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Volumn 17, Issue 5, 2015, Pages 716-725

Integrating chemical mutagenesis and whole-genome sequencing as a platform for forward and reverse genetic analysis of Chlamydia

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; F ACTIN; PROTEIN 14 3 3; GENETIC MARKER;

EID: 84929510811     PISSN: 19313128     EISSN: 19346069     Source Type: Journal    
DOI: 10.1016/j.chom.2015.03.014     Document Type: Article
Times cited : (106)

References (60)
  • 1
    • 84874132591 scopus 로고    scopus 로고
    • A C. Trachomatis cloning vector and the generation of C. Trachomatis strains expressing fluorescent proteins under the control of a C. Trachomatis promoter
    • H. Agaisse, and I. Derré A C. trachomatis cloning vector and the generation of C. trachomatis strains expressing fluorescent proteins under the control of a C. trachomatis promoter PLoS ONE 8 2013 e57090
    • (2013) PLoS ONE , vol.8 , pp. e57090
    • Agaisse, H.1    Derré, I.2
  • 3
    • 69149083126 scopus 로고    scopus 로고
    • Chlamydial infection of immune cells: Altered function and implications for disease
    • K.W. Beagley, W.M. Huston, P.M. Hansbro, and P. Timms Chlamydial infection of immune cells: altered function and implications for disease Crit. Rev. Immunol. 29 2009 275 305
    • (2009) Crit. Rev. Immunol. , vol.29 , pp. 275-305
    • Beagley, K.W.1    Huston, W.M.2    Hansbro, P.M.3    Timms, P.4
  • 4
    • 34547100092 scopus 로고    scopus 로고
    • SNAP: Predict effect of non-synonymous polymorphisms on function
    • Y. Bromberg, and B. Rost SNAP: predict effect of non-synonymous polymorphisms on function Nucleic Acids Res. 35 2007 3823 3835
    • (2007) Nucleic Acids Res. , vol.35 , pp. 3823-3835
    • Bromberg, Y.1    Rost, B.2
  • 5
    • 84903550840 scopus 로고    scopus 로고
    • Multinucleation during C. Trachomatis infections is caused by the contribution of two effector pathways
    • H.M. Brown, A.E. Knowlton, E. Snavely, B.D. Nguyen, T.S. Richards, and S.S. Grieshaber Multinucleation during C. trachomatis infections is caused by the contribution of two effector pathways PLoS ONE 9 2014 e100763
    • (2014) PLoS ONE , vol.9 , pp. e100763
    • Brown, H.M.1    Knowlton, A.E.2    Snavely, E.3    Nguyen, B.D.4    Richards, T.S.5    Grieshaber, S.S.6
  • 6
    • 25444493846 scopus 로고    scopus 로고
    • Comparative genomic analysis of Chlamydia trachomatis oculotropic and genitotropic strains
    • J.H. Carlson, S.F. Porcella, G. McClarty, and H.D. Caldwell Comparative genomic analysis of Chlamydia trachomatis oculotropic and genitotropic strains Infect. Immun. 73 2005 6407 6418
    • (2005) Infect. Immun. , vol.73 , pp. 6407-6418
    • Carlson, J.H.1    Porcella, S.F.2    McClarty, G.3    Caldwell, H.D.4
  • 7
    • 33746656236 scopus 로고    scopus 로고
    • The hypothetical protein CT813 is localized in the Chlamydia trachomatis inclusion membrane and is immunogenic in women urogenitally infected with C. Trachomatis
    • C. Chen, D. Chen, J. Sharma, W. Cheng, Y. Zhong, K. Liu, J. Jensen, R. Shain, B. Arulanandam, and G. Zhong The hypothetical protein CT813 is localized in the Chlamydia trachomatis inclusion membrane and is immunogenic in women urogenitally infected with C. trachomatis Infect. Immun. 74 2006 4826 4840
    • (2006) Infect. Immun. , vol.74 , pp. 4826-4840
