A core collection and mini core collection of Oryza sativa L. in China

Theoretical and Applied Genetics

Volumn 122, Issue 1, 2011, Pages 49-61

  Zhang, Hongliang ^a   Zhang, Dongling ^a   Wang, Meixing ^a   Sun, Junli ^a   Qi, Yongwen ^a   Li, Jinjie ^a   Wei, Xinghua ^b   Han, Longzhi ^c   Qiu, Zongen ^c   Tang, Shengxiang ^b   Li, Zichao ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

^b CHINA NATIONAL RICE RESEARCH INSTITUTE   (China)

^c INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

[No Author keywords available]

Indexed keywords

POPULATION STATISTICS;

GENETIC DIVERSITY; GENETIC RESOURCES; GENETIC VARIATION; GERMPLASM COLLECTIONS; NATURAL VARIATION; PHENOTYPIC VARIATIONS; SAMPLING SCHEMES; SAMPLING STRATEGIES;

GENES;

ORYZA SATIVA;

EID: 78651096904     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-010-1421-7     Document Type: Article

References (38)

1. Allard RW (1992) Predictive methods for germplasm identification. In: Stalker HT, Murphy JP (eds) Plant breeding in the 1990's. CAB International, Wallingford, pp 119-146.
2. Bataillon TM, David JL, Schoen DJ (1996) Neutral genetic markers and conservation genetics: simulated germplasm collections. Genetics 144: 409-417.
3. Bisht IS, Mahajan RK, Lokknathan TR, Agrawal RC (1998) Diversity in Indian sesame collection and stratification of germplasm accessions in different diversity groups. Genet Resour Crop Evol 45: 325-335.
4. Brown AHD (1978) Isozymes, plant population genetic structure and genetic conservation. Theor Appl Genet 52: 145-157.
5. Brown AHD (1989a) The case for core collections. In: Brown AHD, Frankel OH, Marshall DR, Williams JT (eds) The use of plant genetic resources. Cambridge University Press, Cambridge, pp 136-156.
6. Brown AHD (1989b) Core collections: a practical approach to genetic resources management. Genome 31: 818-824.
7. Charmet G, Balfourier F (1995) The use of geostatistics for sampling a core collection of perennial ryegrass populations. Genet Resour Crop Evol 42: 303-309.
8. Crossa J, Hernandez M, Bretting P, Eberhart SA, Taba S (1993) Statistical genetic considerations for maintaining germplasm collections. Theor Appl Genet 86: 637-678.
9. Ellis PR, Pink DAC, Phelps K, Jukes PL, Breeds SE, Pinnegar AE (1998) Evaluation of a core collection of Brassica oleracea accessions for resistance to Brevicoryne brassicae, the cabbage aphid. Euphytica 103: 149-160.
10. Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
11. FAO (1997) Report on the State of the World's Plant Genetic Resources for Food and Agriculture. Food and Agriculture Organization of the United Nations, Rome.
12. Franco J, Crossa J, Warburton ML, Taba S (2006) Sampling strategies for conserving maize diversity when forming core subsets using genetic markers. Crop Sci 46: 854-864.
13. Frankel OH, Brown AHD (1984) Plant genetic resources today: a critical appraisal. In: Holden JHW, Williams JT (eds) Crop genetic resources: conservation and evaluation. Allen and Unwin, London, pp 249-257.
14. Frankel OH, Brown AHD, Burdon JJ (1995) The conservation of plant biodiversity. Cambridge University Press, UK.
15. Gouesnard B, Bataillon TM, Decoux G, Rozale C, Schoen DJ, David JL (2001) MSTRAT: an algorithm for building germplasm core collections by maximizing allelic or phenotypic richness. J Hered 92: 93-94.
16. Holbrook CC, Timper P, Xue HQ (2000) Evaluation of the core collection approach for identifying resistance to Meloidogyne arenaria in peanut. Crop Sci 40: 1172-1175.
17. Hyams D (2003) CurveExpert 1. 3. A comprehensive curve fitting system for windows. http://curveexpert. webhop. net/.
18. Kashi Y, King DG (2006) Simple sequence repeats as advantageous mutators in evolution. Trends Genet 22: 253-259.
