-
1
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander, E.S., Linton, L.M., Birren, B., Nusbaum, C., Zody, M.C., Baldwin, J., Devon, K., Dewar, K., Doyle, M., FitzHugh, W. et al. (2001) Initial sequencing and analysis of the human genome. Nature, 409, 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
Devon, K.7
Dewar, K.8
Doyle, M.9
FitzHugh, W.10
-
2
-
-
9144252038
-
Complete sequencing and characterization of 21,243 full-length human cDNAs
-
Ota, T., Suzuki, Y., Nishikawa, T., Otsuki, T., Sugiyama, T., Irie, R., Wakamatsu, A., Hayashi, K., Sato, H., Nagai, K. et al. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. Nat. Genet., 36, 40-45.
-
(2004)
Nat. Genet.
, vol.36
, pp. 40-45
-
-
Ota, T.1
Suzuki, Y.2
Nishikawa, T.3
Otsuki, T.4
Sugiyama, T.5
Irie, R.6
Wakamatsu, A.7
Hayashi, K.8
Sato, H.9
Nagai, K.10
-
3
-
-
0347125203
-
HUGE: A database for human KIAA proteins, a 2004 update integrating HUGEppi and ROUGE
-
Kikuno, R., Nagase, T., Nakayama, M., Koga, H., Okazaki, N., Nakajima, D. and Ohara, O. (2004) HUGE: a database for human KIAA proteins, a 2004 update integrating HUGEppi and ROUGE. Nucleic Acids Res., 32, D502-D504.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Kikuno, R.1
Nagase, T.2
Nakayama, M.3
Koga, H.4
Okazaki, N.5
Nakajima, D.6
Ohara, O.7
-
4
-
-
73249119724
-
The completion of the Mammalian Gene Collection (MGC)
-
Temple, G., Gerhard, D.S., Rasooly, R., Feingold, E.A., Good, P.J., Robinson, C., Mandich, A., Derge, J.G., Lewis, J., Shoaf, D. et al. (2009) The completion of the Mammalian Gene Collection (MGC). Genome Res., 19, 2324-2333.
-
(2009)
Genome Res.
, vol.19
, pp. 2324-2333
-
-
Temple, G.1
Gerhard, D.S.2
Rasooly, R.3
Feingold, E.A.4
Good, P.J.5
Robinson, C.6
Mandich, A.7
Derge, J.G.8
Lewis, J.9
Shoaf, D.10
-
5
-
-
38549170927
-
MIPS: Analysis and annotation of genome information in 2007
-
Mewes, H.W., Dietmann, S., Frishman, D., Gregory, R., Mannhaupt, G., Mayer, K.F., Munsterkotter, M., Ruepp, A., Spannagl, M., Stumpflen, V. et al. (2008) MIPS: analysis and annotation of genome information in 2007. Nucleic Acids Res., 36, D196-D201.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Mewes, H.W.1
Dietmann, S.2
Frishman, D.3
Gregory, R.4
Mannhaupt, G.5
Mayer, K.F.6
Munsterkotter, M.7
Ruepp, A.8
Spannagl, M.9
Stumpflen, V.10
-
6
-
-
0033782920
-
Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells
-
Zhang, Q.H., Ye, M., Wu, X.Y., Ren, S.X., Zhao, M., Zhao, C.J., Fu, G., Shen, Y., Fan, H.Y., Lu, G. et al. (2000) Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. Genome Res., 10, 1546-1560.
-
(2000)
Genome Res.
, vol.10
, pp. 1546-1560
-
-
Zhang, Q.H.1
Ye, M.2
Wu, X.Y.3
Ren, S.X.4
Zhao, M.5
Zhao, C.J.6
Fu, G.7
Shen, Y.8
Fan, H.Y.9
Lu, G.10
-
7
-
-
4344623260
-
Integrative annotation of 21,037 human genes validated by full-length cDNA clones
-
Imanishi, T., Itoh, T., Suzuki, Y., O'Donovan, C., Fukuchi, S., Koyanagi, K.O., Barrero, R.A., Tamura, T., Yamaguchi-Kabata, Y., Tanino, M. et al. (2004) Integrative annotation of 21,037 human genes validated by full-length cDNA clones. PLoS Biol., 2, e162.
