Range and niche shifts in response to past climate change in the desert horned lizard Phrynosoma platyrhinos

Ecography

Volumn 39, Issue 5, 2016, Pages 437-448

  Jezkova, Tereza ^a,b   Jaeger, Jef R ^a   Oláh Hemmings, Viktória ^a   Jones, K Bruce ^c   Lara Resendiz, Rafael A ^d   Mulcahy, Daniel G ^e   Riddle, Brett R ^a  

^a UNIVERSITY OF NEVADA   (United States)

^b The University of Arizona   (United States)

^c DESERT RESEARCH INSTITUTE   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e SMITHSONIAN INSTITUTION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CLIMATE VARIATION; COMMUNITY RESPONSE; DESERT; ENVIRONMENTAL CONDITIONS; GENETIC ANALYSIS; LAST GLACIAL MAXIMUM; LIZARD; MITOCHONDRIAL DNA; NICHE; PALEOCLIMATE; PHENOTYPIC PLASTICITY; PHYLOGEOGRAPHY; RANGE EXPANSION; ZOOGEOGRAPHY;

GREAT BASIN; MOJAVE DESERT; SONORAN DESERT; UNITED STATES;

PHRYNOSOMA PLATYRHINOS; SQUAMATA;

EID: 84930401918     PISSN: 09067590     EISSN: 16000587     Source Type: Journal    
DOI: 10.1111/ecog.01464     Document Type: Article

References (84)

