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Volumn 8, Issue 6, 2015, Pages 946-957

Genetic architecture of natural variation in rice chlorophyll content revealed by a genome-wide association study

Author keywords

chlorophyll; Ghd7; GWAS; NAL1; Oryza sativa; pleiotropic effect

Indexed keywords

ORYZA SATIVA;

EID: 84930924593     PISSN: 16742052     EISSN: 17529867     Source Type: Journal    
DOI: 10.1016/j.molp.2015.02.014     Document Type: Article
Times cited : (104)

References (42)
  • 1
    • 67849085011 scopus 로고    scopus 로고
    • Genetic assessment of a mini-core subset developed from the USDA rice genebank
    • H. Agrama, W. Yan, F. Lee, R. Fjellstrom, M.-H. Chen, M. Jia, and A. McClung Genetic assessment of a mini-core subset developed from the USDA rice genebank Crop Sci. 49 2009 1336 1346
    • (2009) Crop Sci. , vol.49 , pp. 1336-1346
    • Agrama, H.1    Yan, W.2    Lee, F.3    Fjellstrom, R.4    Chen, M.-H.5    Jia, M.6    McClung, A.7
  • 2
    • 69749099417 scopus 로고    scopus 로고
    • Fast model-based estimation of ancestry in unrelated individuals
    • D.H. Alexander, J. Novembre, and K. Lange Fast model-based estimation of ancestry in unrelated individuals Genome Res. 19 2009 1655 1664
    • (2009) Genome Res. , vol.19 , pp. 1655-1664
    • Alexander, D.H.1    Novembre, J.2    Lange, K.3
  • 3
    • 0001844190 scopus 로고
    • Copper enzymes in isolated chloroplasts. Polyphenoloxidase in Beta vulgaris
    • D.I. Arnon Copper enzymes in isolated chloroplasts. Polyphenoloxidase in Beta vulgaris Plant Physiol. 24 1949 1 15
    • (1949) Plant Physiol. , vol.24 , pp. 1-15
    • Arnon, D.I.1
  • 5
    • 84859729032 scopus 로고    scopus 로고
    • Fine mapping of a major QTL for flag leaf width in rice, qFLW4, which might be caused by alternative splicing of NAL1
    • M.L. Chen, J. Luo, G.N. Shao, X.J. Wei, S.Q. Tang, Z.H. Sheng, J. Song, and P.S. Hu Fine mapping of a major QTL for flag leaf width in rice, qFLW4, which might be caused by alternative splicing of NAL1 Plant Cell Rep. 31 2012 863 872
    • (2012) Plant Cell Rep. , vol.31 , pp. 863-872
    • Chen, M.L.1    Luo, J.2    Shao, G.N.3    Wei, X.J.4    Tang, S.Q.5    Sheng, Z.H.6    Song, J.7    Hu, P.S.8
  • 8
    • 1542378749 scopus 로고    scopus 로고
    • The genetic basis of stay-green in rice analyzed in a population of doubled haploid lines derived from an indica by japonica cross
    • G. Jiang, Y. He, C. Xu, X. Li, and Q. Zhang The genetic basis of stay-green in rice analyzed in a population of doubled haploid lines derived from an indica by japonica cross Theor. Appl. Genet. 108 2004 688 698
    • (2004) Theor. Appl. Genet. , vol.108 , pp. 688-698
    • Jiang, G.1    He, Y.2    Xu, C.3    Li, X.4    Zhang, Q.5
  • 10
    • 77955791539 scopus 로고    scopus 로고
    • Comparison between QTLs for chlorophyll content and genes controlling chlorophyll biosynthesis and degradation in japonica rice
    • S. Jiang, X. Zhang, Z. Xu, and W. Chen Comparison between QTLs for chlorophyll content and genes controlling chlorophyll biosynthesis and degradation in japonica rice Acta Agron. Sin. 36 2010 376 384
    • (2010) Acta Agron. Sin. , vol.36 , pp. 376-384
    • Jiang, S.1    Zhang, X.2    Xu, Z.3    Chen, W.4
  • 11
    • 84867503015 scopus 로고    scopus 로고
    • Identification and fine mapping of qCTH4, a quantitative trait loci controlling the chlorophyll content from tillering to heading in rice (Oryza sativa L.)
    • S. Jiang, X. Zhang, F. Zhang, Z. Xu, W. Chen, and Y. Li Identification and fine mapping of qCTH4, a quantitative trait loci controlling the chlorophyll content from tillering to heading in rice (Oryza sativa L.) J. Hered. 103 2012 720 726
    • (2012) J. Hered. , vol.103 , pp. 720-726
    • Jiang, S.1    Zhang, X.2    Zhang, F.3    Xu, Z.4    Chen, W.5    Li, Y.6
  • 12
    • 84892438453 scopus 로고    scopus 로고
    • Analysis of quantitative trait loci affecting chlorophyll content of rice leaves in a double haploid population and two backcross populations