    • Chen, C.1    Chen, D.2    Sharma, J.3    Cheng, W.4    Zhong, Y.5    Liu, K.6    Jensen, J.7    Shain, R.8    Arulanandam, B.9    Zhong, G.10
  • 8
    • 84866172218 scopus 로고    scopus 로고
    • CPAF: A Chlamydial protease in search of an authentic substrate
    • A.L. Chen, K.A. Johnson, J.K. Lee, C. Sütterlin, and M. Tan CPAF: a Chlamydial protease in search of an authentic substrate PLoS Pathog. 8 2012 e1002842
    • (2012) PLoS Pathog. , vol.8 , pp. e1002842
    • Chen, A.L.1    Johnson, K.A.2    Lee, J.K.3    Sütterlin, C.4    Tan, M.5
  • 9
    • 84897692384 scopus 로고    scopus 로고
    • The Chlamydia trachomatis type III secretion chaperone Slc1 engages multiple early effectors, including TepP, a tyrosine-phosphorylated protein required for the recruitment of CrkI-II to nascent inclusions and innate immune signaling
    • Y.S. Chen, R.J. Bastidas, H.A. Saka, V.K. Carpenter, K.L. Richards, G.V. Plano, and R.H. Valdivia The Chlamydia trachomatis type III secretion chaperone Slc1 engages multiple early effectors, including TepP, a tyrosine-phosphorylated protein required for the recruitment of CrkI-II to nascent inclusions and innate immune signaling PLoS Pathog. 10 2014 e1003954
    • (2014) PLoS Pathog. , vol.10 , pp. e1003954
    • Chen, Y.S.1    Bastidas, R.J.2    Saka, H.A.3    Carpenter, V.K.4    Richards, K.L.5    Plano, G.V.6    Valdivia, R.H.7
  • 10
    • 84867421419 scopus 로고    scopus 로고
    • Actin recruitment to the Chlamydia inclusion is spatiotemporally regulated by a mechanism that requires host and bacterial factors
    • E. Chin, K. Kirker, M. Zuck, G. James, and K. Hybiske Actin recruitment to the Chlamydia inclusion is spatiotemporally regulated by a mechanism that requires host and bacterial factors PLoS ONE 7 2012 e46949
    • (2012) PLoS ONE , vol.7 , pp. e46949
    • Chin, E.1    Kirker, K.2    Zuck, M.3    James, G.4    Hybiske, K.5
  • 13
    • 28044453071 scopus 로고    scopus 로고
    • Recent insights into the mechanisms of Chlamydia entry
    • A. Dautry-Varsat, A. Subtil, and T. Hackstadt Recent insights into the mechanisms of Chlamydia entry Cell. Microbiol. 7 2005 1714 1722
    • (2005) Cell. Microbiol. , vol.7 , pp. 1714-1722
    • Dautry-Varsat, A.1    Subtil, A.2    Hackstadt, T.3
  • 14
    • 79959845500 scopus 로고    scopus 로고
    • The lipid transfer protein CERT interacts with the Chlamydia inclusion protein IncD and participates to ER-Chlamydia inclusion membrane contact sites
    • I. Derré, R. Swiss, and H. Agaisse The lipid transfer protein CERT interacts with the Chlamydia inclusion protein IncD and participates to ER-Chlamydia inclusion membrane contact sites PLoS Pathog. 7 2011 e1002092
    • (2011) PLoS Pathog. , vol.7 , pp. e1002092
    • Derré, I.1    Swiss, R.2    Agaisse, H.3
  • 15
    • 79957473559 scopus 로고    scopus 로고
    • ARF family G proteins and their regulators: Roles in membrane transport, development and disease
    • J.G. Donaldson, and C.L. Jackson ARF family G proteins and their regulators: roles in membrane transport, development and disease Nat. Rev. Mol. Cell Biol. 12 2011 362 375
    • (2011) Nat. Rev. Mol. Cell Biol. , vol.12 , pp. 362-375
    • Donaldson, J.G.1    Jackson, C.L.2
  • 17
    • 80053446744 scopus 로고    scopus 로고
    • Chlamydia trachomatis co-opts GBF1 and CERT to acquire host sphingomyelin for distinct roles during intracellular development