1. Ackerly, D. 2003a. Canopy gaps to climate change - extreme events, ecology and evolution. - New Phytol. 160: 2-4.
2. Ackerly, D. D. 2003b. Community assembly, niche conservatism, and adaptive evolution in changing environments. - Int. J. Plant Sci. 164: S165-S184.
3. Araújo, M. B. and Guisan, A. 2006. Five (or so) challenges for species distribution modelling. - J. Biogeogr. 33: 1677-1688.
4. Arévalo, E. et al. 1994. Mitochondrial DNA sequence divergence and phylogenetic relationships among 8 chromosome races of the Sceloporus grammicus complex (Phrynosomatidae) in central Mexico. - Syst. Biol. 43: 387-418.
5. Bandelt, H. J. et al. 1999. Median-joining networks for inferring intraspecific phylogenies. - Mol. Biol. Evol. 16: 37-48.
6. Blonder, B. et al. 2014. The n-dimensional hypervolume. - Global Ecol. Biogeogr. 23: 595-609.
7. Braconnot, P. et al. 2007. Results of PMIP2 coupled simulations of the Mid-Holocene and Last Glacial Maximum - part 1: experiments and large-scale features. - Clim. Past 3: 261-277.
8. Britten, H. B. and Rust, R. W. 1996. Population structure of a sand dune-obligate beetle, Eusattus muricatus, and its implications for dune management. - Conserv. Biol. 10: 647-652.
9. Broennimann, O. et al. 2007. Evidence of climatic niche shift during biological invasion. - Ecol. Lett. 10: 701-709.
10. Broennimann, O. et al. 2012. Measuring ecological niche overlap from occurrence and spatial environmental data. - Global Ecol. Biogeogr. 21: 481-497.
11. Castoe, T. A. et al. 2007. Phylogeographic structure and historical demography of the western diamondback rattlesnake (Crotalus atrox): a perspective on North American desert biogeography. - Mol. Phylogenet. Evol. 42: 193-212.
12. Coetzee, B. W. T. et al. 2009. Ensemble models predict Important Bird Areas in southern Africa will become less effective for conserving endemic birds under climate change. - Global Ecol. Biogeogr. 18: 701-710.
13. Csuti, B. A. 1979. Patterns of adaptation and variation in the Great Basin kangaroo rat (Dipodomys microps). - Univ. Calif. Publ. Zool. 111: 1-73.
14. Davis, M. B. and Shaw, R. G. 2001. Range shifts and adaptive responses to Quaternary climate change. - Science 292: 673-679.
15. Davis, M. B. et al. 2005. Evolutionary responses to changing climate. - Ecology 86: 1704-1714.
16. Douglas, M. E. et al. 2006. Evolution of rattlesnakes (Viperidae; Crotalus) in the warm deserts of western North America shaped by Neogene vicariance and Quaternary climate change. - Mol. Ecol. 15: 3353-3374.
17. Drummond, A. J. and Rambaut, A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. - BMC Evol. Biol. 7: 214.
18. Drummond, A. J. et al. 2005. Bayesian coalescent inference of past population dynamics from molecular sequences. - Mol. Biol. Evol. 22: 1185-1192.
19. Drummond, A. J. et al. 2007. A rough guide to BEAST 1.4. - < http://beast-mcmc.googlecode.com/files/BEAST14_Manual_6July2007.pdf>.
20. Eiserhardt, W. L. et al. 2013. Dispersal and niche evolution jointly shape the geographic turnover of phylogenetic clades across continents. - Sci. Rep. 3: 1-8.
21. Excoffier, L. et al. 2009. Genetic consequences of range expansions. - Annu. Rev. Ecol. Evol. Syst. 40: 481-501.
22. Galbreath, K. E. et al. 2009. When cold is better: climate-driven elevation shifts yield complex patterns of diversification and demography in an alpine specialist (American pika, Ochotona princeps). - Evolution 63: 2848-2863.
23. Graham, M. R. et al. 2013. Phylogeography of Beck's desert scorpion, Paruroctonus becki, reveals Pliocene diversification in the eastern California Shear Zone and postglacial expansion in the Great Basin Desert. - Mol. Phylogenet. Evol. 69: 502-513.
24. Guisan, A. et al. 2014. Unifying niche shift studies: insights from biological invasions. - Trends Ecol. Evol. 29: 260-269.
25. Hahn, M. W. et al. 2002. Distinguishing between selection and population expansion in an experimental lineage of bacteriophage T7. - Genetics 161: 11-20.
26. Hampe, A. and Petit, R. J. 2005. Conserving biodiversity under climate change: the rear edge matters. - Ecol. Lett. 8: 461-467.
27. Harrison, S. P. 2000. Palaeoenvironmental data sets and model evaluation in PMIP. - In: Braconnot, P. (ed.), Proceedings of the Third PMIP Workshop, pp. 9-25.
28. Hewitt, G. M. 1996. Some genetic consequences of ice ages, and their role in divergence and speciation. - Biol. J. Linn. Soc. 58: 247-276.
29. Hewitt, G. M. 2000. The genetic legacy of the Quaternary ice ages. - Nature 405: 907-913.
