A social-ecological framework for "micromanaging" microbial services

Frontiers in Ecology and the Environment

Volumn 12, Issue 9, 2014, Pages 524-531

  Peralta, Ariane L ^a,d   Stuart, Diana ^b   Kent, Angela D ^c   Lennon, Jay T ^a  

^a INDIANA UNIVERSITY   (United States)

^b MICHIGAN STATE UNIVERSITY   (United States)

^c UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^d EAST CAROLINA UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOPHYSICS; ECOSYSTEM SERVICE; ENVIRONMENTAL ECONOMICS; MICROBIAL COMMUNITY; SUSTAINABLE DEVELOPMENT;

EID: 84929659083     PISSN: 15409295     EISSN: 15409309     Source Type: Journal    
DOI: 10.1890/130308     Document Type: Review

References (39)

1. Beretti M and Stuart D. 2008. Food safety and environmental quality impose conflicting demands on Central Coast growers. Calif Agr 62: 68-73.
2. Beuchat LR. 2002. Ecological factors influencing survival and growth of human pathogens on raw fruits and vegetables. Microbes Infect 4: 413-23.
3. Chung HJ, Bang W, and Drake MA. 2006. Stress response of Escherichia coli. Compr Rev Food Sci S 5: 52-64.
4. Collins SL, Carpenter SR, Swinton SM, et al. 2011. An integrated conceptual framework for long-term social-ecological research. Front Ecol Environ 9: 351-57.
5. Diez-Gonzalez F, Callaway TR, Kizoulis MG, et al. 1998. Grain feeding and the dissemination of acid-resistant Escherichia coli from cattle. Science 281: 1666-68.
6. Dunlavey E, Tucker D, and Ervin J. 2010. Environmental fate and transport of microconstituents. Water Environ Tech 22: 2-5.
7. Elser J and Bennett E. 2011. A broken biogeochemical cycle. Nature 478: 29-31.
8. Fierer N and Lennon JT. 2011. The generation and maintenance of diversity in microbial communities. Am J Bot 98: 439-48.
9. Frenzen PD, Drake A, Angulo FJ, et al. 2005. Economic cost of illness due to Escherichia coli O157 infections in the United States. J Food Protect 68: 2623-30.
10. Gillings MR and Stokes HW. 2012. Are humans increasing bacterial evolvability? Trends Ecol Evol 27: 346-52.
11. Grimm NB, Grove JM, Pickett STA, et al. 2000. Integrated approaches to long-term studies of urban ecological systems. BioScience 50: 571-84.
12. He S and McMahon KD. 2011. "Candidatus Accumulibacter" gene expression in response to dynamic EBPR conditions. ISME J 5: 329-40.
13. Heinemann M and Panke S. 2006. Synthetic biology - putting engineering into biology. Bioinformatics 22: 2790-99.
14. Holling CS. 1978. Adaptive environmental assessment and management. Chichester, UK: Wiley.
15. Ives AR and Carpenter SR. 2007. Stability and diversity of ecosystems. Science 317: 58-62.
16. Kau AL, Ahern PP, Griffin NW, et al. 2011. Human nutrition, the gut microbiome, and immune system: envisioning the future. Nature 474: 327-36.
17. Keller L and Surette MG. 2006. Communication in bacteria: an ecological and evolutionary perspective. Nat Rev Microbiol 4: 249-58.
18. Kembel SW, Jones E, Kline J, et al. 2012. Architectural design influences the diversity and structure of the built environment microbiome. ISME J 6: 1469-79.
19. Lennon JT and Jones SE. 2011. Microbial seed banks: the ecological and evolutionary implications of dormancy. Nat Rev Microbiol 9: 119-30.
20. Litchman E. 2010. Invisible invaders: non-pathogenic invasive microbes in aquatic and terrestrial ecosystems. Ecol Lett 13: 1560-72.
21. Macoubrie J. 2006. Nanotechnology: public concerns, reasoning and trust in government. Public Underst Sci 15: 221-41.
22. Mariat D, Firmesse O, Levenez F, et al. 2009. The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age. BMC Microbiol 9: 123.
23. Martiny JBH, Bohannan BJM, Brown JH, et al. 2006. Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol 4: 102-12.
24. Nielsen PH, Saunders AM, Hansen AA, et al. 2012. Microbial communities involved in enhanced biological phosphorus removal from wastewater - a model system in environmental biotechnology. Curr Opin Biotechnol 23: 452-59.
25. NRC (National Research Council). 2004. Adaptive management for water resources planning. Washington, DC: The National Academies Press.
26. Pardo-Lopez L, Soberon M, and Bravo A. 2013. Bacillus thuringiensis insecticidal three-domain Cry toxins: mode of action, insect resistance and consequences for crop protection. FEMS Microbiol Rev 37: 3-22.
27. Peplow M. 2013. Malaria drug made in yeast causes market ferment. Nature 494: 160-61.
28. Peralta AL, Matthews JW, and Kent AD. 2010. Microbial community structure and denitrification in a wetland mitigation bank. Appl Environ Microbiol 76: 4207-15.
29. Purnick PEM and Weiss R. 2009. The second wave of synthetic biology: from modules to systems. Nat Rev Mol Cell Bio 10: 410-22.
30. Ro DK, Paradise EM, Ouellet M, et al. 2006. Production of the antimalarial drug precursor artemisinic acid in engineered yeast. Nature 440: 940-43.
31. Shade A, Carey CC, Kara E, et al. 2009. Can the black box be cracked? The augmentation of microbial ecology by high-resolution, automated sensing technologies. ISME J 3: 881-88.
32. Stuart D and Worosz MR. 2012. Risk, anti-reflexivity, and ethical neutralization in industrial food processing. Agr Hum Values 29: 287-301.
33. Sutherland WJ, Aveling R, Bennun L, et al. 2012. A horizon scan of global conservation issues for 2012. Trends Ecol Evol 27: 12-18.
34. Taylor LH, Latham SM, and Woolhouse MEJ. 2001. Risk factors for human disease emergence. Phil T R Soc B 356: 983-89.
35. Turnbaugh PJ, Hamady M, Yatsunenko T, et al. 2009. A core gut microbiome in obese and lean twins. Nature 457: 480-84.
36. van der Putten WH, Anderson JM, Bardgett RD, et al. 2004. The sustainable delivery of goods and services provided by soil biota. In: Wall DH (Ed). Sustaining biodiversity and ecosystem services in soils and sediments. Washington, DC: Island Press.
37. Wexler M, Richardson DJ, and Bond PL. 2009. Radiolabelled proteomics to determine differential functioning of Accumulibacter during the anaerobic and aerobic phases of a bioreactor operating for enhanced biological phosphorus removal. Environ Microbiol 11: 3029-44.
38. Williams BK and Brown ED. 2014. Adaptive management: from more talk to real action. Environ Manage 53: 465-79.
39. Yakimov MM, Timmis KN, and Golyshin PN. 2007. Obligate oildegrading marine bacteria. Curr Opin Biotechnol 18: 257-66.