-
1
-
-
0037162885
-
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
-
Aparicio, S., Chapman, J., Stupka, E., Putnam, N., Chia, J.-M., Dehal, P., et al. (2002) Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297 : 1301 1310.
-
(2002)
Science
, vol.297
, pp. 1301-1310
-
-
Aparicio, S.1
Chapman, J.2
Stupka, E.3
Putnam, N.4
Chia, J.-M.5
Dehal, P.6
-
2
-
-
38149030054
-
Bioenergetic models for acetate and phosphate transport in bacteria important in enhanced biological phosphorus removal
-
Burow, L.C., Mabbett, A.N., McEwan, A.G., Bond, P.L. Blackall, L.L. (2008) Bioenergetic models for acetate and phosphate transport in bacteria important in enhanced biological phosphorus removal. Environ Microbiol 10 : 87 98.
-
(2008)
Environ Microbiol
, vol.10
, pp. 87-98
-
-
Burow, L.C.1
Mabbett, A.N.2
McEwan, A.G.3
Bond, P.L.4
Blackall, L.L.5
-
3
-
-
0034051181
-
Identification of polyphosphate-accumulating organisms and design of 16S rRNA-directed probes for their detection and quantitation
-
Crocetti, G.R., Hugenholtz, P., Bond, P.L., Schuler, A., Keller, J., Jenkins, D. Blackall, L.L. (2000) Identification of polyphosphate-accumulating organisms and design of 16S rRNA-directed probes for their detection and quantitation. Appl Environ Microbiol 66 : 1175 1182.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 1175-1182
-
-
Crocetti, G.R.1
Hugenholtz, P.2
Bond, P.L.3
Schuler, A.4
Keller, J.5
Jenkins, D.6
Blackall, L.L.7
-
4
-
-
0344172842
-
The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: Development and evaluation of a more comprehensive probe set
-
Daims, H., Brühl, A., Amann, R., Schleifer, K.H. Wagner, M. (1999) The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: Development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22 : 434 444.
-
(1999)
Syst Appl Microbiol
, vol.22
, pp. 434-444
-
-
Daims, H.1
Brühl, A.2
Amann, R.3
Schleifer, K.H.4
Wagner, M.5
-
5
-
-
58549091696
-
Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation
-
Denef, V.J., VerBerkmoes, N.C., Shah, M.B., Abraham, P., Lefsrud, R., Hettich, R.L. Banfield, J.F. (2008) Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation. Environ Microbiol 11 : 313 325.
-
(2008)
Environ Microbiol
, vol.11
, pp. 313-325
-
-
Denef, V.J.1
Verberkmoes, N.C.2
Shah, M.B.3
Abraham, P.4
Lefsrud, R.5
Hettich, R.L.6
Banfield, J.F.7
-
6
-
-
33749181419
-
The effect of cyclic aerobic-anoxic conditions on biodegradation of benzoate
-
Deniz, T., Cinar, O., Marques, A.C. Grady, C.P.L. (2006) The effect of cyclic aerobic-anoxic conditions on biodegradation of benzoate. Water Environ Res 78 : 340 352.
-
(2006)
Water Environ Res
, vol.78
, pp. 340-352
-
-
Deniz, T.1
Cinar, O.2
Marques, A.C.3
Grady, C.P.L.4
-
7
-
-
0034010349
-
Detection of GroEL in activated sludge: A model for detection of system stress
-
Duncan, A.J., Bott, C.B., Terlesky, K.C. Love, N.G. (2000) Detection of GroEL in activated sludge: A model for detection of system stress. Lett Appl Microbiol 30 : 28 32.
-
(2000)
Lett Appl Microbiol
, vol.30
, pp. 28-32
-
-
Duncan, A.J.1
Bott, C.B.2
Terlesky, K.C.3
Love, N.G.4
-
8
-
-
33749858537
-
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
-
Garcia-Martin, H., Ivanova, N., Kunin, V., Warnecke, F., Barry, K.W., McHardy, A.C., et al. (2006) Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities. Nat Biotechnol 24 : 1263 1269.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 1263-1269
-
-
Garcia-Martin, H.1
Ivanova, N.2
Kunin, V.3
Warnecke, F.4
Barry, K.W.5
McHardy, A.C.6
-
9
-
-
17044425257
-
-
2nd edn. Covent Garden, London, UK. Imperial College Press
-
Gray, N.F. (2004) Biology of Wastewater Treatment, 2nd edn. Covent Garden, London, UK : Imperial College Press.