30. Hijmans, R. J. et al. 2005. Very high resolution interpolated climate surfaces for global land areas. - Int. J. Climatol. 25: 1965-1978.
31. Hilbe, J. M. 2008. Systat 12.2: an overview. - Am. Stat. 62: 177-178.
32. Hill, M. P. et al. 2012. Understanding niche shifts: using current and historical data to model the invasive redlegged earth mite, Halotydeus destructor. - Divers. Distrib. 18: 191-203.
33. Hill, M. P. et al. 2013. A predicted niche shift corresponds with increased thermal resistance in an invasive mite, Halotydeus destructor. - Global Ecol. Biogeogr. 22: 942-951.
34. Hockett, B. S. 2000. Paleobiogeographic changes at the Pleistocene-Holocene boundary near Pintwater Cave, southern Nevada. - Quat. Res. 53: 263-269.
35. Holt, R. D. et al. 2005. Theoretical models of species' borders: single species approaches. - Oikos 108: 18-27.
36. Hornsby, A. D. and Matocq, M. D. 2012. Differential regional response of the bushy-tailed woodrat (Neotoma cinerea) to late Quaternary climate change. - J. Biogeogr. 39: 289-305.
37. Hostetler, S. W. et al. 2011. Dynamically downscaled climate simulations over North America: methods, evaluation, and supporting documentation for users. - U.S. Geological Survey Open-File Report 2011-1238.
38. Hunter, K. L. et al. 2001. Ploidy race distributions since the Last Glacial Maximum in the North American desert shrub, Larrea tridentata. - Global Ecol. Biogeogr. 10: 521-533.
39. Jackson, S. T. and Overpeck, J. T. 2000. Responses of plant populations and communities to environmental changes of the late Quaternary. - Paleobiology 26: 194-220.
40. Jezkova, T. et al. 2009. Pleistocene impacts on the phylogeography of the desert pocket mouse (Chaetodipus penicillatus). - J. Mammal. 90: 306-320.
41. Jezkova, T. et al. 2011. Niche shifting in response to warming climate after the last glacial maximum: inference from genetic data and niche assessments in the chisel-toothed kangaroo rat (Dipodomys microps). - Global Change Biol. 17: 3486-3502.
42. Jezkova, T. et al. 2015a. Genetic consequences of a post-glacial range expansion in two co-distributed rodents (genus Dipodomys) depend on ecology and genetic marker choice. - Mol. Ecol. 24: 83-97.
43. Jezkova, T. et al. 2015b. Range and niche shifts in response to past climate change in the desert horned lizard Phrynosoma platyrhinos. - Dryad Digital Repository, < http://dx.doi.org/10.5061/dryad.q5b1h >.
44. Jones, K. B. 1995. Phylogeography of the desert horned lizard (Phrynosoma platyrhinos) and the short-horned lizard (Phrynosoma douglassii): patterns of divergence and diversity. - Univ. of Nevada.
45. Kearney, M. et al. 2009. The potential for behavioral thermoregulation to buffer "cold-blooded" animals against climate warming. - Proc. Natl Acad. Sci. USA 106: 3835-3840.
46. Kozak, K. H. and Wiens, J. J. 2006. Does niche conservatism promote speciation? A case study In North American salamanders. - Evolution 60: 2604-2621.
47. Kozak, K. H. and Wiens, J. J. 2010. Accelerated rates of climatic-niche evolution underlie rapid species diversification. - Ecol. Lett. 13: 1378-1389.
48. Lara-Resendiz, R. A. et al. 2014. Thermoregulation during the summer season in the Goode's horned lizard Phrynosoma goodei (Iguania: Phrynosomatidae) in Sonoran Desert. - Amphibia-Reptilia 35: 161-172.
49. Macey, J. R. et al. 1999. Vicariant patterns of fragmentation among gekkonid lizards of the genus Teratoscincus produced by the Indian collision: a molecular phylogenetic perspective and an area cladogram for central Asia. - Mol. Phylogenet. Evol. 12: 320-332.
50. McCormack, J. E. et al. 2010. Does niche divergence accompany allopatric divergence in Aphelocoma jays as predicted under ecological speciation? Insights from tests with niche models. - Evolution 64: 1231-1244.
51. Miller, M. P. 2005. Alleles In Space (AIS): computer software for the joint analysis of interindividual spatial and genetic information. - J. Hered. 96: 722-724.
52. Monasterio, C. et al. 2009. The effects of thermal biology and refuge availability on the restricted distribution of an alpine lizard. - J. Biogeogr. 36: 1673-1684.
53. Mulcahy, D. G. 2008. Phylogeography and species boundaries of the western North American nightsnake (Hypsiglena torquata): revisiting the subspecies concept. - Mol. Phylogenet. Evol. 46: 1095-1115.
54. Mulcahy, D. G. et al. 2006. Phylogeography of the flat-tailed horned lizard (Phrynosoma mcallii) and systematics of the P. mcallii-platyrhinos mtDNA complex. - Mol. Ecol. 15: 1807-1826.
55. Murphy, R. W. et al. 2006. Conservation genetics, evolution and distinct population segments of the Mojave fringe-toed lizard, Uma scoparia. - J. Arid Environ. 67: 226-247.
