-
1
-
-
9144252016
-
The gene ontology annotation (GOA) database: Sharing knowledge in uniprot with gene ontology
-
[1] Camon, E.; Magrane, M.; Barrell, D.; Lee, V.; Dimmer, E.; Maslen, J.; Binns, D.; Harte, N.; Lopez, R. and Apweiler, R. The gene ontology annotation (GOA) database: Sharing knowledge in uniprot with gene ontology. Nuclei. Acids Res., 2004, 32, D262-D266.
-
(2004)
Nuclei. Acids Res
, vol.32
, pp. 262-266
-
-
Camon, E.1
Magrane, M.2
Barrell, D.3
Lee, V.4
Dimmer, E.5
Maslen, J.6
Binns, D.7
Harte, N.8
Lopez, R.9
Apweiler, R.10
-
2
-
-
58549112996
-
Bioinformatics enrichment tools: Path toward the comprehensive functional analysis of large gene lists
-
[2] Huang, D.W.; Sherman, B.T. and Lempicki, R.A. Bioinformatics enrichment tools: Path toward the comprehensive functional analysis of large gene lists. Nuclei. Acids Res., 2009, 37(1), 1-13.
-
(2009)
Nuclei. Acids Res
, vol.37
, Issue.1
, pp. 1-13
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
3
-
-
27944474776
-
Erminej: Tool for Functional Analysis of Gene Expression Data Sets
-
[3] Lee, H.K.; Braynen, W.; Keshav, K. and Pavlidis, P. Erminej: Tool for Functional Analysis of Gene Expression Data Sets. BMC Bioinformatics, 2005, 6, 269.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 269
-
-
Lee, H.K.1
Braynen, W.2
Keshav, K.3
Pavlidis, P.4
-
4
-
-
34547799698
-
Easy GO: Gene ontology-based annotation and functional enrichment analysis tool for agronomical species
-
[4] Zhou, X. and Su, Z. Easy GO: Gene ontology-based annotation and functional enrichment analysis tool for agronomical species. BMC Genomics, 2007, 8, 246.
-
(2007)
BMC Genomics
, vol.8
, pp. 246
-
-
Zhou, X.1
Su, Z.2
-
5
-
-
33847205295
-
GENECODIS: A Web-based tool for finding significant concurrent annotations in gene lists
-
[5] Carmona-Saez, P.; Chagoyen, M.; Tirado, F.; Carazo, J.M. and Pascual-Montano, A. GENECODIS: A Web-based tool for finding significant concurrent annotations in gene lists. Genome Biol., 2007, 8, R3.
-
(2007)
Genome Biol
, vol.8
, pp. 3
-
-
Carmona-Saez, P.1
Chagoyen, M.2
Tirado, F.3
Carazo, J.M.4
Pascual-Montano, A.5
-
6
-
-
48449105128
-
CoPub: A literature-based keyword enrichment tool for microarray data analysis
-
[6] Frijters, R.; Heupers, B.; Beek, P.V.; Bouwhuis, M.; Schaik, R.V.; Vlieg, J.D.; Polman, J. and Alkema, W. CoPub: A literature-based keyword enrichment tool for microarray data analysis. Nucl. Acids Res., 2008, 36(2), W406-W410.
-
(2008)
Nucl. Acids Res
, vol.36
, Issue.2
, pp. 406-410
-
-
Frijters, R.1
Heupers, B.2
Beek, P.V.3
Bouwhuis, M.4
Schaik, R.V.5
Vlieg, J.D.6
Polman, J.7
Alkema, W.8
-
7
-
-
48249140621
-
FindPeaks 3.1: A tool for identifying areas of enrichment from massively parallel short-read sequencing technology
-
[7] Fejes, A.P.; Robertson, G.; Bilenky, M.; Varhol, R.; Bainbridge, M. and Jones, S.J.M. FindPeaks 3.1: A tool for identifying areas of enrichment from massively parallel short-read sequencing technology. Bioinf. App. Note, 2008, 24(15), 1729-1730.
