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Volumn 11, Issue 12, 2009, Pages 3029-3044

Radiolabelled proteomics to determine differential functioning of Accumulibacter during the anaerobic and aerobic phases of a bioreactor operating for enhanced biological phosphorus removal

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; PHOSPHORUS; PROTEOME; SULFUR;

EID: 71249148094     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2009.02007.x     Document Type: Article
Times cited : (60)

References (44)
  • 1
    • 0037162885 scopus 로고    scopus 로고
    • Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
    • Aparicio, S., Chapman, J., Stupka, E., Putnam, N., Chia, J.-M., Dehal, P., et al. (2002) Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297 : 1301 1310.
    • (2002) Science , vol.297 , pp. 1301-1310
    • Aparicio, S.1    Chapman, J.2    Stupka, E.3    Putnam, N.4    Chia, J.-M.5    Dehal, P.6
  • 2
    • 38149030054 scopus 로고    scopus 로고
    • Bioenergetic models for acetate and phosphate transport in bacteria important in enhanced biological phosphorus removal
    • Burow, L.C., Mabbett, A.N., McEwan, A.G., Bond, P.L. Blackall, L.L. (2008) Bioenergetic models for acetate and phosphate transport in bacteria important in enhanced biological phosphorus removal. Environ Microbiol 10 : 87 98.
    • (2008) Environ Microbiol , vol.10 , pp. 87-98
    • Burow, L.C.1    Mabbett, A.N.2    McEwan, A.G.3    Bond, P.L.4    Blackall, L.L.5
  • 3
    • 0034051181 scopus 로고    scopus 로고
    • Identification of polyphosphate-accumulating organisms and design of 16S rRNA-directed probes for their detection and quantitation
    • Crocetti, G.R., Hugenholtz, P., Bond, P.L., Schuler, A., Keller, J., Jenkins, D. Blackall, L.L. (2000) Identification of polyphosphate-accumulating organisms and design of 16S rRNA-directed probes for their detection and quantitation. Appl Environ Microbiol 66 : 1175 1182.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 1175-1182
    • Crocetti, G.R.1    Hugenholtz, P.2    Bond, P.L.3    Schuler, A.4    Keller, J.5    Jenkins, D.6    Blackall, L.L.7
  • 4
    • 0344172842 scopus 로고    scopus 로고
    • The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: Development and evaluation of a more comprehensive probe set
    • Daims, H., Brühl, A., Amann, R., Schleifer, K.H. Wagner, M. (1999) The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: Development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22 : 434 444.
    • (1999) Syst Appl Microbiol , vol.22 , pp. 434-444
    • Daims, H.1    Brühl, A.2    Amann, R.3    Schleifer, K.H.4    Wagner, M.5
  • 5
    • 58549091696 scopus 로고    scopus 로고
    • Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation
    • Denef, V.J., VerBerkmoes, N.C., Shah, M.B., Abraham, P., Lefsrud, R., Hettich, R.L. Banfield, J.F. (2008) Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation. Environ Microbiol 11 : 313 325.
    • (2008) Environ Microbiol , vol.11 , pp. 313-325
    • Denef, V.J.1    Verberkmoes, N.C.2    Shah, M.B.3    Abraham, P.4    Lefsrud, R.5    Hettich, R.L.6    Banfield, J.F.7
  • 6
    • 33749181419 scopus 로고    scopus 로고
    • The effect of cyclic aerobic-anoxic conditions on biodegradation of benzoate
    • Deniz, T., Cinar, O., Marques, A.C. Grady, C.P.L. (2006) The effect of cyclic aerobic-anoxic conditions on biodegradation of benzoate. Water Environ Res 78 : 340 352.
    • (2006) Water Environ Res , vol.78 , pp. 340-352
    • Deniz, T.1    Cinar, O.2    Marques, A.C.3    Grady, C.P.L.4
  • 7
    • 0034010349 scopus 로고    scopus 로고
    • Detection of GroEL in activated sludge: A model for detection of system stress
    • Duncan, A.J., Bott, C.B., Terlesky, K.C. Love, N.G. (2000) Detection of GroEL in activated sludge: A model for detection of system stress. Lett Appl Microbiol 30 : 28 32.
    • (2000) Lett Appl Microbiol , vol.30 , pp. 28-32
    • Duncan, A.J.1    Bott, C.B.2    Terlesky, K.C.3    Love, N.G.4
  • 8
    • 33749858537 scopus 로고    scopus 로고
    • Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
    • Garcia-Martin, H., Ivanova, N., Kunin, V., Warnecke, F., Barry, K.W., McHardy, A.C., et al. (2006) Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities. Nat Biotechnol 24 : 1263 1269.