-
(2004)
PLoS Biol.
, vol.2
-
-
Imanishi, T.1
Itoh, T.2
Suzuki, Y.3
O'Donovan, C.4
Fukuchi, S.5
Koyanagi, K.O.6
Barrero, R.A.7
Tamura, T.8
Yamaguchi-Kabata, Y.9
Tanino, M.10
-
8
-
-
75549085982
-
H-InvDB in 2009: Extended database and data mining resources for human genes and transcripts
-
Yamasaki, C., Murakami, K., Takeda, J., Sato, Y., Noda, A., Sakate, R., Habara, T., Nakaoka, H., Todokoro, F., Matsuya, A. et al. (2010) H-InvDB in 2009: extended database and data mining resources for human genes and transcripts. Nucleic Acids Res., 38, D626-D632.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Yamasaki, C.1
Murakami, K.2
Takeda, J.3
Sato, Y.4
Noda, A.5
Sakate, R.6
Habara, T.7
Nakaoka, H.8
Todokoro, F.9
Matsuya, A.10
-
9
-
-
33747861691
-
TACT: Transcriptome auto-annotation conducting tool of H-InvDB
-
Yamasaki, C., Kawashima, H., Todokoro, F., Imamizu, Y., Ogawa, M., Tanino, M., Itoh, T., Gojobori, T. and Imanishi, T. (2006) TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB. Nucleic Acids Res., 34, W345-W349.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Yamasaki, C.1
Kawashima, H.2
Todokoro, F.3
Imamizu, Y.4
Ogawa, M.5
Tanino, M.6
Itoh, T.7
Gojobori, T.8
Imanishi, T.9
-
10
-
-
13444252790
-
The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms
-
Tanino, M., Debily, M.A., Tamura, T., Hishiki, T., Ogasawara, O., Murakawa, K., Kawamoto, S., Itoh, K., Watanabe, S., de Souza, S.J. et al. (2005) The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms. Nucleic Acids Res., 33, D567-D572.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Tanino, M.1
Debily, M.A.2
Tamura, T.3
Hishiki, T.4
Ogasawara, O.5
Murakawa, K.6
Kawamoto, S.7
Itoh, K.8
Watanabe, S.9
De Souza, S.J.10
-
11
-
-
38549086993
-
Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees
-
Matsuya, A., Sakate, R., Kawahara, Y., Koyanagi, K.O., Sato, Y., Fujii, Y., Yamasaki, C., Habara, T., Nakaoka, H., Todokoro, F. et al. (2008) Evola: ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees. Nucleic Acids Res., 36, D787-D792.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Matsuya, A.1
Sakate, R.2
Kawahara, Y.3
Koyanagi, K.O.4
Sato, Y.5
Fujii, Y.6
Yamasaki, C.7
Habara, T.8
Nakaoka, H.9
Todokoro, F.10
-
12
-
-
58149189858
-
VarySysDB: A human genetic polymorphism database based on all H-InvDB transcripts
-
Shimada, M.K., Matsumoto, R., Hayakawa, Y., Sanbonmatsu, R., Gough, C., Yamaguchi-Kabata, Y., Yamasaki, C., Imanishi, T. and Gojobori, T. (2009) VarySysDB: a human genetic polymorphism database based on all H-InvDB transcripts. Nucleic Acids Res., 37, D810-D815.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Shimada, M.K.1
Matsumoto, R.2
Hayakawa, Y.3
Sanbonmatsu, R.4
Gough, C.5
Yamaguchi-Kabata, Y.6
Yamasaki, C.7
Imanishi, T.8
Gojobori, T.9
-
13
-
-
75549090156
-
H-DBAS: Human-transcriptome database for alternative splicing: Update 2010
-
Takeda, J., Suzuki, Y., Sakate, R., Sato, Y., Gojobori, T., Imanishi, T. and Sugano, S. (2010) H-DBAS: human-transcriptome database for alternative splicing: update 2010. Nucleic Acids Res., 38, D86-D90.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Takeda, J.1
Suzuki, Y.2
Sakate, R.3
Sato, Y.4
Gojobori, T.5
Imanishi, T.6
Sugano, S.7
-
14
-
-
67849110019
-
Hyperlink Management System and ID Converter System: Enabling maintenance-free hyperlinks among major biological databases