-
(2008)
Bioinf. App. Note
, vol.24
, Issue.15
, pp. 1729-1730
-
-
Fejes, A.P.1
Robertson, G.2
Bilenky, M.3
Varhol, R.4
Bainbridge, M.5
Jones, S.6
-
8
-
-
61449162150
-
GeneTrailEx-press: A web-based pipeline for the statistical evaluation of microarray experiments
-
[8] Keller, A.; Backes, C.; Al-Awadhi, M.; Cerasch, A.; Kuntzer, J.; Kohlbacher, O.; Kaufmann, M. and Lenhof, H.P. GeneTrailEx-press: A web-based pipeline for the statistical evaluation of microarray experiments. BMC Bioinformatics, 2008, 9, 552.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 552
-
-
Keller, A.1
Backes, C.2
Al-Awadhi, M.3
Cerasch, A.4
Kuntzer, J.5
Kohlbacher, O.6
Kaufmann, M.7
Lenhof, H.P.8
-
9
-
-
47049099111
-
On-togolizer 2.0: A multifunctional tool for GO term enrichment analysis and data expression
-
[9] Bauer, S.; Grossmann, S.; Vingron, M. and Robinson, P.N. On-togolizer 2.0: A multifunctional tool for GO term enrichment analysis and data expression. Bioinf. App. Note, 2008, 24(14), 1650-1651.
-
(2008)
Bioinf. App. Note
, vol.24
, Issue.14
, pp. 1650-1651
-
-
Bauer, S.1
Grossmann, S.2
Vingron, M.3
Robinson, P.N.4
-
10
-
-
67650754354
-
DIANA-mirPath: Integrating human and mouse microRNAs in pathways
-
[10] Papadopoulos, G.L.; Alexiou, P.; Maragkakis, M.; Reczko, M. and Hatzigeorgiou, A.G. DIANA-mirPath: Integrating human and mouse microRNAs in pathways. Bioinf. App. Note, 2009, 25(15), 1991-1993.
-
(2009)
Bioinf. App. Note
, vol.25
, Issue.15
, pp. 1991-1993
-
-
Papadopoulos, G.L.1
Alexiou, P.2
Maragkakis, M.3
Reczko, M.4
Hatzigeorgiou, A.G.5
-
11
-
-
67649202800
-
GAGE: Generally Applicable Gene Set Enrichment for Pathway Analysis
-
[11] Luo, W.J.; Friedman, M.S.; Shedden, K.; Hankenson, K.D. and Woolf, P.J. GAGE: Generally Applicable Gene Set Enrichment for Pathway Analysis. BMC Bioinf., 2009,10, 161.
-
(2009)
BMC Bioinf
, vol.10
, pp. 161
-
-
Luo, W.J.1
Friedman, M.S.2
Shedden, K.3
Hankenson, K.D.4
Woolf, P.J.5
-
12
-
-
84896132831
-
Causal Analysis Approaches in Ingenuity Pathway Analysis (IPA)
-
[12] Krämer, A.; Green, J.; Pollard, J. and Tugendreich, S. Causal Analysis Approaches in Ingenuity Pathway Analysis (IPA). Bioinformatics, 2013, 703.
-
(2013)
Bioinformatics
, pp. 703
-
-
Krämer, A.1
Green, J.2
Pollard, J.3
Tugendreich, S.4
-
13
-
-
60849139395
-
Gorilla: A tool for discovery and visualization of enriched GO terms in ranked gene lists
-
[13] Eden, E.; Navon, R.; Steinfeld, I.; Lipson, D. and Yakhini, Z. Gorilla: A tool for discovery and visualization of enriched GO terms in ranked gene lists. BMC Bioinf., 2009,10, 48.
-
(2009)
BMC Bioinf
, vol.10
, pp. 48
-
-
Eden, E.1
Navon, R.2
Steinfeld, I.3
Lipson, D.4
Yakhini, Z.5
-
14
-
-
61449203001
-
KEA: Kinase enrichment analysis
-
[14] Lachmann, A.; Ma'ayan, A. KEA: Kinase enrichment analysis. Bioinf. App. Note, 2009, 25(5), 684-686.