56. Newton, M. A. and Raftery, A. E. 1994. Approximate bayesian inference with the weighted likelihood bootstrap. - J. R. Stat. Soc. B 56: 3-48.
57. Nogues-Bravo, D. 2009. Predicting the past distribution of species climatic niches. - Global Ecol. Biogeogr. 18: 521-531.
58. Olson, D. M. et al. 2001. Terrestrial ecoregions of the worlds: a new map of life on Earth. - Bioscience 51: 933-938.
59. Otto-Bliesner, B. L. et al. 2006. Last Glacial Maximum and Holocene climate in CCSM3. - J. Clim. 19: 2526-2544.
60. Pavlik, B. M. 1989. Phytogeography of sand dunes in the Great Basin and Mojave deserts. - J. Biogeogr. 16: 227-238.
61. Pearman, P. B. et al. 2007. Niche dynamics in space and time. - Trends Ecol. Evol. 23: 149-158.
62. Petersen, M. J. 2013. Evidence of a climatic niche shift following North American introductions of two crane flies (Diptera; genus Tipula). - Biol. Invasions 15: 885-897.
63. Peterson, A. T. and Nyari, A. S. 2008. Ecological niche conservatism and Pleistocene refugia in the thrush-like mourner, Schiffornis sp., in the neotropics. - Evolution 62: 173-183.
64. Peterson, A. T. et al. 2004. Reconstructing the Pleistocene geography of the Aphelocoma jays (Corvidae). - Divers. Distrib. 10: 237-246.
65. Pianka, E. R. and Parker, W. S. 1975. Ecology of horned lizards: review with special reference to Phrynosoma platyrhinos. - Copeia 1975: 141-162.
66. Polzin, T. and Daneshmand, S. V. 2003. On Steiner trees and minimum spanning trees in hypergraphs. - Op. Res. Lett. 31: 12-20.
67. Rambaut, A. and Drummond, A. J. 2007. Tracer v1.4. - < http://beast.bio.ed.ac.uk/Tracer >.
68. Rodder, D. and Lotters, S. 2009. Niche shift versus niche conservatism? Climatic characteristics of the native and invasive ranges of the Mediterranean house gecko (Hemidactylus turcicus). - Global Ecol. Biogeogr. 18: 674-687.
69. Roe, B. A. et al. 1985. The complete nucleotide sequence of the Xenopus laevis mitochondrial genome. - J. Biol. Chem. 260: 9759-9774.
70. Sinervo, B. et al. 2010. Erosion of lizard diversity by climate change and altered thermal niches. - Science 328: 894-899.
71. Smith, F. A. and Betancourt, J. L. 2003. The effect of Holocene temperature fluctuations on the evolution and ecology of Neotoma (woodrats) in Idaho and northwestern Utah. - Quat. Res. 59: 160-171.
72. Smith, F. A. et al. 2009. A tale of two species: extirpation and range expansion during the late Quaternary in an extreme environment. - Global Planetary Change 65: 122-133.
73. Spaulding, W. G. 1990. Vegetational and climatic development of the Mojave Desert: the last glacial maximum to the present. - In: Betancourt, J. L. et al. (eds), Packrat middens: the last 40, 000 years of biotic change. Univ. of Arizona Press, pp. 166-199.
74. Stebbins, R. C. 2003. A field guide to western Reptiles and Amphibians, 3rd ed. - Houghton Mifflin Company.
75. Suchard, M. A. et al. 2001. Bayesian selection of continuous-time Markov chain evolutionary models. - Mol. Biol. Evol. 18: 1001-1013.
76. Sugiyama, M. et al. 2010. Precipitation extreme changes exceeding moisture content increases in MIROC and IPCC climate models. - Proc. Natl Acad. Sci. USA 107: 571-575.
77. Thuiller, W. et al. 2008. Predicting global change impacts on plant species' distributions: future challenges. - Perspect. Plant Ecol. Evol. Syst. 9: 137-152.
78. Urban, M. C. et al. 2007. The cane toad's (Chaunus [Bufo] marinus) increasing ability to invade Australia is revealed by a dynamically updated range model. - Proc. R. Soc. B 274: 1413-1419.
79. Veloz, S. D. et al. 2012. No-analog climates and shifting realized niches during the late quaternary: implications for 21st-century predictions by species distribution models. - Global Change Biol. 18: 1698-1713.
80. Waltari, E. et al. 2007. Locating Pleistocene refugia: comparing phylogeographic and ecological niche model predictions. - PLoS One 2: 1-11.
81. Warren, D. L. et al. 2008. Environmental niche equivalency versus conservatism: quantitative approaches to niche evolution. - Evolution 62: 2868-2883.
82. Watson, D. F. and Philip, G. M. 1985. A refinement of inverse distance weighted interpolation. - Geo-Processing 2: 315-327.
83. Wiens, J. J. and Graham, C. H. 2005. Niche conservatism: integrating evolution, ecology, and conservation biology. - Annu. Rev. Ecol. Evol. Syst. 36: 519-539.
84. Wiens, J. J. et al. 2013. Diversity and niche evolution along aridity gradients in North American lizards (Phrynosomatidae). - Evolution 67: 1715-1728.