    • (2006) Nat Biotechnol , vol.24 , pp. 1263-1269
    • Garcia-Martin, H.1    Ivanova, N.2    Kunin, V.3    Warnecke, F.4    Barry, K.W.5    McHardy, A.C.6
  • 9
    • 17044425257 scopus 로고    scopus 로고
    • 2nd edn. Covent Garden, London, UK. Imperial College Press
    • Gray, N.F. (2004) Biology of Wastewater Treatment, 2nd edn. Covent Garden, London, UK : Imperial College Press.
    • (2004) Biology of Wastewater Treatment
    • Gray, N.F.1
  • 10
    • 34648816575 scopus 로고    scopus 로고
    • 'Candidatus Accumulibacter' population structure in enhanced biological phosphorus removal sludges as revealed by polyphosphate kinase genes
    • He, S., Gall, D. McMahon, K. (2007) 'Candidatus Accumulibacter' population structure in enhanced biological phosphorus removal sludges as revealed by polyphosphate kinase genes. Appl Environ Microbiol 73 : 5865 5874.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5865-5874
    • He, S.1    Gall, D.2    McMahon, K.3
  • 11
    • 33845874641 scopus 로고    scopus 로고
    • Predicting gene synthesis level from codon usage bias
    • Henry, I. Sharp, P.M. (2007) Predicting gene synthesis level from codon usage bias. Mol Biol Evol 24 : 10 12.
    • (2007) Mol Biol Evol , vol.24 , pp. 10-12
    • Henry, I.1    Sharp, P.M.2
  • 12
    • 38149112546 scopus 로고    scopus 로고
    • Improvement of poly(3-hydroxybutyrate) [P(3HB)] production in Corynebacterium glutamicum by codon optimization, point mutation and gene dosage of P(3HB) biosynthetic genes
    • Jo, S.-J., Matsumoto, K., Leong, C.R., Ooi, T. Taguchi, S. (2007) Improvement of poly(3-hydroxybutyrate) [P(3HB)] production in Corynebacterium glutamicum by codon optimization, point mutation and gene dosage of P(3HB) biosynthetic genes. J Biosci Bioeng 104 : 457 463.
    • (2007) J Biosci Bioeng , vol.104 , pp. 457-463
    • Jo, S.-J.1    Matsumoto, K.2    Leong, C.R.3    Ooi, T.4    Taguchi, S.5
  • 13
    • 0037424538 scopus 로고    scopus 로고
    • A novel bifunctional wax ester synthase/acyl-CoA:Diacylglycerol acyltransferase mediates wax ester and triacylglycerol biosynthesis in Acinetobacter calcoaceticus ADP1
    • DOI 10.1074/jbc.M210533200
    • Kalscheuer, R. Steinbüchel, A. (2003) A novel bifunctional wax ester synthase/acyl-CoA:diacylglycerol acyltransferase mediates wax ester and triacylglycerol biosynthesis in Acinetobacter calcoaceticus ADP1. J Biol Chem 278 : 8075 8082. (Pubitemid 36800547)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.10 , pp. 8075-8082
    • Kalscheuer, R.1    Steinbuchel, A.2
  • 14
    • 33846630830 scopus 로고    scopus 로고
    • Analysis of storage lipid accumulation in Alcanivorax borkumensis: Evidence for alternative triacylglycerol biosynthesis routes in bacteria
    • Kalscheuer, R., Stöveken, T., Malkus, U., Reichelt, R., Golyshin, P.N., Sabirova, J.S., et al. (2007) Analysis of storage lipid accumulation in Alcanivorax borkumensis: Evidence for alternative triacylglycerol biosynthesis routes in bacteria. J Bacteriol 189 : 918 928.
    • (2007) J Bacteriol , vol.189 , pp. 918-928
    • Kalscheuer, R.1    Stöveken, T.2    Malkus, U.3    Reichelt, R.4    Golyshin, P.N.5    Sabirova, J.S.6
  • 15
    • 0033816775 scopus 로고    scopus 로고
    • Predicted highly synthesised genes of diverse prokaryotic genomes
    • Karlin, S. Mrázek, J. (2000) Predicted highly synthesised genes of diverse prokaryotic genomes. J Bacteriol 182 : 5238 5250.