-
(2004)
Biology of Wastewater Treatment
-
-
Gray, N.F.1
-
10
-
-
34648816575
-
'Candidatus Accumulibacter' population structure in enhanced biological phosphorus removal sludges as revealed by polyphosphate kinase genes
-
He, S., Gall, D. McMahon, K. (2007) 'Candidatus Accumulibacter' population structure in enhanced biological phosphorus removal sludges as revealed by polyphosphate kinase genes. Appl Environ Microbiol 73 : 5865 5874.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5865-5874
-
-
He, S.1
Gall, D.2
McMahon, K.3
-
11
-
-
33845874641
-
Predicting gene synthesis level from codon usage bias
-
Henry, I. Sharp, P.M. (2007) Predicting gene synthesis level from codon usage bias. Mol Biol Evol 24 : 10 12.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 10-12
-
-
Henry, I.1
Sharp, P.M.2
-
12
-
-
38149112546
-
Improvement of poly(3-hydroxybutyrate) [P(3HB)] production in Corynebacterium glutamicum by codon optimization, point mutation and gene dosage of P(3HB) biosynthetic genes
-
Jo, S.-J., Matsumoto, K., Leong, C.R., Ooi, T. Taguchi, S. (2007) Improvement of poly(3-hydroxybutyrate) [P(3HB)] production in Corynebacterium glutamicum by codon optimization, point mutation and gene dosage of P(3HB) biosynthetic genes. J Biosci Bioeng 104 : 457 463.
-
(2007)
J Biosci Bioeng
, vol.104
, pp. 457-463
-
-
Jo, S.-J.1
Matsumoto, K.2
Leong, C.R.3
Ooi, T.4
Taguchi, S.5
-
13
-
-
0037424538
-
A novel bifunctional wax ester synthase/acyl-CoA:Diacylglycerol acyltransferase mediates wax ester and triacylglycerol biosynthesis in Acinetobacter calcoaceticus ADP1
-
DOI 10.1074/jbc.M210533200
-
Kalscheuer, R. Steinbüchel, A. (2003) A novel bifunctional wax ester synthase/acyl-CoA:diacylglycerol acyltransferase mediates wax ester and triacylglycerol biosynthesis in Acinetobacter calcoaceticus ADP1. J Biol Chem 278 : 8075 8082. (Pubitemid 36800547)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.10
, pp. 8075-8082
-
-
Kalscheuer, R.1
Steinbuchel, A.2
-
14
-
-
33846630830
-
Analysis of storage lipid accumulation in Alcanivorax borkumensis: Evidence for alternative triacylglycerol biosynthesis routes in bacteria
-
Kalscheuer, R., Stöveken, T., Malkus, U., Reichelt, R., Golyshin, P.N., Sabirova, J.S., et al. (2007) Analysis of storage lipid accumulation in Alcanivorax borkumensis: Evidence for alternative triacylglycerol biosynthesis routes in bacteria. J Bacteriol 189 : 918 928.
-
(2007)
J Bacteriol
, vol.189
, pp. 918-928
-
-
Kalscheuer, R.1
Stöveken, T.2
Malkus, U.3
Reichelt, R.4
Golyshin, P.N.5
Sabirova, J.S.6
-
15
-
-
0033816775
-
Predicted highly synthesised genes of diverse prokaryotic genomes
-
Karlin, S. Mrázek, J. (2000) Predicted highly synthesised genes of diverse prokaryotic genomes. J Bacteriol 182 : 5238 5250.
-
(2000)
J Bacteriol
, vol.182
, pp. 5238-5250
-
-
Karlin, S.1
Mrázek, J.2
-
16
-
-
0034888743
-
Characterizations of highly synthesised genes of four fast-growing bacteria
-
Karlin, S., Mrázek, J., Campbell, A. Kaiser, D. (2001) Characterizations of highly synthesised genes of four fast-growing bacteria. J Bacteriol 183 : 5025 5040.
-
(2001)
J Bacteriol
, vol.183
, pp. 5025-5040
-
-
Karlin, S.1
Mrázek, J.2
Campbell, A.3
Kaiser, D.4
-
17
-
-
0029842086
-
Transcriptional regulation of the proton-translocating ATPase (atpIBEFHAGDC) operon of Escherichia coli: Control by cell growth rate
-
Kasimoglu, E., Park, S.J., Malek, J., Tseng, C.P. Gunsalus, R.P. (1996) Transcriptional regulation of the proton-translocating ATPase (atpIBEFHAGDC) operon of Escherichia coli: Control by cell growth rate. J Bacteriol 178 : 5563 5567.
