Identification and fine mapping of qCTH4, a quantitative trait loci controlling the chlorophyll content from tillering to heading in rice(Oryza sativa L.)

Journal of Heredity

Volumn 103, Issue 5, 2012, Pages 720-726

  Jiang, Shukun ^a   Zhang, Xijuan ^a   Zhang, Fengming ^a   Xu, Zhengjin ^c   Chen, Wenfu ^c   Li, Yuhua ^b  

^a HEILONGJIANG ACADEMY OF AGRICULTURAL SCIENCES   (China)

^b Northeast Forestry University   (United States)

^c SHENYANG AGRICULTURAL UNIVERSITY   (China)

Author keywords

chlorophyll content; fine mapping; growth stages; rice

Indexed keywords

ALLELE; ARTICLE; CHLOROPHYLL CONTENT; CHROMOSOME 4; CULTIVAR; ELECTROPHORESIS; GENE AMPLIFICATION; GENE IDENTIFICATION; GENE MAPPING; GENOTYPE; HETEROZYGOTE; MOLECULAR CLONING; PHENOTYPIC VARIATION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; QCTH4 GENE LOCUS; QUANTITATIVE ANALYSIS; QUANTITATIVE TRAIT LOCUS; RICE;

ALLELES; CHLOROPHYLL; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; CLONING, MOLECULAR; DNA, PLANT; GENETIC MARKERS; GENOME, PLANT; GENOTYPE; LOD SCORE; MICROSATELLITE REPEATS; ORYZA SATIVA; PHENOTYPE; PHOTOSYNTHESIS; QUANTITATIVE TRAIT LOCI; SEQUENCE ANALYSIS, DNA;

EID: 84867503015     PISSN: 00221503     EISSN: 14657333     Source Type: Journal    
DOI: 10.1093/jhered/ess041     Document Type: Article

References (32)