-
Imanishi, T. and Nakaoka, H. (2009) Hyperlink Management System and ID Converter System: enabling maintenance-free hyperlinks among major biological databases. Nucleic Acids Res., 37, W17-W22.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Imanishi, T.1
Nakaoka, H.2
-
15
-
-
84862212825
-
The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments
-
Kodama, Y., Mashima, J., Kaminuma, E., Gojobori, T., Ogasawara, O., Takagi, T., Okubo, K. and Nakamura, Y. (2012) The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments. Nucleic Acids Res., 40, D38-D42.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Kodama, Y.1
Mashima, J.2
Kaminuma, E.3
Gojobori, T.4
Ogasawara, O.5
Takagi, T.6
Okubo, K.7
Nakamura, Y.8
-
16
-
-
84859865967
-
The UCSC Genome Browser database: Extensions and updates 2011
-
Dreszer, T.R., Karolchik, D., Zweig, A.S., Hinrichs, A.S., Raney, B.J., Kuhn, R.M., Meyer, L.R., Wong, M., Sloan, C.A., Rosenbloom, K.R. et al. (2012) The UCSC Genome Browser database: extensions and updates 2011. Nucleic Acids Res., 40, D918-D923.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Dreszer, T.R.1
Karolchik, D.2
Zweig, A.S.3
Hinrichs, A.S.4
Raney, B.J.5
Kuhn, R.M.6
Meyer, L.R.7
Wong, M.8
Sloan, C.A.9
Rosenbloom, K.R.10
-
17
-
-
84860833500
-
Reorganizing the protein space at the Universal Protein Resource (UniProt)
-
The UniProt Consortium
-
The UniProt Consortium. (2011) Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res., 40, D71-D75.
-
(2011)
Nucleic Acids Res.
, vol.40
-
-
-
18
-
-
84858602406
-
InterPro in 2011: New developments in the family and domain prediction database
-
Hunter, S., Jones, P., Mitchell, A., Apweiler, R., Attwood, T.K., Bateman, A., Bernard, T., Binns, D., Bork, P., Burge, S. et al. (2011) InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res., 40, D306-D312.
-
(2011)
Nucleic Acids Res.
, vol.40
-
-
Hunter, S.1
Jones, P.2
Mitchell, A.3
Apweiler, R.4
Attwood, T.K.5
Bateman, A.6
Bernard, T.7
Binns, D.8
Bork, P.9
Burge, S.10
-
19
-
-
84859699831
-
The gene ontology: Enhancements for 2011
-
Gene Ontology Consortium
-
Gene Ontology Consortium. (2012) The Gene Ontology: enhancements for 2011. Nucleic Acids Res., 40, D559-D564.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
-
20
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
Kanehisa, M., Goto, S., Sato, Y., Furumichi, M. and Tanabe, M. (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res., 40, D109-D114.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
21
-
-
38549153238
-
Data growth and its impact on the SCOP database: New developments
-
Andreeva, A., Howorth, D., Chandonia, J.M., Brenner, S.E., Hubbard, T.J., Chothia, C. and Murzin, A.G. (2008) Data growth and its impact on the SCOP database: new developments. Nucleic Acids Res., 36, D419-D425.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Andreeva, A.1
Howorth, D.2
Chandonia, J.M.3
Brenner, S.E.4
Hubbard, T.J.5
Chothia, C.6
Murzin, A.G.7
-
22
-
-
75549083247
-
JASPAR 2010: The greatly expanded open-access database of transcription factor binding profiles
-
Portales-Casamar, E., Thongjuea, S., Kwon, A.T., Arenillas, D., Zhao, X., Valen, E., Yusuf, D., Lenhard, B., Wasserman, W.W. and Sandelin, A. (2010) JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles. Nucleic Acids Res., 38, D105-D110.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Portales-Casamar, E.1