    • C.A. Elwell, S. Jiang, J.H. Kim, A. Lee, T. Wittmann, K. Hanada, P. Melancon, and J.N. Engel Chlamydia trachomatis co-opts GBF1 and CERT to acquire host sphingomyelin for distinct roles during intracellular development PLoS Pathog. 7 2011 e1002198
    • (2011) PLoS Pathog. , vol.7 , pp. e1002198
    • Elwell, C.A.1    Jiang, S.2    Kim, J.H.3    Lee, A.4    Wittmann, T.5    Hanada, K.6    Melancon, P.7    Engel, J.N.8
  • 18
    • 0029034043 scopus 로고
    • Lipid metabolism in Chlamydia trachomatis-infected cells: Directed trafficking of Golgi-derived sphingolipids to the chlamydial inclusion
    • T. Hackstadt, M.A. Scidmore, and D.D. Rockey Lipid metabolism in Chlamydia trachomatis-infected cells: directed trafficking of Golgi-derived sphingolipids to the chlamydial inclusion Proc. Natl. Acad. Sci. USA 92 1995 4877 4881
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 4877-4881
    • Hackstadt, T.1    Scidmore, M.A.2    Rockey, D.D.3
  • 19
    • 0029871027 scopus 로고    scopus 로고
    • Chlamydia trachomatis interrupts an exocytic pathway to acquire endogenously synthesized sphingomyelin in transit from the Golgi apparatus to the plasma membrane
    • T. Hackstadt, D.D. Rockey, R.A. Heinzen, and M.A. Scidmore Chlamydia trachomatis interrupts an exocytic pathway to acquire endogenously synthesized sphingomyelin in transit from the Golgi apparatus to the plasma membrane EMBO J. 15 1996 964 977
    • (1996) EMBO J. , vol.15 , pp. 964-977
    • Hackstadt, T.1    Rockey, D.D.2    Heinzen, R.A.3    Scidmore, M.A.4
  • 21
    • 0002229143 scopus 로고    scopus 로고
    • Developmental biology
    • R.S. Stephens, American Society for Microbiology Press Washington, DC
    • T.P. Hatch Developmental biology R.S. Stephens, Chlamydia: Intracellular Biology, Pathogenesis, and Immunity 1999 American Society for Microbiology Press Washington, DC 69 100
    • (1999) Chlamydia: Intracellular Biology, Pathogenesis, and Immunity , pp. 69-100
    • Hatch, T.P.1
  • 22
    • 35348914871 scopus 로고    scopus 로고
    • Tackling the intractable - Approaching the genetics of Chlamydiales
    • D. Heuer, C. Kneip, A.P. Mäurer, and T.F. Meyer Tackling the intractable - approaching the genetics of Chlamydiales Int. J. Med. Microbiol. 297 2007 569 576
    • (2007) Int. J. Med. Microbiol. , vol.297 , pp. 569-576
    • Heuer, D.1    Kneip, C.2    Mäurer, A.P.3    Meyer, T.F.4
  • 24
    • 34547397847 scopus 로고    scopus 로고
    • Mechanisms of host cell exit by the intracellular bacterium Chlamydia
    • K. Hybiske, and R.S. Stephens Mechanisms of host cell exit by the intracellular bacterium Chlamydia Proc. Natl. Acad. Sci. USA 104 2007 11430 11435
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 11430-11435
    • Hybiske, K.1    Stephens, R.S.2
  • 25
    • 0026643236 scopus 로고
    • Structure and function of the uhp genes for the sugar phosphate transport system in Escherichia coli and Salmonella typhimurium
    • M.D. Island, B.Y. Wei, and R.J. Kadner Structure and function of the uhp genes for the sugar phosphate transport system in Escherichia coli and Salmonella typhimurium J. Bacteriol. 174 1992 2754 2762
    • (1992) J. Bacteriol. , vol.174 , pp. 2754-2762
    • Island, M.D.1    Wei, B.Y.2    Kadner, R.J.3
  • 26
    • 84896728925 scopus 로고    scopus 로고
    • Site-specific, insertional inactivation of incA in Chlamydia trachomatis using a group II intron
    • C.M. Johnson, and D.J. Fisher Site-specific, insertional inactivation of incA in Chlamydia trachomatis using a group II intron PLoS ONE 8 2013 e83989