-
(1996)
J Bacteriol
, vol.178
, pp. 5563-5567
-
-
Kasimoglu, E.1
Park, S.J.2
Malek, J.3
Tseng, C.P.4
Gunsalus, R.P.5
-
18
-
-
0013894468
-
The role and control of the glyoxylate cycle in Escherichia coli
-
Kornberg, H.L. (1966) The role and control of the glyoxylate cycle in Escherichia coli. Biochem J 99 : 1 11.
-
(1966)
Biochem J
, vol.99
, pp. 1-11
-
-
Kornberg, H.L.1
-
19
-
-
33947577004
-
Metaproteomic analysis of a bacterial community response to cadmium exposure
-
Lacerda, C.M.R., Choe, L.H. Reardon, K.F. (2007) Metaproteomic analysis of a bacterial community response to cadmium exposure. J Proteome Res 6 : 1145 1152.
-
(2007)
J Proteome Res
, vol.6
, pp. 1145-1152
-
-
Lacerda, C.M.R.1
Choe, L.H.2
Reardon, K.F.3
-
20
-
-
33751229013
-
Obtaining highly enriched cultures of 'Candidatus Accumulibacter phosphatis' through alternating carbon sources
-
Lu, H.B., Oehmen, A., Virdis, B., Keller, J. Yuan, Z.G. (2006) Obtaining highly enriched cultures of 'Candidatus Accumulibacter phosphatis' through alternating carbon sources. Water Res 40 : 3838 3848.
-
(2006)
Water Res
, vol.40
, pp. 3838-3848
-
-
Lu, H.B.1
Oehmen, A.2
Virdis, B.3
Keller, J.4
Yuan, Z.G.5
-
21
-
-
2542523843
-
ARB: A software environment for sequence data
-
Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, L., et al. (2004) ARB: A software environment for sequence data. Nucleic Acids Res 32 : 1363 1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar, L.6
-
22
-
-
0036795835
-
Polyphosphate kinase from activated sludge performing enhanced biological phosphorus removal
-
DOI 10.1128/AEM.68.10.4971-4978.2002
-
McMahon, K.D., Dojka, M.A., Pace, N.R., Jenkins, D. Keasling, J.D. (2002) Polyphosphate kinase from activated sludge performing enhanced biological phosphorus removal. Appl Environ Microbiol 68 : 4971 4978. (Pubitemid 35154807)
-
(2002)
Applied and Environmental Microbiology
, vol.68
, Issue.10
, pp. 4971-4978
-
-
McMahon, K.D.1
Dojka, M.A.2
Pace, N.R.3
Jenkins, D.4
Keasling, J.D.5
-
23
-
-
34249794257
-
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods
-
Mavromatis, K., Ivanova, N., Barry, K., Shapiro, H., Goltsman, E., McHardy, A.C., et al. (2007) Use of simulated data sets to evaluate the fidelity of metagenomic processing methods. Nat Methods 4 : 495 500.
-
(2007)
Nat Methods
, vol.4
, pp. 495-500
-
-
Mavromatis, K.1
Ivanova, N.2
Barry, K.3
Shapiro, H.4
Goltsman, E.5
McHardy, A.C.6
-
24
-
-
0031860406
-
Variability of type 021N in activated sludge as determined by in situ substrate uptake pattern and in situ hybridization with fluorescent rRNA targeted probes
-
Nielsen, P.H., Andreasen, K., Wagner, M., Blackall, L.L., Lemmer, H. Seviour, R.J. (1998) Variability of type 021N in activated sludge as determined by in situ substrate uptake pattern and in situ hybridization with fluorescent rRNA targeted probes. Water Sci Technol 37 : 423 440.
-
(1998)
Water Sci Technol
, vol.37
, pp. 423-440
-
-
Nielsen, P.H.1
Andreasen, K.2
Wagner, M.3
Blackall, L.L.4
Lemmer, H.5
Seviour, R.J.6
-
25
-
-
34247612370
-
Advances in enhanced biological phosphorus removal: From micro to macro scale
-
Oehmen, A., Lemos, P.C., Carvalho, G., Yuan, Z., Keller, J., Blackall, L.L. Reis, M.A.M. (2007) Advances in enhanced biological phosphorus removal: From micro to macro scale. Water Res 41 : 2271 2300.
-
(2007)
Water Res
, vol.41
, pp. 2271-2300
-
-
Oehmen, A.1
Lemos, P.C.2
Carvalho, G.3
Yuan, Z.4
Keller, J.5
Blackall, L.L.6
Reis, M.A.M.7
-
26
-
-
33244481260
-
Microcosm experiments of oil degradation by microbial mats
-
de Oteyza, T.G., Grimalt, J.O., Lliros, M. Esteve, I. (2006) Microcosm experiments of oil degradation by microbial mats. Sci Total Environ 357 : 12 24.