Thongjuea, S.2
Kwon, A.T.3
Arenillas, D.4
Zhao, X.5
Valen, E.6
Yusuf, D.7
Lenhard, B.8
Wasserman, W.W.9
Sandelin, A.10
-
23
-
-
84859436530
-
NCBI Reference Sequences (RefSeq): Current status, new features and genome annotation policy
-
Pruitt, K.D., Tatusova, T., Brown, G.R. and Maglott, D.R. (2012) NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res., 40, D130-D135.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Pruitt, K.D.1
Tatusova, T.2
Brown, G.R.3
Maglott, D.R.4
-
24
-
-
84858221706
-
Ensembl 2012
-
Flicek, P., Amode, M.R., Barrell, D., Beal, K., Brent, S., Carvalho-Silva, D., Clapham, P., Coates, G., Fairley, S., Fitzgerald, S. et al. (2012) Ensembl 2012. Nucleic Acids Res., 40, D84-D90.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Flicek, P.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Brent, S.5
Carvalho-Silva, D.6
Clapham, P.7
Coates, G.8
Fairley, S.9
Fitzgerald, S.10
-
25
-
-
67650064594
-
The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes
-
Pruitt, K.D., Harrow, J., Harte, R.A., Wallin, C., Diekhans, M., Maglott, D.R., Searle, S., Farrell, C.M., Loveland, J.E., Ruef, B.J. et al. (2009) The consensus coding sequence (CCDS) project: identifying a common protein-coding gene set for the human and mouse genomes. Genome Res., 19, 1316-1323.
-
(2009)
Genome Res.
, vol.19
, pp. 1316-1323
-
-
Pruitt, K.D.1
Harrow, J.2
Harte, R.A.3
Wallin, C.4
Diekhans, M.5
Maglott, D.R.6
Searle, S.7
Farrell, C.M.8
Loveland, J.E.9
Ruef, B.J.10
-
26
-
-
79954986866
-
A new face and new challenges for Online Mendelian Inheritance in Man (OMIM(R))
-
Amberger, J., Bocchini, C. and Hamosh, A. (2011) A new face and new challenges for Online Mendelian Inheritance in Man (OMIM(R)). Hum. Mutat., 32, 564-567.
-
(2011)
Hum. Mutat.
, vol.32
, pp. 564-567
-
-
Amberger, J.1
Bocchini, C.2
Hamosh, A.3
-
27
-
-
0037685263
-
Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins
-
Kaji, H., Saito, H., Yamauchi, Y., Shinkawa, T., Taoka, M., Hirabayashi, J., Kasai, K., Takahashi, N. and Isobe, T. (2003) Lectin affinity capture, isotope-coded tagging and mass spectrometry to identify N-linked glycoproteins. Nat. Biotechnol., 21, 667-672.
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 667-672
-
-
Kaji, H.1
Saito, H.2
Yamauchi, Y.3
Shinkawa, T.4
Taoka, M.5
Hirabayashi, J.6
Kasai, K.7
Takahashi, N.8
Isobe, T.9
-
28
-
-
84862233435
-
HGPD: Human Gene and Protein Database, 2012 update
-
Maruyama, Y., Kawamura, Y., Nishikawa, T., Isogai, T., Nomura, N. and Goshima, N. (2012) HGPD: Human Gene and Protein Database, 2012 update. Nucleic Acids Res., 40, D924-D929.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Maruyama, Y.1
Kawamura, Y.2
Nishikawa, T.3
Isogai, T.4
Nomura, N.5
Goshima, N.6
-
29
-
-
84878636136
-
PCDq: Human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from H-Invitational protein-protein interactions integrative dataset
-
in press
-
Kikugawa, S., Nishikata, K., Murakami, K., Sato, Y., Suzuki, M., Altaf-Ul-Amin, M., Kanaya, S. and Imanishi, T. (2012) PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from H-Invitational protein-protein interactions integrative dataset. BMC Syst. Biol., in press.
-
(2012)
BMC Syst. Biol.
-
-
Kikugawa, S.1
Nishikata, K.2
Murakami, K.3
Sato, Y.4
Suzuki, M.5
Altaf-Ul-Amin, M.6
Kanaya, S.7
Imanishi, T.8
|