    • G. Jiang, J. Zeng, and Y. He Analysis of quantitative trait loci affecting chlorophyll content of rice leaves in a double haploid population and two backcross populations Gene 536 2014 287 295
    • (2014) Gene , vol.536 , pp. 287-295
    • Jiang, G.1    Zeng, J.2    He, Y.3
  • 16
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • H. Li, and R. Durbin Fast and accurate short read alignment with Burrows-Wheeler transform Bioinformatics 25 2009 1754 1760
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 18
    • 84862260334 scopus 로고    scopus 로고
    • Evaluating the effective numbers of independent tests and significant p-value thresholds in commercial genotyping arrays and public imputation reference datasets
    • M. Li, J. Yeung, S. Cherny, and P. Sham Evaluating the effective numbers of independent tests and significant p-value thresholds in commercial genotyping arrays and public imputation reference datasets Hum. Genet. 131 2012 747 756
    • (2012) Hum. Genet. , vol.131 , pp. 747-756
    • Li, M.1    Yeung, J.2    Cherny, S.3    Sham, P.4
  • 20
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C (T)) method
    • K.J. Livak, and T.D. Schmittgen Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C (T)) method Methods 25 2001 402 408
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 21
    • 84861626886 scopus 로고    scopus 로고
    • Evolution and association analysis of Ghd7 in rice
    • L. Lu, W. Yan, W. Xue, D. Shao, and Y. Xing Evolution and association analysis of Ghd7 in rice PLoS One 7 2012 e34021
    • (2012) PLoS One , vol.7 , pp. e34021
    • Lu, L.1    Yan, W.2    Xue, W.3    Shao, D.4    Xing, Y.5
  • 22
    • 53749102865 scopus 로고    scopus 로고
    • Regulation and evolution of chlorophyll metabolism
    • T. Masuda, and Y. Fujita Regulation and evolution of chlorophyll metabolism Photochem. Photobiol. Sci. 7 2008 1131 1149
    • (2008) Photochem. Photobiol. Sci. , vol.7 , pp. 1131-1149
    • Masuda, T.1    Fujita, Y.2
  • 24
    • 78650990972 scopus 로고    scopus 로고
    • Optimizing antennae size to maximize photosynthetic efficiency
    • D.R. Ort, X. Zhu, and A. Melis Optimizing antennae size to maximize photosynthetic efficiency Plant Physiol. 155 2011 79 85
    • (2011) Plant Physiol. , vol.155 , pp. 79-85
    • Ort, D.R.1    Zhu, X.2    Melis, A.3
  • 25
    • 44549085387 scopus 로고    scopus 로고
    • Progress in ideotype breeding to increase rice yield potential
    • S. Peng, G. Khush, P. Virk, Q. Tang, and Y. Zou Progress in ideotype breeding to increase rice yield potential Field Crop Res. 108 2008 32 38
    • (2008) Field Crop Res. , vol.108 , pp. 32-38
    • Peng, S.1    Khush, G.2    Virk, P.3    Tang, Q.4    Zou, Y.5
  • 26
    • 58149107269 scopus 로고    scopus 로고
    • Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice
    • Y. Sato, R. Morita, S. Katsuma, M. Nishimura, A. Tanaka, and M. Kusaba Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice Plant J. 57 2009 120 131
    • (2009) Plant J. , vol.57 , pp. 120-131
    • Sato, Y.1    Morita, R.2    Katsuma, S.3    Nishimura, M.4    Tanaka, A.5    Kusaba, M.6
  • 27
    • 84862991434 scopus 로고    scopus 로고
    • An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations
    • V. Segura, B.J. Vilhjalmsson, A. Platt, A. Korte, U. Seren, Q. Long, and M. Nordborg An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations Nat. Genet. 44 2012 825 830
    • (2012) Nat. Genet. , vol.44 , pp. 825-830
    • Segura, V.1    Vilhjalmsson, B.J.2    Platt, A.3    Korte, A.4    Seren, U.5    Long, Q.6    Nordborg, M.7
  • 28
    • 84856624694 scopus 로고    scopus 로고
    • A quantitative trait locus for chlorophyll content and its association with leaf photosynthesis in rice
    • T. Takai, M. Kondo, M. Yano, and T. Yamamoto A quantitative trait locus for chlorophyll content and its association with leaf photosynthesis in rice Rice 3 2010 172 180
    • (2010) Rice , vol.3 , pp. 172-180
    • Takai, T.1    Kondo, M.2    Yano, M.3    Yamamoto, T.4
  • 30
    • 84871910633 scopus 로고    scopus 로고
    • Ghd7, a pleiotropic gene controlling flag leaf area in rice