-
(2009)
Bioinf. App. Note
, vol.25
, Issue.5
, pp. 684-686
-
-
Lachmann, A.1
Ma'ayan, A.2
-
15
-
-
62549104880
-
SciMiner: Web-based literature mining tool for target identification and functional enrichment analysis
-
[15] Hur, J.; Schuyler, A.D.; States, D.J. and Feldman, E.L. SciMiner: Web-based literature mining tool for target identification and functional enrichment analysis. Bioinf. App. Note, 2009, 25(6), 838-840.
-
(2009)
Bioinf. App. Note
, vol.25
, Issue.6
, pp. 838-840
-
-
Hur, J.1
Schuyler, A.D.2
States, D.J.3
Feldman, E.L.4
-
16
-
-
67849130563
-
ToppGene Suite for Gene List Enrichment Analysis and Candidate Gene Prioritization
-
[16] Chen, J.; Bardes, E.E.; Aronow, B.J. and Jegga, A.G. ToppGene Suite for Gene List Enrichment Analysis and Candidate Gene Prioritization. Nuclei Acids Res., 2009, 37, W305-W311.
-
(2009)
Nuclei Acids Res
, vol.37
, pp. 305-311
-
-
Chen, J.1
Bardes, E.E.2
Aronow, B.J.3
Jegga, A.G.4
-
17
-
-
67849099281
-
WhichGenes: A web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis
-
[17] Glez-Pena, D.; Gomez-Lopez, G.; Pisano, D.G. and Fdez-Riverola, F. WhichGenes: A web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis. Nuclei. Acids Res., 2009, 37, W329-W334.
-
(2009)
Nuclei. Acids Res
, vol.37
, pp. 329-334
-
-
Glez-Pena, D.1
Gomez-Lopez, G.2
Pisano, D.G.3
Fdez-Riverola, F.4
-
18
-
-
84929622734
-
GeneX-plain-Identification of causal biomarkers and drug targets in personalized cancer pathways
-
[18] Kolpakov, F.; Poroikov, V.; Selivanova, G. and Kel, A. GeneX-plain-Identification of causal biomarkers and drug targets in personalized cancer pathways. J. Biomol. Techniq., 2011, 22(Suppl), S16.
-
(2011)
J. Biomol. Techniq
, vol.22
, pp. 16
-
-
Kolpakov, F.1
Poroikov, V.2
Selivanova, G.3
Kel, A.4
-
19
-
-
76949085818
-
ConceptGen: A gene set enrichment and gene set relation mapping tool
-
[19] Sartor, M.A.; Mahavisno, V.; Keshamouni, V.G.; Cavalcoli, J.; Wright, Z.; Karnovsky, A.; Kuick, R.; Jagadish, H.V.; Mirel, B.; Weymouth, T.; Athey, B. and Omenn, G.S. ConceptGen: A gene set enrichment and gene set relation mapping tool. Bioinformatics, 2010, 26(4), 456-463.
-
(2010)
Bioinformatics
, vol.26
, Issue.4
, pp. 456-463
-
-
Sartor, M.A.1
Mahavisno, V.2
Keshamouni, V.G.3
Cavalcoli, J.4
Wright, Z.5
Karnovsky, A.6
Kuick, R.7
Jagadish, H.V.8
Mirel, B.9
Weymouth, T.10
Athey, B.11
Omenn, G.S.12
-
20
-
-
78649775562
-
Eenrichment Map: A network-based method for gene-set enrichment visualization and interpretation
-
[20] Merico, D.; Isserlin, R.; Stueker, O.; Emili, A. and Bader, G.D. Eenrichment Map: A network-based method for gene-set enrichment visualization and interpretation. PloS ONE, 2010, 5(11), e13984.
-
(2010)
Plos ONE
, vol.5
, Issue.11
, pp. 13984
-
-
Merico, D.1
Isserlin, R.2
Stueker, O.3
Emili, A.4
Bader, G.D.5
-
21
-
-
77954300600
-
GSA-SNP: A General Approach for Gene Set Analysis of Polymorphisms
-
[21] Nam, D.G.; Kim, J.; Kim, S.Y. and Kim, S.S. GSA-SNP: A General Approach for Gene Set Analysis of Polymorphisms. Nuclei Acids Res., 2010, 38, W749-W754.
