Positive selection drives preferred segment combinations during influenza virus reassortment

Molecular Biology and Evolution

Volumn 32, Issue 6, 2015, Pages 1519-1532

  Zeldovich, Konstantin B ^a   Liu, Ping ^a   Renzette, Nicholas ^a   Foll, Matthieu ^b,c   Pham, Serena T ^a   Venev, Sergey V ^a   Gallagher, Glen R ^a   Bolon, Daniel N ^a   Kurt Jones, Evelyn A ^a   Jensen, Jeffrey D ^b,c   Caffrey, Daniel R ^a   Schiffer, Celia A ^a   Kowalik, Timothy F ^a   Wang, Jennifer P ^a   Finberg, Robert W ^a  

^a UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

^b EPFL   (Switzerland)

^c SWISS INSTITUTE OF BIOINFORMATICS   (Switzerland)

Author keywords

deep sequencing; evolution; influenza; mutations; reassortment

Indexed keywords

HEMAGGLUTININ; NUCLEOPROTEIN; INFLUENZA VIRUS HEMAGGLUTININ;

ARTICLE; COMPARATIVE STUDY; CONTROLLED STUDY; EFFECTIVE POPULATION SIZE; GENE FREQUENCY; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC DRIFT; GENETIC REASSORTMENT; GENETIC STRAIN; GENOTYPE; IN VITRO STUDY; INFLUENZA VIRUS; INFLUENZA VIRUS A H1N1; INFLUENZA VIRUS A H1N2; INFLUENZA VIRUS A H3N2; KINETICS; NATURAL SELECTION; NOISE; NONHUMAN; NUCLEOTIDE SEQUENCE; PLAQUE ASSAY; PROMOTER REGION; QUANTITATIVE ANALYSIS; REVERSE GENETICS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; VIRUS CULTURE; VIRUS GENOME; ANIMAL; BIOLOGY; DOG; GENETIC SELECTION; GENETICS; HIGH THROUGHPUT SEQUENCING; INFLUENZA A VIRUS (H1N1); INFLUENZA A VIRUS (H1N2); INFLUENZA A VIRUS (H3N2); INFLUENZAVIRUS A; LIMIT OF DETECTION; MDCK CELL LINE; MOLECULAR EVOLUTION;

INFLUENZA A VIRUS; ORTHOMYXOVIRIDAE;

ANIMALS; COMPUTATIONAL BIOLOGY; DOGS; EVOLUTION, MOLECULAR; GENE FREQUENCY; GENOME, VIRAL; GENOTYPE; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; INFLUENZA A VIRUS, H1N1 SUBTYPE; INFLUENZA A VIRUS, H1N2 SUBTYPE; INFLUENZA A VIRUS, H3N2 SUBTYPE; INFLUENZAVIRUS A; LIMIT OF DETECTION; MADIN DARBY CANINE KIDNEY CELLS; NUCLEOPROTEINS; REASSORTANT VIRUSES; SELECTION, GENETIC; SEQUENCE ANALYSIS, RNA;

EID: 84930690077     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msv044     Document Type: Article

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