    • (2000) J Bacteriol , vol.182 , pp. 5238-5250
    • Karlin, S.1    Mrázek, J.2
  • 16
    • 0034888743 scopus 로고    scopus 로고
    • Characterizations of highly synthesised genes of four fast-growing bacteria
    • Karlin, S., Mrázek, J., Campbell, A. Kaiser, D. (2001) Characterizations of highly synthesised genes of four fast-growing bacteria. J Bacteriol 183 : 5025 5040.
    • (2001) J Bacteriol , vol.183 , pp. 5025-5040
    • Karlin, S.1    Mrázek, J.2    Campbell, A.3    Kaiser, D.4
  • 17
    • 0029842086 scopus 로고    scopus 로고
    • Transcriptional regulation of the proton-translocating ATPase (atpIBEFHAGDC) operon of Escherichia coli: Control by cell growth rate
    • Kasimoglu, E., Park, S.J., Malek, J., Tseng, C.P. Gunsalus, R.P. (1996) Transcriptional regulation of the proton-translocating ATPase (atpIBEFHAGDC) operon of Escherichia coli: Control by cell growth rate. J Bacteriol 178 : 5563 5567.
    • (1996) J Bacteriol , vol.178 , pp. 5563-5567
    • Kasimoglu, E.1    Park, S.J.2    Malek, J.3    Tseng, C.P.4    Gunsalus, R.P.5
  • 18
    • 0013894468 scopus 로고
    • The role and control of the glyoxylate cycle in Escherichia coli
    • Kornberg, H.L. (1966) The role and control of the glyoxylate cycle in Escherichia coli. Biochem J 99 : 1 11.
    • (1966) Biochem J , vol.99 , pp. 1-11
    • Kornberg, H.L.1
  • 19
    • 33947577004 scopus 로고    scopus 로고
    • Metaproteomic analysis of a bacterial community response to cadmium exposure
    • Lacerda, C.M.R., Choe, L.H. Reardon, K.F. (2007) Metaproteomic analysis of a bacterial community response to cadmium exposure. J Proteome Res 6 : 1145 1152.
    • (2007) J Proteome Res , vol.6 , pp. 1145-1152
    • Lacerda, C.M.R.1    Choe, L.H.2    Reardon, K.F.3
  • 20
    • 33751229013 scopus 로고    scopus 로고
    • Obtaining highly enriched cultures of 'Candidatus Accumulibacter phosphatis' through alternating carbon sources
    • Lu, H.B., Oehmen, A., Virdis, B., Keller, J. Yuan, Z.G. (2006) Obtaining highly enriched cultures of 'Candidatus Accumulibacter phosphatis' through alternating carbon sources. Water Res 40 : 3838 3848.
    • (2006) Water Res , vol.40 , pp. 3838-3848
    • Lu, H.B.1    Oehmen, A.2    Virdis, B.3    Keller, J.4    Yuan, Z.G.5
  • 22
    • 0036795835 scopus 로고    scopus 로고
    • Polyphosphate kinase from activated sludge performing enhanced biological phosphorus removal
    • DOI 10.1128/AEM.68.10.4971-4978.2002
    • McMahon, K.D., Dojka, M.A., Pace, N.R., Jenkins, D. Keasling, J.D. (2002) Polyphosphate kinase from activated sludge performing enhanced biological phosphorus removal. Appl Environ Microbiol 68 : 4971 4978. (Pubitemid 35154807)
    • (2002) Applied and Environmental Microbiology , vol.68 , Issue.10 , pp. 4971-4978
    • McMahon, K.D.1    Dojka, M.A.2    Pace, N.R.3    Jenkins, D.4    Keasling, J.D.5
  • 23
    • 34249794257 scopus 로고    scopus 로고
    • Use of simulated data sets to evaluate the fidelity of metagenomic processing methods
    • Mavromatis, K., Ivanova, N., Barry, K., Shapiro, H., Goltsman, E., McHardy, A.C., et al. (2007) Use of simulated data sets to evaluate the fidelity of metagenomic processing methods. Nat Methods 4 : 495 500.
    • (2007) Nat Methods , vol.4 , pp. 495-500
    • Mavromatis, K.1    Ivanova, N.2    Barry, K.3    Shapiro, H.4    Goltsman, E.5    McHardy, A.C.6
  • 24
    • 0031860406 scopus 로고    scopus 로고
    • Variability of type 021N in activated sludge as determined by in situ substrate uptake pattern and in situ hybridization with fluorescent rRNA targeted probes
    • Nielsen, P.H., Andreasen, K., Wagner, M., Blackall, L.L., Lemmer, H. Seviour, R.J. (1998) Variability of type 021N in activated sludge as determined by in situ substrate uptake pattern and in situ hybridization with fluorescent rRNA targeted probes. Water Sci Technol 37 : 423 440.