-
(2010)
Nuclei Acids Res
, vol.38
, pp. 749-754
-
-
Nam, D.G.1
Kim, J.2
Kim, S.Y.3
Kim, S.S.4
-
22
-
-
84929634193
-
HEAT: A New Tool for Gene Set Enrichment Analysis Using Comprehensive Annotation of Human Genes in H-InvDB
-
[22] Imanishi, T.; Noda, A.O.; Sera, M. HEAT: A New Tool for Gene Set Enrichment Analysis Using Comprehensive Annotation of Human Genes in H-InvDB. Nat. Preceding, 2010, doi:10.1038/npre.2010.5185.1.
-
(2010)
Nat. Preceding
-
-
Imanishi, T.1
Noda, A.O.2
Sera, M.3
-
23
-
-
77954246243
-
I-GSEA4GWAS: A Web Server for Identification of Pathways/Gene Sets Associated With Traits by Applying an Improved Gene Set Enrichment Analysis to Genome-wide Association Study
-
[23] Zhang, K.L.; Cui, S.J.; Chang, S.H.; Zhang, L.Y. and Wang, J. i-GSEA4GWAS: A Web Server for Identification of Pathways/Gene Sets Associated With Traits by Applying an Improved Gene Set Enrichment Analysis to Genome-wide Association Study. Nuclei Acid Res., 2010, 38(2), W90-W95.
-
(2010)
Nuclei Acid Res
, vol.38
, Issue.2
, pp. 90-95
-
-
Zhang, K.L.1
Cui, S.J.2
Chang, S.H.3
Zhang, L.Y.4
Wang, J.5
-
24
-
-
77957342306
-
Common inherited variation in mitochondrial genes is not enriched for associations with type 2 diabetes or related glycemic traits
-
[24] Segre, A.V.; Groop, L.; Mootha, V.K.; Daly, M.J. and Alsthuler, D. Common inherited variation in mitochondrial genes is not enriched for associations with type 2 diabetes or related glycemic traits. PloS Genetics, 2010, 6(8), e1001058.
-
(2010)
Plos Genetics
, vol.6
, Issue.8
-
-
Segre, A.V.1
Groop, L.2
Mootha, V.K.3
Daly, M.J.4
Alsthuler, D.5
-
25
-
-
84929617924
-
MamPhEA: A web tool for mammalian phenotype enrichment analysis
-
[25] Weng, M.P. and Liao, B.Y. MamPhEA: A web tool for mammalian phenotype enrichment analysis. Genome Biol., 2010, 11(1), P27.
-
(2010)
Genome Biol
, vol.11
, Issue.1
, pp. 27
-
-
Weng, M.P.1
Liao, B.Y.2
-
26
-
-
77956550520
-
MetPA: A Web-based metabolomics tool for pathway analysis and visualization
-
[26] Xia, J.G. and Wishart, D.S. MetPA: A Web-based metabolomics tool for pathway analysis and visualization. Bioinf. App. Note, 2010, 26(18), 2342-2344.
-
(2010)
Bioinf. App. Note
, vol.26
, Issue.18
, pp. 2342-2344
-
-
Xia, J.G.1
Wishart, D.S.2
-
27
-
-
77954256613
-
MSEA: A Web-based Tool to Identify Biologically Meaningful Patterns in Quantitative Metabolomic Data
-
[27] Xia, J.G. and Wishart, D.S. MSEA: A Web-based Tool to Identify Biologically Meaningful Patterns in Quantitative Metabolomic Data. Nuclei Acids Res., 2010, 38, W71-W77.
-
(2010)
Nuclei Acids Res
, vol.38
, pp. 71-77
-
-
Xia, J.G.1
Wishart, D.S.2
-
28
-
-
77953886035
-
PhenoFam-Gene set enrichment analysis through protein structural information
-
[28] Paszkowski-Rogacz, M.; Slabicki, M.; Pisabarro, M.T. and Buchholz, F. PhenoFam-Gene set enrichment analysis through protein structural information. BMC Bioinformatics, 2010, 11, 254.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 254
-
-
Paszkowski-Rogacz, M.1
Slabicki, M.2
Pisabarro, M.T.3
Buchholz, F.4
-
29
-
-
79959271429
-
WebGestalt2: An updated and expanded version of the web-based gene set analysis toolkit
-
[29] Duncan, D.; Prodduturi, N. and Zhang, B. WebGestalt2: An updated and expanded version of the web-based gene set analysis toolkit. BMC Bioinf., 2010,11(4), P10.
