-
1
-
-
84863608994
-
Molecular signatures of human induced pluripotent stem cells highlight sex differences and cancer genes
-
M.C. Anguera, R. Sadreyev, Z. Zhang, A. Szanto, B. Payer, S.D. Sheridan, S. Kwok, S.J. Haggarty, M. Sur, and J. Alvarez Molecular signatures of human induced pluripotent stem cells highlight sex differences and cancer genes Cell Stem Cell 11 2012 75 90
-
(2012)
Cell Stem Cell
, vol.11
, pp. 75-90
-
-
Anguera, M.C.1
Sadreyev, R.2
Zhang, Z.3
Szanto, A.4
Payer, B.5
Sheridan, S.D.6
Kwok, S.7
Haggarty, S.J.8
Sur, M.9
Alvarez, J.10
-
2
-
-
57149083688
-
Epigenome and chromatin structure in human embryonic stem cells undergoing differentiation
-
E. Bártová, G. Galiová, J. Krejcí, A. Harnicarová, L. Strasák, and S. Kozubek Epigenome and chromatin structure in human embryonic stem cells undergoing differentiation Dev. Dyn. 237 2008 3690 3702
-
(2008)
Dev. Dyn.
, vol.237
, pp. 3690-3702
-
-
Bártová, E.1
Galiová, G.2
Krejcí, J.3
Harnicarová, A.4
Strasák, L.5
Kozubek, S.6
-
3
-
-
0036337759
-
Differentially methylated forms of histone H3 show unique association patterns with inactive human X chromosomes
-
B.A. Boggs, P. Cheung, E. Heard, D.L. Spector, A.C. Chinault, and C.D. Allis Differentially methylated forms of histone H3 show unique association patterns with inactive human X chromosomes Nat. Genet. 30 2002 73 76
-
(2002)
Nat. Genet.
, vol.30
, pp. 73-76
-
-
Boggs, B.A.1
Cheung, P.2
Heard, E.3
Spector, D.L.4
Chinault, A.C.5
Allis, C.D.6
-
4
-
-
0028212159
-
The human X-inactivation centre is not required for maintenance of X-chromosome inactivation
-
C.J. Brown, and H.F. Willard The human X-inactivation centre is not required for maintenance of X-chromosome inactivation Nature 368 1994 154 156
-
(1994)
Nature
, vol.368
, pp. 154-156
-
-
Brown, C.J.1
Willard, H.F.2
-
5
-
-
65549107163
-
Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver
-
A.L. Brunner, D.S. Johnson, S.W. Kim, A. Valouev, T.E. Reddy, N.F. Neff, E. Anton, C. Medina, L. Nguyen, and E. Chiao Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver Genome Res. 19 2009 1044 1056
-
(2009)
Genome Res.
, vol.19
, pp. 1044-1056
-
-
Brunner, A.L.1
Johnson, D.S.2
Kim, S.W.3
Valouev, A.4
Reddy, T.E.5
Neff, N.F.6
Anton, E.7
Medina, C.8
Nguyen, L.9
Chiao, E.10
-
6
-
-
15244353967
-
X-inactivation profile reveals extensive variability in X-linked gene expression in females
-
L. Carrel, and H.F. Willard X-inactivation profile reveals extensive variability in X-linked gene expression in females Nature 434 2005 400 404
-
(2005)
Nature
, vol.434
, pp. 400-404
-
-
Carrel, L.1
Willard, H.F.2
-
7
-
-
10644221120
-
Multiple spatially distinct types of facultative heterochromatin on the human inactive X chromosome
-
B.P. Chadwick, and H.F. Willard Multiple spatially distinct types of facultative heterochromatin on the human inactive X chromosome Proc. Natl. Acad. Sci. USA 101 2004 17450 17455
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 17450-17455
-
-
Chadwick, B.P.1
Willard, H.F.2
-
8
-
-
0032805149
-
Conditional deletion of Xist disrupts histone macroH2A localization but not maintenance of X inactivation
-
G. Csankovszki, B. Panning, B. Bates, J.R. Pehrson, and R. Jaenisch Conditional deletion of Xist disrupts histone macroH2A localization but not maintenance of X inactivation Nat. Genet. 22 1999 323 324
-
(1999)
Nat. Genet.