-
(2006)
Sci Total Environ
, vol.357
, pp. 12-24
-
-
De Oteyza, T.G.1
Grimalt, J.O.2
Lliros, M.3
Esteve, I.4
-
27
-
-
0028815572
-
Regulation of Malate dehydrogenase (mdh) gene expression in Escherichia coli in response to oxygen, carbon, and heme availability
-
Park, S.-J., Cotter, P.A. Gunsalus, R.P. (1995) Regulation of Malate dehydrogenase (mdh) gene expression in Escherichia coli in response to oxygen, carbon, and heme availability. J Bacteriol 177 : 6652 6656.
-
(1995)
J Bacteriol
, vol.177
, pp. 6652-6656
-
-
Park, S.-J.1
Cotter, P.A.2
Gunsalus, R.P.3
-
29
-
-
51649112363
-
Environmental distribution and population biology of Candidatus Accumulibacter, a primary agent of biological phosphorus removal
-
Peterson, S.B., Warnecke, F., Madejska, J., McMahon, K.D. Hugenholtz, P. (2008) Environmental distribution and population biology of Candidatus Accumulibacter, a primary agent of biological phosphorus removal. Environ Microbiol 10 : 2692 2703.
-
(2008)
Environ Microbiol
, vol.10
, pp. 2692-2703
-
-
Peterson, S.B.1
Warnecke, F.2
Madejska, J.3
McMahon, K.D.4
Hugenholtz, P.5
-
30
-
-
33845518817
-
The use of fatty acid methyl esters as biomarkers to determine aerobic, facultatively aerobic and anaerobic communities in wastewater treatment systems
-
Quezada, M., Buitrón, G., Moreno-Andrade, I., Moreno, G. López-Marín, L.M. (2007) The use of fatty acid methyl esters as biomarkers to determine aerobic, facultatively aerobic and anaerobic communities in wastewater treatment systems. FEMS Microbiol Lett 266 : 75 82.
-
(2007)
FEMS Microbiol Lett
, vol.266
, pp. 75-82
-
-
Quezada, M.1
Buitrón, G.2
Moreno-Andrade, I.3
Moreno, G.4
López-Marín, L.M.5
-
31
-
-
21344465408
-
Community proteomics of a natural microbial biofilm
-
Ram, R.J., VerBerkmoes, N.C., Thelen, M.P., Tyson, G.W., Baker, B.J., Blake, R.C., II, et al. (2005) Community proteomics of a natural microbial biofilm. Science 308 : 1915 1920.
-
(2005)
Science
, vol.308
, pp. 1915-1920
-
-
Ram, R.J.1
Verberkmoes, N.C.2
Thelen, M.P.3
Tyson, G.W.4
Baker, B.J.5
Ii B. C, R.6
-
32
-
-
0028556541
-
Deterioration of enhanced biological phosphorus removal by the domination of microorganisms without polyphosphate accumulation
-
Satoh, H., Mino, T. Matsuo, T. (1994) Deterioration of enhanced biological phosphorus removal by the domination of microorganisms without polyphosphate accumulation. Water Sci Technol 30 : 203 211.
-
(1994)
Water Sci Technol
, vol.30
, pp. 203-211
-
-
Satoh, H.1
Mino, T.2
Matsuo, T.3
-
34
-
-
1642528831
-
Post-translational modifications and their biological functions: Proteomic analysis of systematic approaches
-
Seo, J. Lee, K.-J. (2004) Post-translational modifications and their biological functions: Proteomic analysis of systematic approaches. J Biochem Mol Biol 37 : 35 44.
-
(2004)
J Biochem Mol Biol
, vol.37
, pp. 35-44
-
-
Seo, J.1
Lee, K.-J.2
-
35
-
-
0037383781
-
The microbiology of biological phosphorus removal in activated sludge systems
-
Seviour, R.J., Mino, T. Onuki, M. (2003) The microbiology of biological phosphorus removal in activated sludge systems. FEMS Microbiol Rev 27 : 99 127.
-
(2003)
FEMS Microbiol Rev
, vol.27
, pp. 99-127
-
-
Seviour, R.J.1
Mino, T.2
Onuki, M.3
-
36
-
-
0028401588
-
Model of the anaerobic metabolism of the biological phosphorus removal process: Stoichiometry and pH influence
-
Smolders, G.J.F., van der Meij, J., van Loosdrecht, M.C.M. Heijnen, J.J. (1994) Model of the anaerobic metabolism of the biological phosphorus removal process: Stoichiometry and pH influence. Biotechnol Bioeng 43 : 461 470.
