-
1
-
-
1842858197
-
Striated muscle cytoarchitecture: An intricate web of form and function
-
K.A. Clark, and A.S. McElhinny C.C. Gregorio Striated muscle cytoarchitecture: an intricate web of form and function Annu. Rev. Cell Dev. Biol. 18 2002 637 706
-
(2002)
Annu. Rev. Cell Dev. Biol.
, vol.18
, pp. 637-706
-
-
Clark, K.A.1
McElhinny, A.S.2
Gregorio, C.C.3
-
2
-
-
30544435275
-
Palindromic assembly of the giant muscle protein titin in the sarcomeric Z-disk
-
P. Zou, and N. Pinotsis M. Wilmanns Palindromic assembly of the giant muscle protein titin in the sarcomeric Z-disk Nature 439 2006 229 233
-
(2006)
Nature
, vol.439
, pp. 229-233
-
-
Zou, P.1
Pinotsis, N.2
Wilmanns, M.3
-
3
-
-
0034776199
-
Telethonin and other new proteins of the Z-disc of skeletal muscle
-
G. Faulkner, G. Lanfranchi, and G. Valle Telethonin and other new proteins of the Z-disc of skeletal muscle IUBMB Life 51 2001 275 282
-
(2001)
IUBMB Life
, vol.51
, pp. 275-282
-
-
Faulkner, G.1
Lanfranchi, G.2
Valle, G.3
-
4
-
-
33748331350
-
The Ig doublet Z1Z2: A model system for the hybrid analysis of conformational dynamics in Ig tandems from titin
-
M. Marino, and P. Zou O. Mayans The Ig doublet Z1Z2: a model system for the hybrid analysis of conformational dynamics in Ig tandems from titin Structure 14 2006 1437 1447
-
(2006)
Structure
, vol.14
, pp. 1437-1447
-
-
Marino, M.1
Zou, P.2
Mayans, O.3
-
5
-
-
69449083856
-
The titin-telethonin complex is a directed, superstable molecular bond in the muscle Z-disk
-
M. Bertz, M. Wilmanns, and M. Rief The titin-telethonin complex is a directed, superstable molecular bond in the muscle Z-disk Proc. Natl. Acad. Sci. USA 106 2009 13307 133310
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 13307-133310
-
-
Bertz, M.1
Wilmanns, M.2
Rief, M.3
-
6
-
-
33644846751
-
Mechanical strength of the titin Z1Z2-telethonin complex
-
E.H. Lee, and M. Gao K. Schulten Mechanical strength of the titin Z1Z2-telethonin complex Structure 14 2006 497 509
-
(2006)
Structure
, vol.14
, pp. 497-509
-
-
Lee, E.H.1
Gao, M.2
Schulten, K.3
-
7
-
-
34548645722
-
Secondary and tertiary structure elasticity of titin Z1Z2 and a titin chain model
-
E.H. Lee, and J. Hsin K. Schulten Secondary and tertiary structure elasticity of titin Z1Z2 and a titin chain model Biophys. J. 93 2007 1719 1735
-
(2007)
Biophys. J.
, vol.93
, pp. 1719-1735
-
-
Lee, E.H.1
Hsin, J.2
Schulten, K.3
-
8
-
-
11344285181
-
Study of the Villin headpiece folding dynamics by combining coarse-grained Monte Carlo evolution and all-atom molecular dynamics
-
G.M. De Mori, G. Colombo, and C. Micheletti Study of the Villin headpiece folding dynamics by combining coarse-grained Monte Carlo evolution and all-atom molecular dynamics Proteins 58 2005 459 471
-
(2005)
Proteins
, vol.58
, pp. 459-471
-
-
De Mori, G.M.1
Colombo, G.2
Micheletti, C.3
-
9
-
-
28844494903
-
Coarse-grained model of proteins incorporating atomistic detail of the active site
-
M. Neri, and C. Anselmi P. Carloni Coarse-grained model of proteins incorporating atomistic detail of the active site Phys. Rev. Lett. 95 2005 218102
-
(2005)
Phys. Rev. Lett.
