-
1
-
-
67049119180
-
Evidence for an ancient adaptive episode of convergent molecular evolution
-
Castoe TA, De Koning APJ, KimH-M, Gu W, Noonan BP, Naylor G, Jiang ZJ, Parkinsons CL, Pollock DD. (2009). Evidence for an ancient adaptive episode of convergent molecular evolution. Proc Natl Acad Sci USA. 106: 8986-8991
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 8986-8991
-
-
Castoe, T.A.1
De Koning, A.P.J.2
Kim, H.-M.3
Gu, W.4
Noonan, B.P.5
Naylor, G.6
Jiang, Z.J.7
Parkinsons, C.L.8
Pollock, D.D.9
-
2
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol. 17: 540-552
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
3
-
-
77955846669
-
Causes and evolutionary significance of genetic convergence
-
Christin PA, Weinreich DM, Besnard G. (2010). Causes and evolutionary significance of genetic convergence. Trends Genet. 26: 400-405
-
(2010)
Trends Genet
, vol.26
, pp. 400-405
-
-
Christin, P.A.1
Weinreich, D.M.2
Besnard, G.3
-
4
-
-
34447341925
-
SDM: A fast distancebased approach for (super)tree building in phylogenomics
-
Criscuolo A, Berry V, Douzery EJP, Gascuel O. (2006). SDM: a fast distancebased approach for (super)tree building in phylogenomics. Syst Biol. 55: 740-755
-
(2006)
Syst Biol
, vol.55
, pp. 740-755
-
-
Criscuolo, A.1
Berry, V.2
Douzery, E.J.P.3
Gascuel, O.4
-
5
-
-
84859934504
-
Parallel signatures of sequence evolution among hearing genes in echolocating mammals: An emerging model of genetic convergence
-
Davies KTJ, Cotton JA, Kirwan JD, Teeling EC, Rossiter SJ. (2012). Parallel signatures of sequence evolution among hearing genes in echolocating mammals: an emerging model of genetic convergence. Heredity 108: 480-489
-
(2012)
Heredity
, vol.108
, pp. 480-489
-
-
Davies, K.T.J.1
Cotton, J.A.2
Kirwan, J.D.3
Teeling, E.C.4
Rossiter, S.J.5
-
6
-
-
3042666256
-
Muscle: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32: 1792-1797
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
7
-
-
84868097156
-
A forward genomics approach links genotype to phenotype using independent phenotypic losses among related species
-
Hiller M, Schaar BT, Indjelan VB, Kingsley DM, Hagey LR, Bejerano G. (2012). A forward genomics approach links genotype to phenotype using independent phenotypic losses among related species. Cell Rep. 2: 817-823
-
(2012)
Cell Rep
, vol.2
, pp. 817-823
-
-
Hiller, M.1
Schaar, B.T.2
Indjelan, V.B.3
Kingsley, D.M.4
Hagey, L.R.5
Bejerano, G.6
-
8
-
-
0031513152
-
The average consensus procedure: Combination of weighted trees containing identical or overlapping sets of taxa
-
Lapointe F-J, Cucumel G. (1997). The average consensus procedure: combination of weighted trees containing identical or overlapping sets of taxa. Syst Biol. 46: 306-312
-
(1997)
Syst Biol
, vol.46
, pp. 306-312
-
-
Lapointe, F.-J.1
Cucumel, G.2
-
9
-
-
34248159030
-
Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model
-
Lartillot N, Brinkmann H, Philippe H. (2007). Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model. BMC Evol.Biol. 7: S4
-
(2007)
BMC Evol.Biol
, vol.7
, pp. S4
-
-
Lartillot, N.1
Brinkmann, H.2
Philippe, H.3
-
10
-
-
74549195621
-
The hearing gene Prestin unites echolocating bats and whales
-
Li Y, Liu Z, Shi P, Zhang J. (2010). The hearing gene Prestin unites echolocating bats and whales. Curr Biol. 20: R55-R56
-
(2010)
Curr Biol
, vol.20
, pp. R55-R56
