yokoyama, R. Tokunaga, K. Sakamoto, H. Kuroki, and K. Mima Epigenetic therapy with the histone methyltransferase EZH2 inhibitor 3-deazaneplanocin A inhibits the growth of cholangiocarcinoma cells Oncol Rep 31 2014 983 988
33. Y.X. Lu, D.L. Denlinger, and W.H. Xu Polycomb repressive complex 2 (PRC2) protein ESC regulates insect developmental timing by mediating H3K27me3 and activating prothoracicotropic hormone gene expression J Biol Chem 288 2013 23554 23564
34. A. Sharma, T.D. Anderson, and I.V. Sharakhov Toxicological assays for testing effects of an epigenetic drug on development, fecundity and survivorship of malaria mosquitoes J Vis Exp 2015 e52041
35. L. Jiang, J. Mu, Q. Zhang, T. Ni, P. Srinivasan, K. Rayavara, W. Yang, L. Turner, T. Lavstsen, and T.G. Theander PfSETvs methylation of histone H3K36 represses virulence genes in Plasmodium falciparum Nature 499 2013 223 227
36. D.E. Neafsey, R.M. Waterhouse, M.R. Abai, S.S. Aganezov, M.A. Alekseyev, J.E. Allen, J. Amon, B. Arca, P. Arensburger, and G. Artemov Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes Science 347 2015 43
37. A.M. Jenkins, and M.A. Muskavitch Evolution of an epigenetic gene ensemble within the genus Anopheles Genome Biol Evol 7 2015 901 915
38. T. Cremer, C. Cremer, and P. Lichter Recollections of a scientific journey published in human genetics: from chromosome territories to interphase cytogenetics and comparative genome hybridization Hum Genet 133 2014 403 416
39. C.R. Brown, and P.A. Silver Transcriptional regulation at the nuclear pore complex Curr Opin Genet Dev 17 2007 100 106
40. H.D. Arican-Goktas, W. Ittiprasert, J.M. Bridger, and M. Knight Differential spatial repositioning of activated genes in Biomphalaria glabrata snails infected with Schistosoma mansoni PLoS Negl Trop Dis 8 2014 e3013
41. B.J. Beliveau, E.F. Joyce, N. Apostolopoulos, F. Yilmaz, C.Y. Fonseka, R.B. McCole, Y. Chang, J.B. Li, T.N. Senaratne, and B.R. Williams Versatile design and synthesis platform for visualizing genomes with oligopaint FISH probes Proc Natl Acad Sci U S A 109 2012 21301 21306
42. P. George, A. Sharma, and I.V. Sharakhov 2D and 3D chromosome painting in malaria mosquitoes J Vis Exp 2014 e51173
43. G. Artemov, S. Bondarenko, G. Sapunov, and V. Stegniy Tissue-specific differences in the spatial interposition of X-chromosome and 3R chromosome regions in the malaria mosquito Anopheles messeae Fall PLoS ONE 10 2015 e0115281
44. P.E. Cook, C.J. McMeniman, and S.L. O'Neill Modifying insect population age structure to control vector-borne disease Adv Exp Med Biol 627 2008 126 140
45. A. Brandt, and A. Vilcinskas The fruit fly Drosophila melanogaster as a model for aging research Adv Biochem Eng Biotechnol 135 2013 63 77
46. A. Brandt, G. Krohne, and J. Grosshans The farnesylated nuclear proteins KUGELKERN and LAMIN B promote aging-like phenotypes in Drosophila flies Aging Cell 7 2008 541 551
47. J. Bozler, H.Q. Nguyen, G.C. Rogers, and G. Bosco Condensins exert force on chromatin-nuclear envelope tethers to mediate nucleoplasmic reticulum formation in Drosophila melanogaster G3 (Bethesda) 5 2014 341 352
48. S. Goodwin, J. Gurtowski, S. Ethe-Sayers, P. Deshpande, M.C. Schatz, and W.R. McCombie Oxford nanopore sequencing and de novo assembly of a eukaryotic genome BioRxiv 2015 10.1101/013490
49. E.F. Kirkness, B.J. Haas, W. Sun, H.R. Braig, M.A. Perotti, J.M. Clark, S.H. Lee, H.M. Robertson, R.C. Kennedy, and E. Elhaik Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle Proc Natl Acad Sci U S A 107 2010 12168 12173
50. A.G. Clark, M.B. Eisen, D.R. Smith, C.M. Bergman, B. Oliver, T.A. Markow, T.C. Kaufman, M. Kellis, W. Gelbart, and V.N. Iyer Evolution of genes and genomes on the Drosophila phylogeny Nature 450 2007 203 218
51. M.D. Adams, S.E. Celniker, R.A. Holt, C.A. Evans, J.D. Gocayne, P.G. Amanatides, S.E. Scherer, P.W. Li, R.A. Hoskins, and R.F. Galle The genome sequence of Drosophila melanogaster Science 287 2000 2185 2195
52. O. Marinotti, G.C. Cerqueira, L.G. de Almeida, M.I. Ferro, E.L. Loreto, A. Zaha, S.M. Teixeira, A.R. Wespiser, E.S.A. Almeida, and A.D. Schlindwein The genome of Anopheles darlingi, the main neotropical malaria vector Nucleic Acids Res 41 2013 7387 7400
53. D. Zhou, D. Zhang, G. Ding, L. Shi, Q. Hou, Y. Ye, Y. Xu, H. Zhou, C. Xiong, and S. Li Genome sequence of Anopheles sinensis provides insight into genetics basis of mosquito competence for malaria parasites BMC Genomics 15 2014 42
54. I. International Glossina Genome Genome sequence of the tsetse fly (Glossina morsitans): vector of African trypanosomiasis Science 344 2014 380 386
55. P. Arensburger, K. Megy, R.M. Waterhouse, J. Abrudan, P. Amedeo, B. Antelo, L. Bartholomay, S. Bidwell, E. Caler, and F. Camara Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics Science 330 2010 86 88
56. J.G. Scott, W.C. Warren, L.W. Beukeboom, D. Bopp, A.G. Clark, S.D. Giers, M. Hediger, A.K. Jones, S. Kasai, and C.A. Leichter Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environment Genome Biol 15 2014 466
57. V. Nene, J.R. Wortman, D. Lawson, B. Haas, C. Kodira, Z.J. Tu, B. Loftus, Z. Xi, K. Megy, and M. Grabherr Genome sequence of Aedes aegypti, a major arbovirus vector Science 316 2007 1718 1723
58. G.I. Giraldo-Calderon, S.J. Emrich, R.M. MacCallum, G. Maslen, E. Dialynas, P. Topalis, N. Ho, S. Gesing, C. VectorBase, and G. Madey VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases Nucleic Acids Res 43 2015 D707 D713
59. U. Willhoeft Fluorescence in situ hybridization of ribosomal DNA to mitotic chromosomes of tsetse flies (Diptera: Glossinidae: Glossina) Chromosome Res 5 1997 262 267
60. M. Hediger, M. Niessen, J. Muller-Navia, R. Nothiger, and A. Dubendorfer Distribution of heterochromatin on the mitotic chromosomes of Musca domestica L. in relation to the activity of male-determining factors Chromosoma 107 1998 267 271