, vol.95
, pp. 218102
-
-
Neri, M.1
Anselmi, C.2
Carloni, P.3
-
10
-
-
27144440086
-
Efficient sampling of protein structures by model hopping
-
W. Kwak, and U.H.E. Hansmann Efficient sampling of protein structures by model hopping Phys. Rev. Lett. 95 2005 138102
-
(2005)
Phys. Rev. Lett.
, vol.95
, pp. 138102
-
-
Kwak, W.1
Hansmann, U.H.E.2
-
11
-
-
34547926023
-
Multigraining: An algorithm for simultaneous fine-grained and coarse-grained simulation of molecular systems
-
M. Christen, and W.F. van Gunsteren Multigraining: an algorithm for simultaneous fine-grained and coarse-grained simulation of molecular systems J. Chem. Phys. 124 2006 154106
-
(2006)
J. Chem. Phys.
, vol.124
, pp. 154106
-
-
Christen, M.1
Van Gunsteren, W.F.2
-
12
-
-
33646123091
-
Coarse-grained modeling of the actin filament derived from atomistic-scale simulations
-
J.-W. Chu, and G.A. Voth Coarse-grained modeling of the actin filament derived from atomistic-scale simulations Biophys. J. 90 2006 1572 1582
-
(2006)
Biophys. J.
, vol.90
, pp. 1572-1582
-
-
Chu, J.-W.1
Voth, G.A.2
-
13
-
-
36849057606
-
Coarse-grained free energy functions for studying protein conformational changes: A double-well network model
-
J.-W. Chu, and G.A. Voth Coarse-grained free energy functions for studying protein conformational changes: a double-well network model Biophys. J. 93 2007 3860 3871
-
(2007)
Biophys. J.
, vol.93
, pp. 3860-3871
-
-
Chu, J.-W.1
Voth, G.A.2
-
14
-
-
34548304871
-
Protein conformational transitions explored by mixed elastic network models
-
W. Zheng, B.R. Brooks, and G. Hummer Protein conformational transitions explored by mixed elastic network models Proteins 69 2007 43 57
-
(2007)
Proteins
, vol.69
, pp. 43-57
-
-
Zheng, W.1
Brooks, B.R.2
Hummer, G.3
-
15
-
-
33846193288
-
Pathways and kinetic barriers in mechanical unfolding and refolding of RNA and proteins
-
C. Hyeon, R.I. Dima, and D. Thirumalai Pathways and kinetic barriers in mechanical unfolding and refolding of RNA and proteins Structure 14 2006 1633 1645
-
(2006)
Structure
, vol.14
, pp. 1633-1645
-
-
Hyeon, C.1
Dima, R.I.2
Thirumalai, D.3
-
16
-
-
38049119865
-
Revealing the bifurcation in the unfolding pathways of GFP by using single-molecule experiments and simulations
-
M. Mickler, and R.I. Dima M. Rief Revealing the bifurcation in the unfolding pathways of GFP by using single-molecule experiments and simulations Proc. Natl. Acad. Sci. USA 104 2007 20268 20273
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 20268-20273
-
-
Mickler, M.1
Dima, R.I.2
Rief, M.3
-
17
-
-
57349100824
-
Probing the origin of tubulin rigidity with molecular simulations
-
R.I. Dima, and H. Joshi Probing the origin of tubulin rigidity with molecular simulations Proc. Natl. Acad. Sci. USA 105 2008 15743 15748
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 15743-15748
-
-
Dima, R.I.1
Joshi, H.2
-
18
-
-
80855133530
-
Mechanism of fibrin(ogen) forced unfolding
-
A. Zhmurov, and A.E. Brown V. Barsegov Mechanism of fibrin(ogen) forced unfolding Structure 19 2011 1615 1624
-
(2011)
Structure
, vol.19
, pp. 1615-1624
-
-
Zhmurov, A.1
Brown, A.E.2
Barsegov, V.3
-
19
-
-
84864192760
-
Multiscale modeling of the nanomechanics of microtubule protofilaments
-
K.E. Theisen, and A. Zhmurov R.I. Dima Multiscale modeling of the nanomechanics of microtubule protofilaments J. Phys. Chem. B 116 2012 8545 8555
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 8545-8555
-
-
Theisen, K.E.1
Zhmurov, A.2
Dima, R.I.3
-
20
-
-
84885464577
-
Mechanics of severing for large microtubule complexes revealed by coarse-grained simulations
-
K.E. Theisen, and N.J. Desai R.I. Dima Mechanics of severing for large microtubule complexes revealed by coarse-grained simulations J. Chem. Phys. 139 2013 121926
-
(2013)