    • (2013) PLoS ONE , vol.8 , pp. e83989
    • Johnson, C.M.1    Fisher, D.J.2
  • 28
    • 84877902070 scopus 로고    scopus 로고
    • Cell Biology of the Chlamydial Inclusion
    • M. Tan, ASM Press Washington, DC
    • M. Kokes, and R.H. Valdivia Cell Biology of the Chlamydial Inclusion M. Tan, Intracellular Pathogens I: Chlamydiales 2012 ASM Press Washington, DC 170 191
    • (2012) Intracellular Pathogens I: Chlamydiales , pp. 170-191
    • Kokes, M.1    Valdivia, R.H.2
  • 29
    • 48649108402 scopus 로고    scopus 로고
    • Actin and intermediate filaments stabilize the Chlamydia trachomatis vacuole by forming dynamic structural scaffolds
    • Y. Kumar, and R.H. Valdivia Actin and intermediate filaments stabilize the Chlamydia trachomatis vacuole by forming dynamic structural scaffolds Cell Host Microbe 4 2008 159 169
    • (2008) Cell Host Microbe , vol.4 , pp. 159-169
    • Kumar, Y.1    Valdivia, R.H.2
  • 30
    • 33747171783 scopus 로고    scopus 로고
    • The obligate intracellular pathogen Chlamydia trachomatis targets host lipid droplets
    • Y. Kumar, J. Cocchiaro, and R.H. Valdivia The obligate intracellular pathogen Chlamydia trachomatis targets host lipid droplets Curr. Biol. 16 2006 1646 1651
    • (2006) Curr. Biol. , vol.16 , pp. 1646-1651
    • Kumar, Y.1    Cocchiaro, J.2    Valdivia, R.H.3
  • 32
  • 33
    • 46249123800 scopus 로고    scopus 로고
    • Characterization of fifty putative inclusion membrane proteins encoded in the Chlamydia trachomatis genome
    • Z. Li, C. Chen, D. Chen, Y. Wu, Y. Zhong, and G. Zhong Characterization of fifty putative inclusion membrane proteins encoded in the Chlamydia trachomatis genome Infect. Immun. 76 2008 2746 2757
    • (2008) Infect. Immun. , vol.76 , pp. 2746-2757
    • Li, Z.1    Chen, C.2    Chen, D.3    Wu, Y.4    Zhong, Y.5    Zhong, G.6
  • 34
    • 0031863688 scopus 로고    scopus 로고
    • Building a secretory apparatus: Role of ARF1/COPI in Golgi biogenesis and maintenance
    • J. Lippincott-Schwartz, N.B. Cole, and J.G. Donaldson Building a secretory apparatus: role of ARF1/COPI in Golgi biogenesis and maintenance Histochem. Cell Biol. 109 1998 449 462
    • (1998) Histochem. Cell Biol. , vol.109 , pp. 449-462
    • Lippincott-Schwartz, J.1    Cole, N.B.2    Donaldson, J.G.3
  • 36
    • 0031657890 scopus 로고    scopus 로고
    • Plaque formation by and plaque cloning of Chlamydia trachomatis biovar trachoma
    • A. Matsumoto, H. Izutsu, N. Miyashita, and M. Ohuchi Plaque formation by and plaque cloning of Chlamydia trachomatis biovar trachoma J. Clin. Microbiol. 36 1998 3013 3019
    • (1998) J. Clin. Microbiol. , vol.36 , pp. 3013-3019
    • Matsumoto, A.1    Izutsu, H.2    Miyashita, N.3    Ohuchi, M.4
  • 37
    • 0001880096 scopus 로고    scopus 로고
    • Chlamydia metabolism as inferred from the complete genome sequence
    • R.S. Stephens, American Society for Microbiology Press Washington, DC
    • G. McClarty Chlamydia metabolism as inferred from the complete genome sequence R.S. Stephens, Chlamydia: Intracellular Biology, Pathogenesis, and Immunity 1999 American Society for Microbiology Press Washington, DC 69 100
    • (1999) Chlamydia: Intracellular Biology, Pathogenesis, and Immunity , pp. 69-100
    • McClarty, G.1
  • 38
    • 77951231154 scopus 로고    scopus 로고
    • Multiple host proteins that function in phosphatidylinositol-4-phosphate metabolism are recruited to the chlamydial inclusion