-
-
Li, Y.1
Liu, Z.2
Shi, P.3
Zhang, J.4
-
11
-
-
74549224446
-
Convergent sequence evolution between echolocating bats and dolphins
-
Liu Y, Cotton JA, Shen B, Han X, Rossiter SJ, Zhang S. (2010). Convergent sequence evolution between echolocating bats and dolphins. Curr Biol. 20: R53-R54
-
(2010)
Curr Biol
, vol.20
, pp. R53-R54
-
-
Liu, Y.1
Cotton, J.A.2
Shen, B.3
Han, X.4
Rossiter, S.J.5
Zhang, S.6
-
12
-
-
84906733733
-
Parallel sites implicate functional convergence of the hearing gene prestin among echolocating mammals
-
Liu Z, Qi F-Y, Zhou X, Ren H-Q, Shi P. (2014). Parallel sites implicate functional convergence of the hearing gene prestin among echolocating mammals. Mol Biol Evol. 31: 2415-2424
-
(2014)
Mol Biol Evol
, vol.31
, pp. 2415-2424
-
-
Liu, Z.1
Qi, F.-Y.2
Zhou, X.3
Ren, H.-Q.4
Shi, P.5
-
13
-
-
84885574505
-
Genome-wide signatures of convergent evolution in echolocating mammals
-
Parker J, Tsagkogeorga G, Cotton JA, Liu Y, Provero P, Stupka E, Rossiter SJ. (2013). Genome-wide signatures of convergent evolution in echolocating mammals. Nature 502: 228-231
-
(2013)
Nature
, vol.502
, pp. 228-231
-
-
Parker, J.1
Tsagkogeorga, G.2
Cotton, J.A.3
Liu, Y.4
Provero, P.5
Stupka, E.6
Rossiter, S.J.7
-
14
-
-
0037314098
-
R8s: Inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
-
Sanderson MJ. (2003). r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics 19: 301-302
-
(2003)
Bioinformatics
, vol.19
, pp. 301-302
-
-
Sanderson, M.J.1
-
15
-
-
84864063616
-
Parallel evolution of auditory genes for echolocation in bats and toothed whales
-
Shen YY, Lu L, Li GS, Murphy RW, Zhang YP. (2012). Parallel evolution of auditory genes for echolocation in bats and toothed whales. PLoS Genet. 8: e1002788
-
(2012)
Plos Genet
, vol.8
, pp. e1002788
-
-
Shen, Y.Y.1
Lu, L.2
Li, G.S.3
Murphy, R.W.4
Zhang, Y.P.5
-
16
-
-
33750403801
-
Raxml-vi-hpc: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A. (2006). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
17
-
-
84886102011
-
The genetic causes of convergent evolution
-
Stern DL. (2013). The genetic causes of convergent evolution. Nat Rev Genet. 14: 751-764
-
(2013)
Nat Rev Genet
, vol.14
, pp. 751-764
-
-
Stern, D.L.1
-
19
-
-
34547803197
-
Paml 4: Phylogenetic analysis by maximum likelihood
-
Yang Z. (2007). PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24: 1586-1591
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
20
-
-
79952136825
-
Statistical properties of the branch-site test of positive selection
-
Yang Z, dos Reis M. (2011). Statistical properties of the branch-site test of positive selection. Mol Biol Evol. 28: 1217-1228
-
(2011)
Mol Biol Evol
, vol.28
, pp. 1217-1228
-
-
Yang, Z.1
Dos Reis, M.2
-
21
-
-
0031306932
-
Small-sample tests of episodic adaptive evolution: A case study of primate lysozymes
-
Zhang J, Kumar S, Nei M. (1997). Small-sample tests of episodic adaptive evolution: a case study of primate lysozymes. Mol Biol Evol. 14: 1335-1338
-
(1997)
Mol Biol Evol
, vol.14
, pp. 1335-1338
-
-
Zhang, J.1
Kumar, S.2
Nei, M.3
-
22
-
-
84929626960
-
No genome-wide protein sequence convergence for echolocation
-
Zou Z, Zhang J. (2015). No genome-wide protein sequence convergence for echolocation. Mol Biol Evol. 32(5): 1237-1241
-
(2015)
Mol Biol Evol
, vol.32
, Issue.5
, pp. 1237-1241
-
-
Zou, Z.1
Zhang, J.2
|