19. Kim KW, Chung HK, Cho GT, Ma KH, Chandrabalan D, Gwag JG, Kim TS, Cho EG, Park YJ (2007) PowerCore: a program applying the advanced M strategy with a heuristic search for establishing core sets. Bioinformatics 23: 2155-2162.
20. Li ZC, Zhang HL, Zeng YW, Yang ZY, Shen SQ, Sun CQ, Wang XK (2002) Studies on sampling strategies for establishment of core collection of rice landrace in Yunnan, China. Genet Resour Crop Evol 49: 67-74.
21. Li ZC, Zhang HL, Cao YS, Qiu ZE, Wei XH, Tang SX, Yu P, Wang XK (2003) Studies on the sampling strategy for primary core collection of Chinese indigence. Acta Agron Sin 29: 20-24.
22. Liu K, Muse S (2004) PowerMarker: new genetic data analysis software, version 2. 7. http://www. powermarker. net/.
23. Malvar RA, Butron A, Alvarez A, Ordas B, Soengas P, Revilla P, Ordas A (2004) Evaluation of the European Union maize landrace core collection for resistance to Sesamia nonagrioides (Lepidoptera: Noctuidae) and Ostrinia nubilalis (Lepidoptera: Crambidae). J Econ Entomol 97: 628-634.
24. Morgan PH, Mercer LP, Flodin NW (1975) A general model for nutritional responses of higher organisms. Proc Natl Acad Sci USA 72: 4327-4331.
25. Noirot M, Hamon S, Anthony F (1996) The principal component scoring: a new method of constituting a core collection using quantitative data. Genet Resour Crop Evol 43: 1-6.
26. Oka HI (1988) Origin of cultivated rice. Jnp. Sci. Soc. Press, Tokyo.
27. Panaud O, Chen XL, McCouch SR (1996) Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.). Mol Gen Genet 252: 597-607.
28. Peeters JP, Martinelli JA (1989) Hierarchical cluster analysis as a tool to manage variation in germplasm collections. Theor Appl Genet 78: 1142-1148.
29. Qi YW (2007) Analysis of the genetic diversity of the rice cultivars (Oryza sativa L.) using SSR and HD1, HD3a gene. PhD Dissertation, China Agricultural University, Beijing.
30. Saghai-Maroof MA, Soliman KM, Jorgensen RA, Allard RW (1984) Ribosomal DNA spacer length polymorphism in barley: mendelian inheritance, chromosomal location and population dynamics. Proc Natl Acad Sci USA 81: 8014-8018.
31. Schoen DJ, Brown AHD (1993) Conservation of allelic richness in wild crop relatives is aided by assessment of genetic markers. Proc Natl Acad Sci USA 90: 10623-10627.
32. Spagnoletti PLZ, Qualset CO (1993) Evaluation of five strategies for obtaining a core subset from a large genetic resource collection of durum wheat. Theor Appl Genet 87: 295-304.
33. Tautz D, Renz M (1984) Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucleic Acids Res 12: 4127-4138.
34. van Hintum ThJL, Brown AHD, Spillane C, Hodgkin T (2000) Core collections of plant genetic resources. IPGRI Technical Bulletin No. 3. International Plant Genetic Resources Institute, Rome, Italy.
35. Wang MX, Zhang HL, Zhang DL, Qi YW, Fan ZL, Li DY, Pan DJ, Cao YS, Qiu ZE, Yu P, Yang QW, Wang XK, Li ZC (2008) Genetic structure of Oryza rufipogon Griff. in China. Heredity 101: 527-535.
36. Yonezawa K, Nomura T, Morishima H (1995) Sampling strategies for use in stratified germplasm collections. In: Hodgkin T, Brown AHD, van Hintum ThJL, Morales EAV (eds) Core collections of plant genetic resources. IPGRI, Wiley, Baffins Lane, pp 35-54.
37. Zhang HL, Sun JL, Wang MX, Liao DQ, Zeng YW, Shen SQ, Yu P, Mu P, Wang XK, Li ZC (2007) Genetic structure and phylogeography of rice landraces in Yunnan, China revealed by SSR. Genome 51: 72-83.
38. Zhang DL, Zhang HL, Wang MX, Sun JL, Qi YW, Wang FM, Wei XH, Han LZ, Wang XK, Li ZC (2009) Genetic structure and differentiation of Oryza sativa L. in China revealed by microsatellites. Theor Appl Genet 119: 1105-1117.