, vol.22
, pp. 323-324
-
-
Csankovszki, G.1
Panning, B.2
Bates, B.3
Pehrson, J.R.4
Jaenisch, R.5
-
9
-
-
82255192364
-
Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster
-
X. Deng, J.B. Hiatt, D.K. Nguyen, S. Ercan, D. Sturgill, L.W. Hillier, F. Schlesinger, C.A. Davis, V.J. Reinke, and T.R. Gingeras Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster Nat. Genet. 43 2011 1179 1185
-
(2011)
Nat. Genet.
, vol.43
, pp. 1179-1185
-
-
Deng, X.1
Hiatt, J.B.2
Nguyen, D.K.3
Ercan, S.4
Sturgill, D.5
Hillier, L.W.6
Schlesinger, F.7
Davis, C.A.8
Reinke, V.J.9
Gingeras, T.R.10
-
11
-
-
84890439421
-
Derivation of novel human ground state naive pluripotent stem cells
-
O. Gafni, L. Weinberger, A.A. Mansour, Y.S. Manor, E. Chomsky, D. Ben-Yosef, Y. Kalma, S. Viukov, I. Maza, and A. Zviran Derivation of novel human ground state naive pluripotent stem cells Nature 504 2013 282 286
-
(2013)
Nature
, vol.504
, pp. 282-286
-
-
Gafni, O.1
Weinberger, L.2
Mansour, A.A.3
Manor, Y.S.4
Chomsky, E.5
Ben-Yosef, D.6
Kalma, Y.7
Viukov, S.8
Maza, I.9
Zviran, A.10
-
12
-
-
80053217109
-
Human mesenchymal stem cells derived from induced pluripotent stem cells down-regulate NK-cell cytolytic machinery
-
M. Giuliani, N. Oudrhiri, Z.M. Noman, A. Vernochet, S. Chouaib, B. Azzarone, A. Durrbach, and A. Bennaceur-Griscelli Human mesenchymal stem cells derived from induced pluripotent stem cells down-regulate NK-cell cytolytic machinery Blood 118 2011 3254 3262
-
(2011)
Blood
, vol.118
, pp. 3254-3262
-
-
Giuliani, M.1
Oudrhiri, N.2
Noman, Z.M.3
Vernochet, A.4
Chouaib, S.5
Azzarone, B.6
Durrbach, A.7
Bennaceur-Griscelli, A.8
-
13
-
-
77956260872
-
Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells
-
M.G. Guenther, G.M. Frampton, F. Soldner, D. Hockemeyer, M. Mitalipova, R. Jaenisch, and R.A. Young Chromatin structure and gene expression programs of human embryonic and induced pluripotent stem cells Cell Stem Cell 7 2010 249 257
-
(2010)
Cell Stem Cell
, vol.7
, pp. 249-257
-
-
Guenther, M.G.1
Frampton, G.M.2
Soldner, F.3
Hockemeyer, D.4
Mitalipova, M.5
Jaenisch, R.6
Young, R.A.7
-
14
-
-
44449159596
-
X-inactivation reveals epigenetic anomalies in most hESC but identifies sublines that initiate as expected
-
L.L. Hall, M. Byron, J. Butler, K.A. Becker, A. Nelson, M. Amit, J. Itskovitz-Eldor, J. Stein, G. Stein, C. Ware, and J.B. Lawrence X-inactivation reveals epigenetic anomalies in most hESC but identifies sublines that initiate as expected J. Cell. Physiol. 216 2008 445 452
-
(2008)