    • (1998) Water Sci Technol , vol.37 , pp. 423-440
    • Nielsen, P.H.1    Andreasen, K.2    Wagner, M.3    Blackall, L.L.4    Lemmer, H.5    Seviour, R.J.6
  • 27
    • 0028815572 scopus 로고
    • Regulation of Malate dehydrogenase (mdh) gene expression in Escherichia coli in response to oxygen, carbon, and heme availability
    • Park, S.-J., Cotter, P.A. Gunsalus, R.P. (1995) Regulation of Malate dehydrogenase (mdh) gene expression in Escherichia coli in response to oxygen, carbon, and heme availability. J Bacteriol 177 : 6652 6656.
    • (1995) J Bacteriol , vol.177 , pp. 6652-6656
    • Park, S.-J.1    Cotter, P.A.2    Gunsalus, R.P.3
  • 29
    • 51649112363 scopus 로고    scopus 로고
    • Environmental distribution and population biology of Candidatus Accumulibacter, a primary agent of biological phosphorus removal
    • Peterson, S.B., Warnecke, F., Madejska, J., McMahon, K.D. Hugenholtz, P. (2008) Environmental distribution and population biology of Candidatus Accumulibacter, a primary agent of biological phosphorus removal. Environ Microbiol 10 : 2692 2703.
    • (2008) Environ Microbiol , vol.10 , pp. 2692-2703
    • Peterson, S.B.1    Warnecke, F.2    Madejska, J.3    McMahon, K.D.4    Hugenholtz, P.5
  • 30
    • 33845518817 scopus 로고    scopus 로고
    • The use of fatty acid methyl esters as biomarkers to determine aerobic, facultatively aerobic and anaerobic communities in wastewater treatment systems
    • Quezada, M., Buitrón, G., Moreno-Andrade, I., Moreno, G. López-Marín, L.M. (2007) The use of fatty acid methyl esters as biomarkers to determine aerobic, facultatively aerobic and anaerobic communities in wastewater treatment systems. FEMS Microbiol Lett 266 : 75 82.
    • (2007) FEMS Microbiol Lett , vol.266 , pp. 75-82
    • Quezada, M.1    Buitrón, G.2    Moreno-Andrade, I.3    Moreno, G.4    López-Marín, L.M.5
  • 32
    • 0028556541 scopus 로고
    • Deterioration of enhanced biological phosphorus removal by the domination of microorganisms without polyphosphate accumulation
    • Satoh, H., Mino, T. Matsuo, T. (1994) Deterioration of enhanced biological phosphorus removal by the domination of microorganisms without polyphosphate accumulation. Water Sci Technol 30 : 203 211.
    • (1994) Water Sci Technol , vol.30 , pp. 203-211
    • Satoh, H.1    Mino, T.2    Matsuo, T.3
  • 34
    • 1642528831 scopus 로고    scopus 로고
    • Post-translational modifications and their biological functions: Proteomic analysis of systematic approaches
    • Seo, J. Lee, K.-J. (2004) Post-translational modifications and their biological functions: Proteomic analysis of systematic approaches. J Biochem Mol Biol 37 : 35 44.
    • (2004) J Biochem Mol Biol , vol.37 , pp. 35-44
    • Seo, J.1    Lee, K.-J.2
  • 35
    • 0037383781 scopus 로고    scopus 로고
    • The microbiology of biological phosphorus removal in activated sludge systems
    • Seviour, R.J., Mino, T. Onuki, M. (2003) The microbiology of biological phosphorus removal in activated sludge systems. FEMS Microbiol Rev 27 : 99 127.
    • (2003) FEMS Microbiol Rev , vol.27 , pp. 99-127
    • Seviour, R.J.1    Mino, T.2    Onuki, M.3
  • 36
    • 0028401588 scopus 로고
    • Model of the anaerobic metabolism of the biological phosphorus removal process: Stoichiometry and pH influence
    • Smolders, G.J.F., van der Meij, J., van Loosdrecht, M.C.M. Heijnen, J.J. (1994) Model of the anaerobic metabolism of the biological phosphorus removal process: Stoichiometry and pH influence. Biotechnol Bioeng 43 : 461 470.