J. Chem. Phys.
, vol.139
, pp. 121926
-
-
Theisen, K.E.1
Desai, N.J.2
Dima, R.I.3
-
21
-
-
33847770916
-
Internal strain regulates the nucleotide binding site of the kinesin leading head
-
C. Hyeon, and J.N. Onuchic Internal strain regulates the nucleotide binding site of the kinesin leading head Proc. Natl. Acad. Sci. USA 104 2007 2175 2180
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 2175-2180
-
-
Hyeon, C.1
Onuchic, J.N.2
-
22
-
-
84859417131
-
Dissecting the kinematics of the kinesin step
-
Z. Zhang, and D. Thirumalai Dissecting the kinematics of the kinesin step Structure 20 2012 628 640
-
(2012)
Structure
, vol.20
, pp. 628-640
-
-
Zhang, Z.1
Thirumalai, D.2
-
24
-
-
79956370148
-
Collapse kinetics and chevron plots from simulations of denaturant-dependent folding of globular proteins
-
Z. Liu, and G. Reddy D. Thirumalai Collapse kinetics and chevron plots from simulations of denaturant-dependent folding of globular proteins Proc. Natl. Acad. Sci. USA 108 2011 7787 7792
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 7787-7792
-
-
Liu, Z.1
Reddy, G.2
Thirumalai, D.3
-
26
-
-
0031011695
-
Reversible unfolding of individual titin immunoglobulin domains by AFM
-
M. Rief, and M. Gautel H.E. Gaub Reversible unfolding of individual titin immunoglobulin domains by AFM Science 276 1997 1109 1112
-
(1997)
Science
, vol.276
, pp. 1109-1112
-
-
Rief, M.1
Gautel, M.2
Gaub, H.E.3
-
27
-
-
77958019726
-
Sop-GPU: Accelerating biomolecular simulations in the centisecond timescale using graphics processors
-
A. Zhmurov, and R.I. Dima V. Barsegov Sop-GPU: accelerating biomolecular simulations in the centisecond timescale using graphics processors Proteins 78 2010 2984 2999
-
(2010)
Proteins
, vol.78
, pp. 2984-2999
-
-
Zhmurov, A.1
Dima, R.I.2
Barsegov, V.3
-
28
-
-
13044272912
-
Automated analysis of interatomic contacts in proteins
-
V. Sobolev, and A. Sorokine M. Edelman Automated analysis of interatomic contacts in proteins Bioinformatics 15 1999 327 332
-
(1999)
Bioinformatics
, vol.15
, pp. 327-332
-
-
Sobolev, V.1
Sorokine, A.2
Edelman, M.3
-
29
-
-
4043171970
-
The GB/SA continuum model for solvation. A fast analytical method for the calculation of approximate Born radii
-
D. Qiu, and P.S. Shenkin W.C. Still The GB/SA continuum model for solvation. A fast analytical method for the calculation of approximate Born radii J. Phys. Chem. A 101 1997 3005 3014
-
(1997)
J. Phys. Chem. A
, vol.101
, pp. 3005-3014
-
-
Qiu, D.1
Shenkin, P.S.2
Still, W.C.3
-
30
-
-
0036138028
-
Evaluation of a fast implicit solvent model for molecular dynamics simulations
-
P. Ferrara, J. Apostolakis, and A. Caflisch Evaluation of a fast implicit solvent model for molecular dynamics simulations Proteins 46 2002 24 33
-
(2002)
Proteins
, vol.46
, pp. 24-33
-
-
Ferrara, P.1
Apostolakis, J.2
Caflisch, A.3
-
31
-
-
0022596727
-
Solvation energy in protein folding and binding
-
D. Eisenberg, and A.D. McLachlan Solvation energy in protein folding and binding Nature 319 1986 199 203
-
(1986)
Nature
, vol.319
, pp. 199-203
-
-
Eisenberg, D.1
McLachlan, A.D.2
-
32
-
-
77249096356
-
Exploring the contribution of collective motions to the dynamics of forced-unfolding in tubulin
-
H. Joshi, and F. Momin R.I. Dima Exploring the contribution of collective motions to the dynamics of forced-unfolding in tubulin Biophys. J. 98 2010 657 666
-
(2010)
Biophys. J.