    • A.M. Moorhead, J.Y. Jung, A. Smirnov, S. Kaufer, and M.A. Scidmore Multiple host proteins that function in phosphatidylinositol-4-phosphate metabolism are recruited to the chlamydial inclusion Infect. Immun. 78 2010 1990 2007
    • (2010) Infect. Immun. , vol.78 , pp. 1990-2007
    • Moorhead, A.M.1    Jung, J.Y.2    Smirnov, A.3    Kaufer, S.4    Scidmore, M.A.5
  • 40
    • 58149488988 scopus 로고    scopus 로고
    • The 14-3-3 proteins: Integrators of diverse signaling cues that impact cell fate and cancer development
    • D.K. Morrison The 14-3-3 proteins: integrators of diverse signaling cues that impact cell fate and cancer development Trends Cell Biol. 19 2009 16 23
    • (2009) Trends Cell Biol. , vol.19 , pp. 16-23
    • Morrison, D.K.1
  • 41
    • 41149162021 scopus 로고    scopus 로고
    • Regulation of actin cytoskeleton dynamics by Arf-family GTPases
    • K.R. Myers, and J.E. Casanova Regulation of actin cytoskeleton dynamics by Arf-family GTPases Trends Cell Biol. 18 2008 184 192
    • (2008) Trends Cell Biol. , vol.18 , pp. 184-192
    • Myers, K.R.1    Casanova, J.E.2
  • 42
    • 84856372043 scopus 로고    scopus 로고
    • Virulence determinants in the obligate intracellular pathogen Chlamydia trachomatis revealed by forward genetic approaches
    • B.D. Nguyen, and R.H. Valdivia Virulence determinants in the obligate intracellular pathogen Chlamydia trachomatis revealed by forward genetic approaches Proc. Natl. Acad. Sci. USA 109 2012 1263 1268
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. 1263-1268
    • Nguyen, B.D.1    Valdivia, R.H.2
  • 43
    • 77955637905 scopus 로고    scopus 로고
    • Histone methylation by NUE, a novel nuclear effector of the intracellular pathogen Chlamydia trachomatis
    • M.E. Pennini, S. Perrinet, A. Dautry-Varsat, and A. Subtil Histone methylation by NUE, a novel nuclear effector of the intracellular pathogen Chlamydia trachomatis PLoS Pathog. 6 2010 e1000995
    • (2010) PLoS Pathog. , vol.6 , pp. e1000995
    • Pennini, M.E.1    Perrinet, S.2    Dautry-Varsat, A.3    Subtil, A.4
  • 46
    • 0242442569 scopus 로고    scopus 로고
    • DNA mismatch repair: Molecular mechanisms and biological function
    • M.J. Schofield, and P. Hsieh DNA mismatch repair: molecular mechanisms and biological function Annu. Rev. Microbiol. 57 2003 579 608
    • (2003) Annu. Rev. Microbiol. , vol.57 , pp. 579-608
    • Schofield, M.J.1    Hsieh, P.2
  • 47
    • 0035065113 scopus 로고    scopus 로고
    • Mammalian 14-3-3β associates with the Chlamydia trachomatis inclusion membrane via its interaction with IncG
    • M.A. Scidmore, and T. Hackstadt Mammalian 14-3-3β associates with the Chlamydia trachomatis inclusion membrane via its interaction with IncG Mol. Microbiol. 39 2001 1638 1650
    • (2001) Mol. Microbiol. , vol.39 , pp. 1638-1650
    • Scidmore, M.A.1    Hackstadt, T.2
  • 48
    • 0028095381 scopus 로고
    • Mechanisms of transcription-repair coupling and mutation frequency decline
    • C.P. Selby, and A. Sancar Mechanisms of transcription-repair coupling and mutation frequency decline Microbiol. Rev. 58 1994 317 329
    • (1994) Microbiol. Rev. , vol.58 , pp. 317-329
    • Selby, C.P.1    Sancar, A.2
  • 51
    • 0036363646 scopus 로고    scopus 로고
    • Mechanisms of transcription-coupled DNA repair
    • J.Q. Svejstrup Mechanisms of transcription-coupled DNA repair Nat. Rev. Mol. Cell Biol. 3 2002 21 29