J. Cell. Physiol.
, vol.216
, pp. 445-452
-
-
Hall, L.L.1
Byron, M.2
Butler, J.3
Becker, K.A.4
Nelson, A.5
Amit, M.6
Itskovitz-Eldor, J.7
Stein, J.8
Stein, G.9
Ware, C.10
Lawrence, J.B.11
-
15
-
-
77953809032
-
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells
-
R.D. Hawkins, G.C. Hon, L.K. Lee, Q. Ngo, R. Lister, M. Pelizzola, L.E. Edsall, S. Kuan, Y. Luu, and S. Klugman Distinct epigenomic landscapes of pluripotent and lineage-committed human cells Cell Stem Cell 6 2010 479 491
-
(2010)
Cell Stem Cell
, vol.6
, pp. 479-491
-
-
Hawkins, R.D.1
Hon, G.C.2
Lee, L.K.3
Ngo, Q.4
Lister, R.5
Pelizzola, M.6
Edsall, L.E.7
Kuan, S.8
Luu, Y.9
Klugman, S.10
-
16
-
-
0035861875
-
Methylation of histone H3 at Lys-9 is an early mark on the X chromosome during X inactivation
-
E. Heard, C. Rougeulle, D. Arnaud, P. Avner, C.D. Allis, and D.L. Spector Methylation of histone H3 at Lys-9 is an early mark on the X chromosome during X inactivation Cell 107 2001 727 738
-
(2001)
Cell
, vol.107
, pp. 727-738
-
-
Heard, E.1
Rougeulle, C.2
Arnaud, D.3
Avner, P.4
Allis, C.D.5
Spector, D.L.6
-
17
-
-
77952732489
-
Derivation of pre-X inactivation human embryonic stem cells under physiological oxygen concentrations
-
C.J. Lengner, A.A. Gimelbrant, J.A. Erwin, A.W. Cheng, M.G. Guenther, G.G. Welstead, R. Alagappan, G.M. Frampton, P. Xu, and J. Muffat Derivation of pre-X inactivation human embryonic stem cells under physiological oxygen concentrations Cell 141 2010 872 883
-
(2010)
Cell
, vol.141
, pp. 872-883
-
-
Lengner, C.J.1
Gimelbrant, A.A.2
Erwin, J.A.3
Cheng, A.W.4
Guenther, M.G.5
Welstead, G.G.6
Alagappan, R.7
Frampton, G.M.8
Xu, P.9
Muffat, J.10
-
18
-
-
84860640679
-
Erosion of dosage compensation impacts human iPSC disease modeling
-
S. Mekhoubad, C. Bock, A.S. de Boer, E. Kiskinis, A. Meissner, and K. Eggan Erosion of dosage compensation impacts human iPSC disease modeling Cell Stem Cell 10 2012 595 609
-
(2012)
Cell Stem Cell
, vol.10
, pp. 595-609
-
-
Mekhoubad, S.1
Bock, C.2
De Boer, A.S.3
Kiskinis, E.4
Meissner, A.5
Eggan, K.6
-
19
-
-
79951471078
-
Partial reversal of the methylation pattern of the X-linked gene HUMARA during hematopoietic differentiation of human embryonic stem cells
-
M.T. Mitjavila-Garcia, M.L. Bonnet, F. Yates, R. Haddad, N. Oudrhiri, O. Féraud, A. Magniez, M. Makhlouf, C. Vallot, and C. Rougeulle Partial reversal of the methylation pattern of the X-linked gene HUMARA during hematopoietic differentiation of human embryonic stem cells J. Mol. Cell Biol. 2 2010 291 298
-
(2010)
J. Mol. Cell Biol.
, vol.2
, pp. 291-298
-
-
Mitjavila-Garcia, M.T.1
Bonnet, M.L.2
Yates, F.3
Haddad, R.4
Oudrhiri, N.5
Féraud, O.6
Magniez, A.7
Makhlouf, M.8
Vallot, C.9
Rougeulle, C.10
-
20
-
-
78549258489
-
Molecular coupling of Tsix regulation and pluripotency
-
P. Navarro, A. Oldfield, J. Legoupi, N. Festuccia, A. Dubois, M. Attia, J. Schoorlemmer, C. Rougeulle, I. Chambers, and P. Avner Molecular coupling of Tsix regulation and pluripotency Nature 468 2010 457 460
-
(2010)
Nature
, vol.468
, pp. 457-460
-
-
Navarro, P.1
Oldfield, A.2
Legoupi, J.3
Festuccia, N.4
Dubois, A.5
Attia, M.6
Schoorlemmer, J.7
Rougeulle, C.8
Chambers, I.9
Avner, P.10
-
21
-
-
84860643156
-
Recurrent variations in DNA methylation in human pluripotent stem cells and their differentiated derivatives
-
K.L. Nazor, G. Altun, C. Lynch, H. Tran, J.V. Harness, I. Slavin, I. Garitaonandia, F.J. Müller, Y.C. Wang, and F.S. Boscolo Recurrent variations in DNA methylation in human pluripotent stem cells and their differentiated derivatives Cell Stem Cell 10 2012 620 634
-
(2012)
Cell Stem Cell
, vol.10
, pp. 620-634
-
-
Nazor, K.L.1
Altun, G.2