, vol.98
, pp. 657-666
-
-
Joshi, H.1
Momin, F.2
Dima, R.I.3
-
34
-
-
0018101150
-
Models for the specific adhesion of cells to cells
-
G.I. Bell Models for the specific adhesion of cells to cells Science 200 1978 618 627
-
(1978)
Science
, vol.200
, pp. 618-627
-
-
Bell, G.I.1
-
35
-
-
0031001349
-
Dynamic strength of molecular adhesion bonds
-
E. Evans, and K. Ritchie Dynamic strength of molecular adhesion bonds Biophys. J. 72 1997 1541 1555
-
(1997)
Biophys. J.
, vol.72
, pp. 1541-1555
-
-
Evans, E.1
Ritchie, K.2
-
36
-
-
0034979287
-
Probing the relation between force - Lifetime - and chemistry in single molecular bonds
-
E. Evans Probing the relation between force - lifetime - and chemistry in single molecular bonds Annu. Rev. Biophys. Biomol. Struct. 30 2001 105 128
-
(2001)
Annu. Rev. Biophys. Biomol. Struct.
, vol.30
, pp. 105-128
-
-
Evans, E.1
-
38
-
-
0037184992
-
The cardiac mechanical stretch sensor machinery involves a Z disc complex that is defective in a subset of human dilated cardiomyopathy
-
R. Knöll, and M. Hoshijima K.R. Chien The cardiac mechanical stretch sensor machinery involves a Z disc complex that is defective in a subset of human dilated cardiomyopathy Cell 111 2002 943 955
-
(2002)
Cell
, vol.111
, pp. 943-955
-
-
Knöll, R.1
Hoshijima, M.2
Chien, K.R.3
-
39
-
-
80053046816
-
Telethonin deficiency is associated with maladaptation to biomechanical stress in the mammalian heart
-
R. Knöll, and W.A. Linke K.R. Chien Telethonin deficiency is associated with maladaptation to biomechanical stress in the mammalian heart Circ. Res. 109 2011 758 769
-
(2011)
Circ. Res.
, vol.109
, pp. 758-769
-
-
Knöll, R.1
Linke, W.A.2
Chien, K.R.3
-
40
-
-
9644281144
-
Tcap gene mutations in hypertrophic cardiomyopathy and dilated cardiomyopathy
-
T. Hayashi, and T. Arimura A. Kimura Tcap gene mutations in hypertrophic cardiomyopathy and dilated cardiomyopathy J. Am. Coll. Cardiol. 44 2004 2192 2201
-
(2004)
J. Am. Coll. Cardiol.
, vol.44
, pp. 2192-2201
-
-
Hayashi, T.1
Arimura, T.2
Kimura, A.3
-
41
-
-
84891724611
-
Structure of giant muscle proteins
-
L.C. Meyer, and N.T. Wright Structure of giant muscle proteins Front. Physiol 4 2013 368
-
(2013)
Front. Physiol
, vol.4
, pp. 368
-
-
Meyer, L.C.1
Wright, N.T.2
-
42
-
-
84905640736
-
E pluribus unum, no more: From one crystal, many conformations
-
R.A. Woldeyes, D.A. Sivak, and J.S. Fraser E pluribus unum, no more: from one crystal, many conformations Curr. Opin. Struct. Biol. 28 2014 56 62
-
(2014)
Curr. Opin. Struct. Biol.
