Haplotypes and variable position detection in the mitochondrial DNA coding region encompassing nucleotide positions 10,716-11,184

Mitochondrial DNA

Volumn 26, Issue 4, 2015, Pages 544-549

  Hameed, Imad Hadi ^a   Abdulzahra, Ameer Ibrahim ^a   Jebor, Mohammed Abdullah ^a   Kqueen, Cheah Yoke ^b   Ommer, Aamera Jaber ^c  

^a UNIVERSITY OF BABYLON   (Iraq)

^b UNIVERSITY PUTRA MALAYSIA   (Malaysia)

^c MINISTRY OF HEALTH   (Iraq)

Author keywords

Coding region; Encompassing nucleotide positions from 10,716 to 11,184; Iraq; Mitochondrial DNA; Polymorphic positions

Indexed keywords

MITOCHONDRIAL DNA; NUCLEOTIDE;

ARTICLE; DNA EXTRACTION; DNA STRUCTURE; HAPLOTYPE; HUMAN; MUTATION; PRIORITY JOURNAL; CHEMISTRY; DNA SEQUENCE; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PROCEDURES; SINGLE NUCLEOTIDE POLYMORPHISM;

BASE SEQUENCE; DNA, MITOCHONDRIAL; HAPLOTYPES; HUMANS; MOLECULAR SEQUENCE DATA; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ANALYSIS, DNA;

EID: 84930863544     PISSN: 19401736     EISSN: 19401744     Source Type: Journal    
DOI: 10.3109/19401736.2013.869675     Document Type: Article

References (20)

1. Al-Zahery N, Pala M, Battaglia V, Grugni V, Hamod MA, Kashani BH, Olivieri A, et al. (2011). In search of the genetic footprints of Sumerians: A survey of Y-chromosome and mtDNA variation in the Marsh Arabs of Iraq. BMC Evol Biol 11:288.
2. Al-Zahery N, Semino O, Benuzzi G, Magri C, Passarino G, Torroni A, Santachiara-Benerecetti AS. (2003). Y-chromosome and mtDNA polymorphisms in Iraq, a crossroad of the early human dispersal and of post-Neolithic migrations. Mol Phylogenetics Evol 28:458-72.
3. Anderson S, Bankier AT, Barrell BG, De Bruijn MH, Coulson AR, Drouin J. (1981). Sequence and organization of the human mitochondrial genome. Nature 290:457-65.
4. Brown JR, Bechenbach AT, Smith MJ. (1995). Intraspecific DNA sequence variation of the mitochondrial control region of white sturgeon (Acipenser transmontanus). Mol Biol Evol 10:326-41.
5. Brown WM, Prager EM, Wang A. (1982). Mitochondrial DNA sequences of primates: Tempo and mode of evolution. J Mol Evol 18:225-39.
6. David HW, Jonathan K, Arthur JE, Bruce B. (2013). Validation of the PLEX-IDTM mass spectrometry mitochondrial DNA assay. Int J Leg Med 127:277-86.
7. Giulietta Di B, Ivane SN, Michele S, Lorendana N. (2000). Mitochondrial DNA sequences in prehistoric human remains from the Alps. Eur J Hum Genet 8:669-77.
8. Helgason A, Hrafnkelsson B, Gulcher JR, Ward R, Stefánsson K. (2003). Population wide coalescent analysis of Icelandic matrilineal and patrilineal genealogies: Evidence for a faster evolutionary rate of mtDNA lineages than Y chromosomes. Am J Hum Genet 72: 1370-88.
9. Holland MM, McQuillan MR, O?Hanlon KA. (2011). Second generation sequencing allows for mtDNA mixture deconvolution and high resolution detection of heteroplasmy. Croat Med J 52:299-313.
10. Holland MM, Parsons TJ. (1999). Mitochondrial DNA sequence analysis - Validation and use for forensic casework. Forensic Sci Revi 11:21-48.
11. Homer N, Szelinger S, Redman M, Duggan D, Tembe W, Muehling J. (2008). Resolving individuals contributing trace amounts of DNA to highly complex mixtures using high-density SNP genotyping microarrays. PLoS Genet 4:e1000167.
12. Ingman M, Gyllensten U. (2003). Mitochondrial genome variation and evolutionary history of Australian and New Guinean aborigines. Genome Res 13:1600-6.
13. Jones DA. (1972). Blood samples: Probability of discrimination. J Forensic Sci Soc 12:355-8.
14. Kraytsberg Y, Schwartz M, Brown TA, Ebralidse K, Kunz WS, Clayton DA, Vissing J, Khrapko K. (2004). Recombination of human mitochondrial DNA. Science 304:981-9.
15. Mitomap: A human mitochondrial genome database; 2013. Available at: http://www.mitomap.org
16. SEQUENCHER™ 4.7 User Manual for Windows © (1991-2007). Gene Codes Corporation, Inc. All rights reserved Available at: http://sequencher.bio.indiana.edu.
17. Sosa MX, Sivakumar IKA, Maragh S, Veeramachaneni V, Hariharan R. (2012). Next-generation sequencing of human mitochondrial reference genomes uncovers high heteroplasmy frequency. PLoS Comput Biol 8: e1002737.
18. Tzen C, Wu T, Liu H. (2001). Sequence polymorphism in the coding region of the mitochondrial genome encompassing position 8389-8865. Forensic Sci Intl 120:204-9.
19. Ukhee C, Hwan YL, Ji-Eun Y. (2005). Mitochondrial DNA CA dinucleotide repeats in Koreans: The presence of length heteroplasmy. Int J Legal Med 119:50-3.
20. Yang Z, Yoder AD. (1999). Estimation of the transition/transversion rate bias and species sampling. J Mol Evol 48:274-83.