    • (2002) Nat. Rev. Mol. Cell Biol. , vol.3 , pp. 21-29
    • Svejstrup, J.Q.1
  • 54
    • 80053440375 scopus 로고    scopus 로고
    • Development of a transformation system for Chlamydia trachomatis: Restoration of glycogen biosynthesis by acquisition of a plasmid shuttle vector
    • Y. Wang, S. Kahane, L.T. Cutcliffe, R.J. Skilton, P.R. Lambden, and I.N. Clarke Development of a transformation system for Chlamydia trachomatis: restoration of glycogen biosynthesis by acquisition of a plasmid shuttle vector PLoS Pathog. 7 2011 e1002258
    • (2011) PLoS Pathog. , vol.7 , pp. e1002258
    • Wang, Y.1    Kahane, S.2    Cutcliffe, L.T.3    Skilton, R.J.4    Lambden, P.R.5    Clarke, I.N.6
  • 55
    • 0028917799 scopus 로고
    • The 2-oxoglutarate/malate translocator of chloroplast envelope membranes: Molecular cloning of a transporter containing a 12-helix motif and expression of the functional protein in yeast cells
    • A. Weber, E. Menzlaff, B. Arbinger, M. Gutensohn, C. Eckerskorn, and U.I. Flügge The 2-oxoglutarate/malate translocator of chloroplast envelope membranes: molecular cloning of a transporter containing a 12-helix motif and expression of the functional protein in yeast cells Biochemistry 34 1995 2621 2627
    • (1995) Biochemistry , vol.34 , pp. 2621-2627
    • Weber, A.1    Menzlaff, E.2    Arbinger, B.3    Gutensohn, M.4    Eckerskorn, C.5    Flügge, U.I.6
  • 56
    • 80455129691 scopus 로고    scopus 로고
    • SNVer: A statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data
    • Z. Wei, W. Wang, P. Hu, G.J. Lyon, and H. Hakonarson SNVer: a statistical tool for variant calling in analysis of pooled or individual next-generation sequencing data Nucleic Acids Res. 39 2011 e132
    • (2011) Nucleic Acids Res. , vol.39 , pp. e132
    • Wei, Z.1    Wang, W.2    Hu, P.3    Lyon, G.J.4    Hakonarson, H.5
  • 57
    • 0014045052 scopus 로고
    • Transaminase activity and other enzymatic reactions involving pyruvate and glutamate in Chlamydia (psittacosis-trachoma group)
    • E. Weiss Transaminase activity and other enzymatic reactions involving pyruvate and glutamate in Chlamydia (psittacosis-trachoma group) J. Bacteriol. 93 1967 177 184
    • (1967) J. Bacteriol. , vol.93 , pp. 177-184
    • Weiss, E.1
  • 58
    • 0023262777 scopus 로고
    • Differential antimicrobial activity of human mononuclear phagocytes against the human biovars of Chlamydia trachomatis
    • E.C. Yong, E.Y. Chi, and C.C. Kuo Differential antimicrobial activity of human mononuclear phagocytes against the human biovars of Chlamydia trachomatis J. Immunol. 139 1987 1297 1302
    • (1987) J. Immunol. , vol.139 , pp. 1297-1302
    • Yong, E.C.1    Chi, E.Y.2    Kuo, C.C.3
  • 59
    • 70349335639 scopus 로고    scopus 로고
    • Killing me softly: Chlamydial use of proteolysis for evading host defenses
    • G. Zhong Killing me softly: chlamydial use of proteolysis for evading host defenses Trends Microbiol. 17 2009 467 474
    • (2009) Trends Microbiol. , vol.17 , pp. 467-474
    • Zhong, G.1
  • 60
    • 83455252729 scopus 로고    scopus 로고
    • Chlamydia trachomatis secretion of proteases for manipulating host signaling pathways
    • G. Zhong Chlamydia trachomatis secretion of proteases for manipulating host signaling pathways Front Microbiol 2 2011 14
    • (2011) Front Microbiol , vol.2 , pp. 14
    • Zhong, G.1


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