Lynch, C.3
Tran, H.4
Harness, J.V.5
Slavin, I.6
Garitaonandia, I.7
Müller, F.J.8
Wang, Y.C.9
Boscolo, F.S.10
-
22
-
-
85027940507
-
Human inactive X chromosome is compacted through a PRC2-independent SMCHD1-HBiX1 pathway
-
R.S. Nozawa, K. Nagao, K.T. Igami, S. Shibata, N. Shirai, N. Nozaki, T. Sado, H. Kimura, and C. Obuse Human inactive X chromosome is compacted through a PRC2-independent SMCHD1-HBiX1 pathway Nat. Struct. Mol. Biol. 20 2013 566 573
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 566-573
-
-
Nozawa, R.S.1
Nagao, K.2
Igami, K.T.3
Shibata, S.4
Shirai, N.5
Nozaki, N.6
Sado, T.7
Kimura, H.8
Obuse, C.9
-
23
-
-
79955482843
-
Eutherian mammals use diverse strategies to initiate X-chromosome inactivation during development
-
I. Okamoto, C. Patrat, D. Thépot, N. Peynot, P. Fauque, N. Daniel, P. Diabangouaya, J.P. Wolf, J.P. Renard, V. Duranthon, and E. Heard Eutherian mammals use diverse strategies to initiate X-chromosome inactivation during development Nature 472 2011 370 374
-
(2011)
Nature
, vol.472
, pp. 370-374
-
-
Okamoto, I.1
Patrat, C.2
Thépot, D.3
Peynot, N.4
Fauque, P.5
Daniel, N.6
Diabangouaya, P.7
Wolf, J.P.8
Renard, J.P.9
Duranthon, V.10
Heard, E.11
-
24
-
-
79961028059
-
Xist regulation and function explored
-
D.B. Pontier, and J. Gribnau Xist regulation and function explored Hum. Genet. 130 2011 223 236
-
(2011)
Hum. Genet.
, vol.130
, pp. 223-236
-
-
Pontier, D.B.1
Gribnau, J.2
-
25
-
-
32044453343
-
X chromosomal abnormalities in basal-like human breast cancer
-
A.L. Richardson, Z.C. Wang, A. De Nicolo, X. Lu, M. Brown, A. Miron, X. Liao, J.D. Iglehart, D.M. Livingston, and S. Ganesan X chromosomal abnormalities in basal-like human breast cancer Cancer Cell 9 2006 121 132
-
(2006)
Cancer Cell
, vol.9
, pp. 121-132
-
-
Richardson, A.L.1
Wang, Z.C.2
De Nicolo, A.3
Lu, X.4
Brown, M.5
Miron, A.6
Liao, X.7
Iglehart, J.D.8
Livingston, D.M.9
Ganesan, S.10
-
26
-
-
42449163490
-
X-inactivation in female human embryonic stem cells is in a nonrandom pattern and prone to epigenetic alterations
-
Y. Shen, Y. Matsuno, S.D. Fouse, N. Rao, S. Root, R. Xu, M. Pellegrini, A.D. Riggs, and G. Fan X-inactivation in female human embryonic stem cells is in a nonrandom pattern and prone to epigenetic alterations Proc. Natl. Acad. Sci. USA 105 2008 4709 4714
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 4709-4714
-
-
Shen, Y.1
Matsuno, Y.2
Fouse, S.D.3
Rao, N.4
Root, S.5
Xu, R.6
Pellegrini, M.7
Riggs, A.D.8
Fan, G.9
-
27
-
-
84907207898
-
Dynamic and static maintenance of epigenetic memory in pluripotent and somatic cells
-
Z. Shipony, Z. Mukamel, N.M. Cohen, G. Landan, E. Chomsky, S.R. Zeliger, Y.C. Fried, E. Ainbinder, N. Friedman, and A. Tanay Dynamic and static maintenance of epigenetic memory in pluripotent and somatic cells Nature 513 2014 115 119
-
(2014)
Nature
, vol.513
, pp. 115-119
-
-
Shipony, Z.1
Mukamel, Z.2
Cohen, N.M.3
Landan, G.4
Chomsky, E.5
Zeliger, S.R.6
Fried, Y.C.7
Ainbinder, E.8
Friedman, N.9
Tanay, A.10
-
28
-
-
42449134974
-
X-chromosome inactivation and epigenetic fluidity in human embryonic stem cells
-
S.S. Silva, R.K. Rowntree, S. Mekhoubad, and J.T. Lee X-chromosome inactivation and epigenetic fluidity in human embryonic stem cells Proc. Natl. Acad. Sci. USA 105 2008 4820 4825
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 4820-4825
-
-
Silva, S.S.1
Rowntree, R.K.2
Mekhoubad, S.3
Lee, J.T.4
-
30
-
-
84892734390
-
Pluripotent stem cells in regenerative medicine: Challenges and recent progress
-
V. Tabar, and L. Studer Pluripotent stem cells in regenerative medicine: challenges and recent progress Nat. Rev. Genet. 15 2014 82 92
-
(2014)
Nat. Rev. Genet.