    • C. Tan, X. Weng, W. Yan, X. Bai, and Y. Xing Ghd7, a pleiotropic gene controlling flag leaf area in rice Yi Chuan 34 2012 901 906
    • (2012) Yi Chuan , vol.34 , pp. 901-906
    • Tan, C.1    Weng, X.2    Yan, W.3    Bai, X.4    Xing, Y.5
  • 31
    • 84893440887 scopus 로고    scopus 로고
    • Grain number, plant height, and heading date7 is a central regulator of growth, development, and stress response
    • X. Weng, L. Wang, J. Wang, Y. Hu, H. Du, C. Xu, Y. Xing, X. Li, J. Xiao, and Q. Zhang Grain number, plant height, and heading date7 is a central regulator of growth, development, and stress response Plant Physiol. 164 2014 735 747
    • (2014) Plant Physiol. , vol.164 , pp. 735-747
    • Weng, X.1    Wang, L.2    Wang, J.3    Hu, Y.4    Du, H.5    Xu, C.6    Xing, Y.7    Li, X.8    Xiao, J.9    Zhang, Q.10
  • 32
    • 34548697707 scopus 로고    scopus 로고
    • A chlorophyll-deficient rice mutant with impaired chlorophyllide esterification in chlorophyll biosynthesis
    • Z. Wu, X. Zhang, B. He, L. Diao, S. Sheng, J. Wang, X. Guo, N. Su, L. Wang, and L. Jiang A chlorophyll-deficient rice mutant with impaired chlorophyllide esterification in chlorophyll biosynthesis Plant Physiol. 145 2007 29 40
    • (2007) Plant Physiol. , vol.145 , pp. 29-40
    • Wu, Z.1    Zhang, X.2    He, B.3    Diao, L.4    Sheng, S.5    Wang, J.6    Guo, X.7    Su, N.8    Wang, L.9    Jiang, L.10
  • 34
    • 84877705639 scopus 로고    scopus 로고
    • NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll-protein complexes during leaf senescence
    • H. Yamatani, Y. Sato, Y. Masuda, Y. Kato, R. Morita, K. Fukunaga, Y. Nagamura, M. Nishimura, W. Sakamoto, and A. Tanaka NYC4, the rice ortholog of Arabidopsis THF1, is involved in the degradation of chlorophyll-protein complexes during leaf senescence Plant J. 74 2013 652 662
    • (2013) Plant J. , vol.74 , pp. 652-662
    • Yamatani, H.1    Sato, Y.2    Masuda, Y.3    Kato, Y.4    Morita, R.5    Fukunaga, K.6    Nagamura, Y.7    Nishimura, M.8    Sakamoto, W.9    Tanaka, A.10
  • 36
    • 33750011505 scopus 로고    scopus 로고
    • QTL analysis for flag leaf characteristics and their relationships with yield and yield traits in rice
    • B. Yue, W. Xue, L. Luo, and Y. Xing QTL analysis for flag leaf characteristics and their relationships with yield and yield traits in rice Yi Chuan Xue Bao 33 2006 824 832
    • (2006) Yi Chuan Xue Bao , vol.33 , pp. 824-832
    • Yue, B.1    Xue, W.2    Luo, L.3    Xing, Y.4
  • 37
    • 33749018782 scopus 로고    scopus 로고
    • Rice Chlorina-1 and Chlorina-9 encode ChlD and ChlI subunits of Mg-chelatase, a key enzyme for chlorophyll synthesis and chloroplast development
    • H. Zhang, J. Li, J. Yoo, S. Yoo, S. Cho, H. Koh, H.S. Seo, and N. Paek Rice Chlorina-1 and Chlorina-9 encode ChlD and ChlI subunits of Mg-chelatase, a key enzyme for chlorophyll synthesis and chloroplast development Plant Mol. Biol. 62 2006 325 327
    • (2006) Plant Mol. Biol. , vol.62 , pp. 325-327
    • Zhang, H.1    Li, J.2    Yoo, J.3    Yoo, S.4    Cho, S.5    Koh, H.6    Seo, H.S.7    Paek, N.8
  • 39
    • 84906254938 scopus 로고    scopus 로고
    • LSCHL4 from japonica cultivar, which is allelic to NAL1, increases yield of indica super rice 93-11
    • G. Zhang, S. Li, L. Wang, W.J. Ye, D.L. Zeng, Y.C. Rao, Y.L. Peng, J. Hu, Y.L. Yang, and J. Xu LSCHL4 from japonica cultivar, which is allelic to NAL1, increases yield of indica super rice 93-11 Mol. Plant 7 2014 1350 1364
    • (2014) Mol. Plant , vol.7 , pp. 1350-1364
    • Zhang, G.1    Li, S.2    Wang, L.3    Ye, W.J.4    Zeng, D.L.5    Rao, Y.C.6    Peng, Y.L.7    Hu, J.8    Yang, Y.L.9    Xu, J.10
  • 42
    • 77952533806 scopus 로고    scopus 로고
    • Improving photosynthetic efficiency for greater yield
    • X. Zhu, S. Long, and D.R. Ort Improving photosynthetic efficiency for greater yield Annu. Rev. Plant Biol. 61 2010 235 261
    • (2010) Annu. Rev. Plant Biol. , vol.61 , pp. 235-261
    • Zhu, X.1    Long, S.2    Ort, D.R.3


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