-
(1994)
Biotechnol Bioeng
, vol.43
, pp. 461-470
-
-
Smolders, G.J.F.1
Van Der Meij, J.2
Van Loosdrecht, M.C.M.3
Heijnen, J.J.4
-
37
-
-
0024026753
-
Molecular and cellular regulation of autotrophic carbon dioxide fixation in microorganisms
-
Tabita, F.R. (1988) Molecular and cellular regulation of autotrophic carbon dioxide fixation in microorganisms. Microbiol Rev 52 : 155 189.
-
(1988)
Microbiol Rev
, vol.52
, pp. 155-189
-
-
Tabita, F.R.1
-
38
-
-
34347351322
-
Growth of filamentous bacteria in an enhanced biological phosphorus removal system
-
Vaiopoulou, E., Melidis, P. Aivasidis, A. (2007) Growth of filamentous bacteria in an enhanced biological phosphorus removal system. Desalination 213 : 288 296.
-
(2007)
Desalination
, vol.213
, pp. 288-296
-
-
Vaiopoulou, E.1
Melidis, P.2
Aivasidis, A.3
-
39
-
-
28644431563
-
A wide host-range metagenomic library from a waste-water treatment plant yields a novel alcohol dehydrogenase that allows Rhizobium leguminosarum but not Escherichia coli to grow on ethanol
-
Wexler, M., Richardson, D.J., Bond, P.L. Johnston, A.W.B. (2005) A wide host-range metagenomic library from a waste-water treatment plant yields a novel alcohol dehydrogenase that allows Rhizobium leguminosarum but not Escherichia coli to grow on ethanol. Environ Microbiol 7 : 1917 1926.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1917-1926
-
-
Wexler, M.1
Richardson, D.J.2
Bond, P.L.3
Johnston, A.W.B.4
-
40
-
-
4344646435
-
The application of two-dimensional polyacrylamide gel electrophoresis and downstream analyses to a mixed community of prokaryotic microorganisms
-
Wilmes, P. Bond, P.L. (2004) The application of two-dimensional polyacrylamide gel electrophoresis and downstream analyses to a mixed community of prokaryotic microorganisms. Environ Microbiol 6 : 911 920.
-
(2004)
Environ Microbiol
, vol.6
, pp. 911-920
-
-
Wilmes, P.1
Bond, P.L.2
-
41
-
-
33746599434
-
Towards exposure of elusive metabolic mixed-culture processes: The application of metaproteomic analyses to activated sludge
-
Wilmes, P. Bond, P.L. (2006) Towards exposure of elusive metabolic mixed-culture processes: The application of metaproteomic analyses to activated sludge. Water Sci Technol 54 : 217 226.
-
(2006)
Water Sci Technol
, vol.54
, pp. 217-226
-
-
Wilmes, P.1
Bond, P.L.2
-
42
-
-
44249115619
-
Metaproteomics provides functional insight into activated sludge wastewater treatment
-
Wilmes, P., Wexler, M. Bond, P.L. (2008a) Metaproteomics provides functional insight into activated sludge wastewater treatment. PLoS ONE 3 : E1778.
-
(2008)
PLoS ONE
, vol.3
, pp. 1778
-
-
Wilmes, P.1
Wexler, M.2
Bond, P.L.3
-
43
-
-
49449111457
-
Community proteogenomics highlights strain-variant protein synthesis within activated sludge performing enhanced biological phosphorus removal
-
Wilmes, P., Andersson, A.F., Lefsrud, M.G., VerBerkmoes, N.C., Wexler, M., Shah, M., et al. (2008b) Community proteogenomics highlights strain-variant protein synthesis within activated sludge performing enhanced biological phosphorus removal. ISME J 2 : 853 864.
-
(2008)
ISME J
, vol.2
, pp. 853-864
-
-
Wilmes, P.1
Andersson, A.F.2
Lefsrud, M.G.3
Verberkmoes, N.C.4
Wexler, M.5
Shah, M.6
-
44
-
-
61549132009
-
Involvement of the TCA cycle in the anaerobic metabolism of polyphosphate accumulating organisms (PAOs)
-
Zhou, Y., Pijuan, M., Zeng, R.J. Yuan, Z. (2009) Involvement of the TCA cycle in the anaerobic metabolism of polyphosphate accumulating organisms (PAOs). Water Res 43 : 1330 1340.
-
(2009)
Water Res
, vol.43
, pp. 1330-1340
-
-
Zhou, Y.1
Pijuan, M.2
Zeng, R.J.3
Yuan, Z.4
|