, vol.15
, pp. 82-92
-
-
Tabar, V.1
Studer, L.2
-
31
-
-
84878281982
-
Induced pluripotent stem cells in medicine and biology
-
K. Takahashi, and S. Yamanaka Induced pluripotent stem cells in medicine and biology Development 140 2013 2457 2461
-
(2013)
Development
, vol.140
, pp. 2457-2461
-
-
Takahashi, K.1
Yamanaka, S.2
-
33
-
-
84874651771
-
XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells
-
C. Vallot, C. Huret, Y. Lesecque, A. Resch, N. Oudrhiri, A. Bennaceur-Griscelli, L. Duret, and C. Rougeulle XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells Nat. Genet. 45 2013 239 241
-
(2013)
Nat. Genet.
, vol.45
, pp. 239-241
-
-
Vallot, C.1
Huret, C.2
Lesecque, Y.3
Resch, A.4
Oudrhiri, N.5
Bennaceur-Griscelli, A.6
Duret, L.7
Rougeulle, C.8
-
34
-
-
34347237644
-
X inactive-specific transcript RNA coating and genetic instability of the X chromosome in BRCA1 breast tumors
-
A. Vincent-Salomon, C. Ganem-Elbaz, E. Manié, V. Raynal, X. Sastre-Garau, D. Stoppa-Lyonnet, M.H. Stern, and E. Heard X inactive-specific transcript RNA coating and genetic instability of the X chromosome in BRCA1 breast tumors Cancer Res. 67 2007 5134 5140
-
(2007)
Cancer Res.
, vol.67
, pp. 5134-5140
-
-
Vincent-Salomon, A.1
Ganem-Elbaz, C.2
Manié, E.3
Raynal, V.4
Sastre-Garau, X.5
Stoppa-Lyonnet, D.6
Stern, M.H.7
Heard, E.8
-
35
-
-
33845295138
-
Human heterochromatin proteins form large domains containing KRAB-ZNF genes
-
M.J. Vogel, L. Guelen, E. de Wit, D. Peric-Hupkes, M. Lodén, W. Talhout, M. Feenstra, B. Abbas, A.K. Classen, and B. van Steensel Human heterochromatin proteins form large domains containing KRAB-ZNF genes Genome Res. 16 2006 1493 1504
-
(2006)
Genome Res.
, vol.16
, pp. 1493-1504
-
-
Vogel, M.J.1
Guelen, L.2
De Wit, E.3
Peric-Hupkes, D.4
Lodén, M.5
Talhout, W.6
Feenstra, M.7
Abbas, B.8
Classen, A.K.9
Van Steensel, B.10
-
36
-
-
79960484375
-
Gene silencing in X-chromosome inactivation: Advances in understanding facultative heterochromatin formation
-
A. Wutz Gene silencing in X-chromosome inactivation: advances in understanding facultative heterochromatin formation Nat. Rev. Genet. 12 2011 542 553
-
(2011)
Nat. Rev. Genet.
, vol.12
, pp. 542-553
-
-
Wutz, A.1
-
37
-
-
0033637110
-
A shift from reversible to irreversible X inactivation is triggered during ES cell differentiation
-
A. Wutz, and R. Jaenisch A shift from reversible to irreversible X inactivation is triggered during ES cell differentiation Mol. Cell 5 2000 695 705
-
(2000)
Mol. Cell
, vol.5
, pp. 695-705
-
-
Wutz, A.1
Jaenisch, R.2
-
38
-
-
84873135269
-
Human pluripotent stem cells: An emerging model in developmental biology
-
Z. Zhu, and D. Huangfu Human pluripotent stem cells: an emerging model in developmental biology Development 140 2013 705 717
-
(2013)
Development
, vol.140
, pp. 705-717
-
-
Zhu, Z.1
Huangfu, D.2
|