1. Abdelkhalik AF, Shishido R, Nomura K, Ikehashi H. 2005. QTL-based analysis of leaf senescence in an indica/japonica hybrid in rice (Oryza sativa L.). Theor Appl Genet. 110(7):1226-1235. (Pubitemid 40689316)
2. Ebitani T, Takeuchi Y, Nonoue Y, Yamamoto T, Takeuchi K, Yano M. 2005. Construction and evaluation of chromosome segment substitution lines carrying overlapping chromosome segments of indica rice cultivar 'Kasalath' in a genetic background of japonica elite cultivar 'Koshihikari.' Breed Sci. 55:65-73. (Pubitemid 40413219)
3. International Rice Genome Sequencing Project. 2005. The map-based sequence of the rice genome. Nature. 436:793-800.
4. Ishimaru K, Yano M, Aoki N, Ono K, Hirose T, Lin SY, Monna L, Sasaki T, Ohsugi R. 2001. Toward the mapping of physiological and agronomic characters on a rice function map: QTL analysis and comparison between QTLs and expressed sequence tags. Theor Appl Genet. 102:793-800. (Pubitemid 32532676)
5. Jiang H, Li M, Liang N, Yan H, Wei Y, Xu X, Liu J, Xu Z, Chen F, Wu G. 2007. Molecular cloning and function analysis of the stay green gene in rice. Plant J. 52(2):197-209. (Pubitemid 47537575)
6. Jiang SK, Zhang XJ, Wang JY, Chen WF, Xu ZJ. 2010. Fine mapping of the quantitative trait locus qFLL9 controlling flag leaf length in rice. Euphytica. 176:341-347.
7. Jiang SK, Zhang XJ, Xu ZJ, Chen WF. 2010. Comparison between QTLs for chlorophyll content and genes controlling chlorophyll biosynthesis and degradation in japonica rice. Acta agronomica sinica. 36(3):376-384.
8. Jung KH, Hur J, Ryu CH, Choi Y, Chung YY, Miyao A, Hirochika H, An G. 2003. Characterization of a rice chlorophyll-deficient mutant using the T-DNA gene-trap system. Plant Cell Physiol. 44(5):463-472. (Pubitemid 36708212)
9. Kusaba M, Ito H, Morita R, Iida S, Sato Y, Fujimoto M, Kawasaki S, Tanaka R, Hirochika H, Nishimura M, et al. 2007. Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence. Plant Cell. 19:1362-1375. (Pubitemid 46941659)
10. Liu W, Fu Y, Hu G, Si H, Zhu L, Wu C, Sun Z. 2007. Identification and fine mapping of a thermo-sensitive chlorophyll deficient mutant in rice (Oryza sativa L.). Planta. 226(3):785-795. (Pubitemid 47038025)
11. Murray MG, Thompson WF. 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8:4321-4325.
12. Panaud O, Chen X, McCouch SD. 1996. Development of micro-satellite marker and characterization of sample sequence lengthen polymorphism (SSLP) in rice (Oryza sativa L). Mol Gen Genet. 252:597-607.
13. Peng S, Khush GS, Virk P, Tang Q, Zou Y. 2008. Progress in ideotype breeding to increase yield potential. Field Crops Res. 108:32-38.
14. Takai T, Kondo M, Yano M, Yamamoto T. 2010. A quantitative trait locus for chiorophyll content and its association with leaf photosynthesis in rice. Rice. 3:172-180.
15. Tan L, Li X, Liu F, Sun X, Li C, Zhu Z, Fu Y, Cai H, Wang X, Xie D, et al. 2008. Control of a key transition from prostrate to erect growth in rice domestication. Nat Genet. 40:1360-1364.
16. Temnykh S, DeClerck G, Lukashova A, Lipovich L, Cartinhour S, McCouch S. 2001. Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential. Genome Res. 11:1441-5142.
17. Teng S, Qian Q, Zeng DL, Kunihiro Y, Fujimoto K, Huang DN, Zhu LH. 2004. QTL analysis of leaf photosynthetic rate and related physiological traits in rice (Oryza sativa L.). Euphtyca. 135:1-7. (Pubitemid 38154266)
18. Thomas JA, Jeffrey AC, Atsuko K, David MK. 2005. Regulating the proton budget of higher plant photosynthesis. Proc Natl Acad Sci USA. 102:9709-9713.
19. Tian F, Li DJ, Fu Q, Zhu ZF, Fu YC, Wang XK, Sun CQ. 2006. Construction of introgression lines carrying wild rice (Oryza rufipogon Griff.) segments in cultivated rice (Oryza sativa L.) background and characterization of introgressed segments associated with yield-related traits. Theor Appl Genet. 112:570-580. (Pubitemid 43084744)
20. Tuinstra MR, Ejeta G, Goldsbrough PB. 1997. Heterogeneous inbred family (HIF) analysis: A method for developing nearisogenic lines that differ at quantitative trait loci. Theor Appl Genet. 95:1005-1011. (Pubitemid 27493074)
21. Wang B, Lan T, Wu WR, Li WM. 2003. Mapping of QTLs controlling chlorophyll content in rice. Acta Genetica Sinica. 30(12):1127-1132.
22. Wu Z, Zhang X, He B, Diao L, Sheng S, Wang J, Guo X, Su N, Wang L, Jiang L, et al. Chlorophyll-deficient rice mutant with impaired chlorophyllide esterification in chlorophyll biosynthesis. Plant Physiol. 2007. 145(1):29-40. (Pubitemid 47416474)
23. Xu YB. 2010. Molecular breeding. Wallingford (UK): CAB International.
24. Xu YF, Ookawa T, Ishihara K. 1997. Analysis of the photosynthetic characteristics of the high-yielding rice cultivar Takanari. Jpn J Crop Sci. 66:616-623. (Pubitemid 28056183)
25. Yamanaka N, Watanabe S, Toda K, Hayashi M, Fuchigami H, Takahashi R, Harada K. 2005. Fine mapping of the FT1 locus for soybean flowering time using a residual heterozygous line derived from a recombinant inbred line. Theor Appl Genet. 110:634-639. (Pubitemid 40383380)
26. Yan JQ, Zhu J, He CX, Benmoussa M, Wu P. 1998. Quantitative trait loci analysis for the developmental behavior of tiller number in rice (Oryza sativa L.). Theor Appl Gnent. 97:267-274. (Pubitemid 28371693)
27. Yoo SC, Cho SH, Zhang HT, Paik HC, Lee CH, Li JJ, Yoo JH, Lee BW, Koh HJ, Seo HS, et al. 2007. Quantitative trait loci associated with functional stay-green SUN-SG1 in rice. Mol Cells. 24(1):83-94. (Pubitemid 47554795)
28. Yu B, Lin Z, Li H, Li X, Li J, Wang Y, Zhang X, Zhu Z, Zhai W, Wang X, et al. 2007. TAC1, a major quantitative trait locus controlling tiller angle in rice. Plant J. 52:891-898. (Pubitemid 350157755)
29. Zeng ZB. 1994. Precision mapping of quantitative trait loci. Genetics. 136:1457-1468.
30. Zhang H, Li J, Yoo JH, Yoo SC, Cho SH, Koh HJ, Seo HS, Paek NC. 2006. Rice Chlorina-1 and Chlorina-9 encode ChlD and ChlI subunits of Mg-chelatase, a key enzyme for chlorophyll synthesis and chloroplast development. Plant Mol Biol. 62(3):325-337. (Pubitemid 44454910)
31. Zhang Q, Shen BZ, Dai XK, Mei MH, Saghai Maroof MA, Li ZB. 1994. Using bulked extremes and recessive class to map genes for photoperiod-sensitive genic male sterility in rice. Proc Natl Acad Sci USA. 91:8675-8679.
32. Zhu J. 1995. Analysis of conditional effects and variance components in developmental genetics. Genetics. 141(4):1633-1639.