-
(2010)
BMC Bioinf
, vol.11
, Issue.4
, pp. 10
-
-
Duncan, D.1
Prodduturi, N.2
Zhang, B.3
-
30
-
-
79951538173
-
GARNET: Gene set analysis with exploration of annotation relation
-
[30] Rho, K.Y.; Kim, B.J.; Jang, G.H.; Bae, T.J.; Seo, J.H.; Seo, C.H.; Lee, J.Y.; Kang, H.J.; Lee, J.Y.; Kang, H.J.; Yu, U.S.; Kim, S.H.; Lee, S.H. and Kim, W.K. GARNET: Gene set analysis with exploration of annotation relation. BMC Bioinformatics, 2011, 12(1), S25.
-
(2011)
BMC Bioinformatics
, vol.12
, Issue.1
, pp. 25
-
-
Rho, K.Y.1
Kim, B.J.2
Jang, G.H.3
Bae, T.J.4
Seo, J.H.5
Seo, C.H.6
Lee, J.Y.7
Kang, H.J.8
Lee, J.Y.9
Kang, H.J.10
Yu, U.S.11
Kim, S.H.12
Lee, S.H.13
Kim, W.K.14
-
31
-
-
79952610099
-
HTSanalyzeR: An R/Bioconductor package for integrated network analysis of high-throughput screens
-
[31] Wang, X.; Terfve, C; Rose, J.C. and Markowetz, F. HTSanalyzeR: An R/Bioconductor package for integrated network analysis of high-throughput screens. Bioinf. App. Note, 2011, 27(6), 879-880.
-
(2011)
Bioinf. App. Note
, vol.27
, Issue.6
, pp. 879-880
-
-
Wang, X.1
Terfve, C.2
Rose, J.C.3
Markowetz, F.4
-
32
-
-
79951999565
-
MBRole: Enrichment analysis of metabolomic data
-
[32] Chaogoyen, M. and Pazos, F. MBRole: Enrichment analysis of metabolomic data. Bioinf. App. Note, 2011, 27(5), 730-731.
-
(2011)
Bioinf. App. Note
, vol.27
, Issue.5
, pp. 730-731
-
-
Chaogoyen, M.1
Pazos, F.2
-
33
-
-
79959441218
-
MPEA: Metabolite pathway enrichment analysis
-
[33] Kankainen, M.; Gopalacharyulu, P.; Holm, L. and Oresic, M. MPEA: Metabolite pathway enrichment analysis. Bioinf. App. Note, 2011, 27(13), 1878-1879.
-
(2011)
Bioinf. App. Note
, vol.27
, Issue.13
, pp. 1878-1879
-
-
Kankainen, M.1
Gopalacharyulu, P.2
Holm, L.3
Oresic, M.4
-
34
-
-
79955991962
-
TAFFEL: Independent Enrichment Analysis of Gene Sets
-
[34] Kurki, M.I.; Paananen, J.; Storvik, M.; Yla-Herttuala, S.; Jaaskelainen, J.E.; Fraunberg, M.V.U.Z.; Wong, G. and Pehkonen, P. TAFFEL: Independent Enrichment Analysis of Gene Sets. BMC Bioinf., 2011, 72, 171.
-
(2011)
BMC Bioinf
, vol.72
, pp. 171
-
-
Kurki, M.I.1
Paananen, J.2
Storvik, M.3
Yla-Herttuala, S.4
Jaaskelainen, J.E.5
Fraunberg, M.6
Wong, G.7
Pehkonen, P.8
-
35
-
-
84865098402
-
GO-Elite: A flexible solution for pathway and ontology over-representation
-
[35] Zambon, A.C.; Gaj, S.; Ho, I.; Hanspers, K.; Vranizan, K.; Evelo, C.T.; Conklin, B.R.; Pico, A.R. and Salomonis, N. GO-Elite: A flexible solution for pathway and ontology over-representation. Bioinformatics, 2012, 28(16), 2209-2210.