, vol.28
, pp. 56-62
-
-
Woldeyes, R.A.1
Sivak, D.A.2
Fraser, J.S.3
-
43
-
-
84885861180
-
Impact and progress in small and wide angle x-ray scattering (SAXS and WAXS)
-
M.A. Graewert, and D.I. Svergun Impact and progress in small and wide angle x-ray scattering (SAXS and WAXS) Curr. Opin. Struct. Biol. 23 2013 748 754
-
(2013)
Curr. Opin. Struct. Biol.
, vol.23
, pp. 748-754
-
-
Graewert, M.A.1
Svergun, D.I.2
-
44
-
-
84865525834
-
Integrative structural modeling with small angle x-ray scattering profiles
-
D. Schneidman-Duhovny, S.J. Kim, and A. Sali Integrative structural modeling with small angle x-ray scattering profiles BMC Struct. Biol. 12 2012 17
-
(2012)
BMC Struct. Biol.
, vol.12
, pp. 17
-
-
Schneidman-Duhovny, D.1
Kim, S.J.2
Sali, A.3
-
45
-
-
84907251322
-
Combining single-molecule manipulation and single-molecule detection
-
J.C. Cordova, and D.K. Das M.J. Lang Combining single-molecule manipulation and single-molecule detection Curr. Opin. Struct. Biol. 28 2014 142 148
-
(2014)
Curr. Opin. Struct. Biol.
, vol.28
, pp. 142-148
-
-
Cordova, J.C.1
Das, D.K.2
Lang, M.J.3
-
46
-
-
40849142370
-
Elastic bond network model for protein unfolding mechanics
-
H. Dietz, and M. Rief Elastic bond network model for protein unfolding mechanics Phys. Rev. Lett. 100 2008 098101
-
(2008)
Phys. Rev. Lett.
, vol.100
, pp. 098101
-
-
Dietz, H.1
Rief, M.2
-
47
-
-
84897387243
-
Evidence of disorder in biological molecules from single-molecule pulling experiments
-
C. Hyeon, M. Hinczewski, and D. Thirumalai Evidence of disorder in biological molecules from single-molecule pulling experiments Phys. Rev. Lett. 112 2014 138101
-
(2014)
Phys. Rev. Lett.
, vol.112
, pp. 138101
-
-
Hyeon, C.1
Hinczewski, M.2
Thirumalai, D.3
-
48
-
-
84908234815
-
Conformational state distributions and catalytically relevant dynamics of a hinge-bending enzyme studied by single-molecule FRET and a coarse-grained simulation
-
M. Gabba, and S. Poblete J. Fitter Conformational state distributions and catalytically relevant dynamics of a hinge-bending enzyme studied by single-molecule FRET and a coarse-grained simulation Biophys. J. 107 2014 1913 1923
-
(2014)
Biophys. J.
, vol.107
, pp. 1913-1923
-
-
Gabba, M.1
Poblete, S.2
Fitter, J.3
-
49
-
-
84860420412
-
Exploring the mechanical stability of the C2 domains in human synaptotagmin 1
-
L. Duan, and A. Zhmurov R.I. Dima Exploring the mechanical stability of the C2 domains in human synaptotagmin 1 J. Phys. Chem. B 115 2011 10133 10146
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 10133-10146
-
-
Duan, L.1
Zhmurov, A.2
Dima, R.I.3
-
50
-
-
0030624384
-
Protein folding kinetics: Timescales, pathways and energy landscapes in terms of sequence-dependent properties
-
T. Veitshans, D. Klimov, and D. Thirumalai Protein folding kinetics: timescales, pathways and energy landscapes in terms of sequence-dependent properties Fold. Des. 2 1997 1 22
-
(1997)
Fold. Des.
, vol.2
, pp. 1-22
-
-
Veitshans, T.1
Klimov, D.2
Thirumalai, D.3
|