    • (1994) Biotechnol Bioeng , vol.43 , pp. 461-470
    • Smolders, G.J.F.1    Van Der Meij, J.2    Van Loosdrecht, M.C.M.3    Heijnen, J.J.4
  • 37
    • 0024026753 scopus 로고
    • Molecular and cellular regulation of autotrophic carbon dioxide fixation in microorganisms
    • Tabita, F.R. (1988) Molecular and cellular regulation of autotrophic carbon dioxide fixation in microorganisms. Microbiol Rev 52 : 155 189.
    • (1988) Microbiol Rev , vol.52 , pp. 155-189
    • Tabita, F.R.1
  • 38
    • 34347351322 scopus 로고    scopus 로고
    • Growth of filamentous bacteria in an enhanced biological phosphorus removal system
    • Vaiopoulou, E., Melidis, P. Aivasidis, A. (2007) Growth of filamentous bacteria in an enhanced biological phosphorus removal system. Desalination 213 : 288 296.
    • (2007) Desalination , vol.213 , pp. 288-296
    • Vaiopoulou, E.1    Melidis, P.2    Aivasidis, A.3
  • 39
    • 28644431563 scopus 로고    scopus 로고
    • A wide host-range metagenomic library from a waste-water treatment plant yields a novel alcohol dehydrogenase that allows Rhizobium leguminosarum but not Escherichia coli to grow on ethanol
    • Wexler, M., Richardson, D.J., Bond, P.L. Johnston, A.W.B. (2005) A wide host-range metagenomic library from a waste-water treatment plant yields a novel alcohol dehydrogenase that allows Rhizobium leguminosarum but not Escherichia coli to grow on ethanol. Environ Microbiol 7 : 1917 1926.
    • (2005) Environ Microbiol , vol.7 , pp. 1917-1926
    • Wexler, M.1    Richardson, D.J.2    Bond, P.L.3    Johnston, A.W.B.4
  • 40
    • 4344646435 scopus 로고    scopus 로고
    • The application of two-dimensional polyacrylamide gel electrophoresis and downstream analyses to a mixed community of prokaryotic microorganisms
    • Wilmes, P. Bond, P.L. (2004) The application of two-dimensional polyacrylamide gel electrophoresis and downstream analyses to a mixed community of prokaryotic microorganisms. Environ Microbiol 6 : 911 920.
    • (2004) Environ Microbiol , vol.6 , pp. 911-920
    • Wilmes, P.1    Bond, P.L.2
  • 41
    • 33746599434 scopus 로고    scopus 로고
    • Towards exposure of elusive metabolic mixed-culture processes: The application of metaproteomic analyses to activated sludge
    • Wilmes, P. Bond, P.L. (2006) Towards exposure of elusive metabolic mixed-culture processes: The application of metaproteomic analyses to activated sludge. Water Sci Technol 54 : 217 226.
    • (2006) Water Sci Technol , vol.54 , pp. 217-226
    • Wilmes, P.1    Bond, P.L.2
  • 42
    • 44249115619 scopus 로고    scopus 로고
    • Metaproteomics provides functional insight into activated sludge wastewater treatment
    • Wilmes, P., Wexler, M. Bond, P.L. (2008a) Metaproteomics provides functional insight into activated sludge wastewater treatment. PLoS ONE 3 : E1778.
    • (2008) PLoS ONE , vol.3 , pp. 1778
    • Wilmes, P.1    Wexler, M.2    Bond, P.L.3
  • 43
    • 49449111457 scopus 로고    scopus 로고
    • Community proteogenomics highlights strain-variant protein synthesis within activated sludge performing enhanced biological phosphorus removal
    • Wilmes, P., Andersson, A.F., Lefsrud, M.G., VerBerkmoes, N.C., Wexler, M., Shah, M., et al. (2008b) Community proteogenomics highlights strain-variant protein synthesis within activated sludge performing enhanced biological phosphorus removal. ISME J 2 : 853 864.
    • (2008) ISME J , vol.2 , pp. 853-864
    • Wilmes, P.1    Andersson, A.F.2    Lefsrud, M.G.3    Verberkmoes, N.C.4    Wexler, M.5    Shah, M.6
  • 44
    • 61549132009 scopus 로고    scopus 로고
    • Involvement of the TCA cycle in the anaerobic metabolism of polyphosphate accumulating organisms (PAOs)
    • Zhou, Y., Pijuan, M., Zeng, R.J. Yuan, Z. (2009) Involvement of the TCA cycle in the anaerobic metabolism of polyphosphate accumulating organisms (PAOs). Water Res 43 : 1330 1340.
    • (2009) Water Res , vol.43 , pp. 1330-1340
    • Zhou, Y.1    Pijuan, M.2    Zeng, R.J.3    Yuan, Z.4


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