-
(2012)
Bioinformatics
, vol.28
, Issue.16
, pp. 2209-2210
-
-
Zambon, A.C.1
Gaj, S.2
Ho, I.3
Hanspers, K.4
Vranizan, K.5
Evelo, C.T.6
Conklin, B.R.7
Pico, A.R.8
Salomonis, N.9
-
36
-
-
84929621788
-
INRICH: Interval-based enrichment analysis for genome-wide association studies
-
[36] Lee, P.H.; Dushlaine, C.O.; Thomas, B. and Purcell, S.M. INRICH: Interval-based enrichment analysis for genome-wide association studies. Bioinf. App. Note, 2012, 28(12), 1798-1799.
-
(2012)
Bioinf. App. Note
, vol.28
, Issue.12
, pp. 1798-1799
-
-
Lee, P.H.1
Dushlaine, C.O.2
Thomas, B.3
Purcell, S.M.4
-
37
-
-
84876100615
-
Enrichr: Interative and collaborative HTML5 gene list enrichment analysis tool
-
[37] Chen, E.Y.; Tan, C.M.; Kou, Y.; Duan, Q.N.; Wang, Z.C.; Meirelles, G.V.; Clark, N.R. and Ma'ayan, A. Enrichr: Interative and collaborative HTML5 gene list enrichment analysis tool. BMC Bioinf., 2013,14, 128.
-
(2013)
BMC Bioinf
, vol.14
, pp. 128
-
-
Chen, E.Y.1
Tan, C.M.2
Kou, Y.3
Duan, Q.N.4
Wang, Z.C.5
Meirelles, G.V.6
Clark, N.R.7
Ma'ayan, A.8
-
38
-
-
77954299992
-
Agrigo: A GO analysis toolkit for the agricultural community
-
[38] Du, Z.; Zhou, X.; Ling, Y.; Zhang, Z.H. and Su, Z. Agrigo: A GO analysis toolkit for the agricultural community. Nuclei Acids Res., 2010, 38(2), W64-W70.
-
(2010)
Nuclei Acids Res
, vol.38
, Issue.2
, pp. 64-70
-
-
Du, Z.1
Zhou, X.2
Ling, Y.3
Zhang, Z.H.4
Su, Z.5
-
39
-
-
67849088720
-
GeneCodis: Interpreting gene lists through enrichment analysis and integration of diverse biological information
-
[39] Nogales-Cadenas, R.; Carnoma-Saez, P.; Vazquez, M.; Vicante, C.; Yang, X.Y.; Tirado, F.; Carazo, J.M. and Pascual-Montano, A. GeneCodis: Interpreting gene lists through enrichment analysis and integration of diverse biological information. Nuclei. Acids Res., 2009, 37, W317-W322.
-
(2009)
Nuclei. Acids Res
, vol.37
, pp. 317-322
-
-
Nogales-Cadenas, R.1
Carnoma-Saez, P.2
Vazquez, M.3
Vicante, C.4
Yang, X.Y.5
Tirado, F.6
Carazo, J.M.7
Pascual-Montano, A.8
-
40
-
-
84864494098
-
GeneCodis3: A non-redundant and modular enrichment analysis tool for functional genomics
-
[40] Tabas-Madrid, D.; Nogales-Cadenas, R. and Pascual-Montano, A. GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomics. Nucleic. Acids Res., 2012, 40(1), W478-W483.
-
(2012)
Nucleic. Acids Res
, vol.40
, Issue.1
, pp. 478-483
-
-
Tabas-Madrid, D.1
Nogales-Cadenas, R.2
Pascual-Montano, A.3
-
41
-
-
84864464973
-
DIANA miRPath v. 2.0: Investigating the combinatorial effect of microRNAs in pathways
-
[41] Vlachos, I.S.; Kostoulas, N.; Vergoulis, T.; Georgakilas, G.; Reczko, M.; Maragkakis, M.; Paraskevopoulou, M.D.; Prionidis, K.; Dalamagas, T. and Hatzigeorgiou, A. G. DIANA miRPath v. 2.0: investigating the combinatorial effect of microRNAs in pathways. Nucleic Acids Res., 2012, 40(W1), W498-W504.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.1
, pp. 498-504
-
-
Vlachos, I.S.1
Kostoulas, N.2
Vergoulis, T.3
Georgakilas, G.4
Reczko, M.5
Maragkakis, M.6
Paraskevopoulou, M.D.7
Prionidis, K.8
Dalamagas, T.9
Hatzigeorgiou, A.G.10
-
42
-
-
84929634194
-
-
Department of bioengineering and bioinformatics of MV Lomonosov Moscow State University
-
[42] Valeev, T.; Ryabova, A.; Tolstyh, N.; Kolpakov, F. and Kel, A. GeneXplain platform for systems medicine. Department of bioengineering and bioinformatics of MV Lomonosov Moscow State University, 2011, 156.
-
(2011)
Genexplain Platform for Systems Medicine
, pp. 156
-
-
Valeev, T.1
Ryabova, A.2
Tolstyh, N.3
Kolpakov, F.4
Kel, A.5
-
43
-
-
84880617636
-
Web-based gene set analysis toolkit (WebGestalt): Update 2013
-
[43] Wang, J.; Duncan, D.; Shi, Z. and Zhang, B. Web-based gene set analysis toolkit (WebGestalt): Update 2013. Nucleic Acids Res., 2013, 41(W1), W77-W83.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.1
, pp. 77-83
-
-
Wang, J.1
Duncan, D.2
Shi, Z.3
Zhang, B.4
-
44
-
-
0032919364
-
KEGG: Kyoto encyclopedia of genes and genomes
-
[44] Ogata, H.; Goto, S.; Sato, K.; Fujibuchi, W.; Bono, H. and Kane-hisa, M. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res., 1999, 27(1), 29-34.
-
(1999)
Nucleic Acids Res
, vol.27
, Issue.1
, pp. 29-34
-
-
Ogata, H.1
Goto, S.2
Sato, K.3
Fujibuchi, W.4
Bono, H.5
Kane-Hisa, M.6
-
45
-
-
13444259844
-
Reactome: A knowledgebase of biological pathways
-
[45] Joshi-Tope, G.; Gillespie, M.; Vastrik, I.; D'Eustachio, P.; Schmidt, E.; de Bono, B.; Jassal, B.; Gopinath, G.R.; Wu, G.R.; Matthews, L.; Lewis, S.; Birney, E. and Stein, L. Reactome: A knowledgebase of biological pathways. Nucleic Acid Res., 2005, 33, 1-10.
-
(2005)
Nucleic Acid Res
, vol.33
, pp. 1-10
-
-
Joshi-Tope, G.1
Gillespie, M.2
Vastrik, I.3
D'eustachio, P.4
Schmidt, E.5
De Bono, B.6
Jassal, B.7
Gopinath, G.R.8
Wu, G.R.9
Matthews, L.10
Lewis, S.11
Birney, E.12
Stein, L.13
-
46
-
-
0036081146
-
DBTSS: Database of human transcriptional start sites and full-length cDNAs
-
[46] Suzuki, Y.; Yamashita, R.; Nakai, K. and Sugano, S. DBTSS: Database of human transcriptional start sites and full-length cDNAs. Nuclei Acids Res., 2002, 30(1), 328-331.
-
(2002)
Nuclei Acids Res
, vol.30
, Issue.1
, pp. 328-331
-
-
Suzuki, Y.1
Yamashita, R.2
Nakai, K.3
Sugano, S.4
-
47
-
-
4344623260
-
Integrative annotation of 21,037 human genes validated by full-length cDNA Clones
-
[47] Imanishi, T.; Itoh, T.; Suzuki, Y.; O'Donovan, C.; Fukuchi, S.; et al. Integrative annotation of 21,037 human genes validated by full-length cDNA Clones. PloSBiol., 2004, 2(6), e162.
-
(2004)
Plosbiol
, vol.2
, Issue.6
, pp. 162
-
-
Imanishi, T.1
Itoh, T.2
Suzuki, Y.3
O'donovan, C.4
Fukuchi, S.5
-
48
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
[48] Subramanian, A.; Tamayo, P.; Mootha, V.K.; Mukherjee, S.; Ebert, B.L.; Gillette, M.A.; Paulovich, A.; Pomeroy, S.L.; Golub, T.R.; Lander, E.S. and Mesirov, J.P. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proc. Nat. Acad. Sci. USA, 2005,102, 15545-15550.
-
(2005)
Proc. Nat. Acad. Sci. USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
Tamayo, P.2
Mootha, V.K.3
Mukherjee, S.4
Ebert, B.L.5
Gillette, M.A.6
Paulovich, A.7
Pomeroy, S.L.8
Golub, T.R.9
Lander, E.S.10
Mesirov, J.P.11
-
49
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
[49] Kanehisa, M.; Goto, S.; Sato, Y.; Furumichi, M. and Tanabe, M. KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res., 2011, 40, 109-114.
-
(2011)
Nucleic Acids Res
, vol.40
, pp. 109-114
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
50
-
-
70449515104
-
KEGGconverter: A tool for the in-silico modelling of metabolic networks of the KEGG pathways database
-
[50] Moutselos, K.; Kanaris, I.; Chatziioannou, A.; Maglogiannis, I. and Kolisis, F.N. KEGGconverter: A tool for the in-silico modelling of metabolic networks of the KEGG pathways database. BMC Bioin- form., 2009, 10, 324.
-
(2009)
BMC Bioin- Form
, vol.10
, pp. 324
-
-
Moutselos, K.1
Kanaris, I.2
Chatziioannou, A.3
Maglogiannis, I.4
Kolisis, F.N.5
-
51
-
-
78651275182
-
Reactome: A database of reactions, pathways and biological processes
-
[51] Croft, D.; O'Kelly, G.; Wu, G.; Haw, R.; Gillespie, M.; Matthews A; Caudy, M.; Garapati, P.; Gopinath, G.; Jassal, B.; Jupe, S.; Kalatskaya, I.; Mahajan, S.; May, B.; Ndegwa, N.; Schmidt, E.; Shamovsky, V.; Yung, C.; Birney, E.; Hermjakob, H.; D'Eustachio, P. and Stein, L. Reactome: A database of reactions, pathways and biological processes. Nucleic Acids Res., 2010, 39, 691-697.
-
(2010)
Nucleic Acids Res
, vol.39
, pp. 691-697
-
-
Croft, D.1
O'kelly, G.2
Wu, G.3
Haw, R.4
Gillespie, M.5
Matthews, A.6
Caudy, M.7
Garapati, P.8
Gopinath, G.9
Jassal, B.10
Jupe, S.11
Kalatskaya, I.12
Mahajan, S.13
May, B.14
Ndegwa, N.15
Schmidt, E.16
Shamovsky, V.17
Yung, C.18
Birney, E.19
Hermjakob, H.20
D'eustachio, P.21
Stein, L.22
more..
-
52
-
-
84876572333
-
H-InvDB IN 2013: An Omics study platform for human functional gene and transcript discovery
-
[52] Takeda, J.; Yamasaki, C.; Murakami, K.; Nagai, Y.; Sera, M.; Hara, Y.; Obi, N.; Habara, T.; Gojobori, T. and Imanishi1, T. H-InvDB IN 2013: An Omics study platform for human functional gene and transcript discovery. Nucleic Acids Res., 2012, 41, 915-919.
-
(2012)
Nucleic Acids Res
, vol.41
, pp. 915-919
-
-
Takeda, J.1
Yamasaki, C.2
Murakami, K.3
Nagai, Y.4
Sera, M.5
Hara, Y.6
Obi, N.7
Habara, T.8
Gojobori, T.9
Imanishi1, T.10
-
53
-
-
79958135926
-
-
[53] Liberzon, A.; Subramanian, A.; Pinchback, R.; Thorvaldsdottir, H.; Tamayo, P. and Mesirov, J.P. Molecular signatures database (Msigdb) 3.0, 2011, 27, 1739-1740.
-
(2011)
Molecular Signatures Database (Msigdb) 3.0
, vol.27
, pp. 1739-1740
-
-
Liberzon, A.1
Subramanian, A.2
Pinchback, R.3
Thorvaldsdottir, H.4
Tamayo, P.5
Mesirov, J.P.6
|