Enhanced glycosyl hydrolase production in Aspergillus nidulans using transcription factor engineering approaches

Biotechnology for Biofuels

Volumn 7, Issue 1, 2014, Pages

  Tamayo Ramos, Juan Antonio ^a,b   Orejas, Margarita ^a  

^a INSTITUTO DE AGROQUÍMICA Y TECNOLOGÍA DE ALIMENTOS CSIC   (Spain)

^b WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

L rhamnosidase; Ambient pH regulation; Aspergillus nidulans; Endo 1,4 Xylanase; Fungal cell factories; PalA PacC; Plant cell wall degrading enzymes; Protein production; Xylan xylose regulator (XlnR)

Indexed keywords

ASPERGILLUS; BIOTECHNOLOGY; DNA SEQUENCES; TRANSCRIPTION FACTORS;

-L-RHAMNOSIDASE; ASPERGILLUS NIDULANS; EXPRESSION SYSTEM; FUNGAL CELLS; PALA/PACC; PH REGULATION; PLANT CELL WALL; PROTEIN PRODUCTION; XYLAN/XYLOSE REGULATOR (XLNR); XYLANASES;

HYDROLASES;

BIOENGINEERING; BIOTECHNOLOGY; ENZYME ACTIVITY; FUNGUS; GLUCOSE; PH; PROTEIN; SUGAR;

EMERICELLA NIDULANS; FUNGI;

EID: 84929211319     PISSN: 17546834     EISSN: None     Source Type: Journal    
DOI: 10.1186/1754-6834-7-103     Document Type: Article

References (47)

1. Cellulosic biofuels. Carroll A, Somerville C, Annu Rev Plant Biol 2009 60 165 182
2. Plant cell wall polymers as precursors for biofuels. Pauly M, Keegstra K, Curr Opin Plant Biol 2010 13 305 312
3. Progress and challenges in enzyme development for biomass utilization. Merino ST, Cherry J, Adv Biochem Eng Biotechnol 2007 108 95 120 (Pubitemid 47434544)
4. Biomass converting enzymes as industrial biocatalysts for fuels and chemicals: recent developments. Sweeney MD, Xu F, Catalysts 2012 2 244 263
5. Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EG, Grigoriev IV, Harris P, Jackson M, Kubicek CP, Han CS, Ho I, Larrondo LF, de Leon AL, Magnuson JK, Merino S, Misra M, Nelson B, Putnam N, Robbertse B, Salamov AA, Schmoll M, Terry A, Thayer N, Westerholm-Parvinen A, et al. Nat Biotechnol 2008 26 553 560 (Pubitemid 351668043)
6. Arsenal of plant cell wall degrading enzymes reflects host preference among plant pathogenic fungi. King BC, Waxman KD, Nenni NV, Walker LP, Bergstrom GC, Gibson DM, Biotechnol Biofuels 2011 4 4
7. Mapping the polysaccharide degradation potential of Aspergillus niger. Andersen MR, Giese M, de Vries RP, Nielsen J, BMC Genomics 2012 13 313
8. Post-genomic analyes of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis. Couturier M, Navarro D, Olivé C, Chevret D, Favel A, Lesage-Meessen L, Henrissat B, Coutinho PM, Berrin JG, BMC Genomics 2012 13 57
9. A time course analysis of the extracellular proteome of Aspergillus nidulans growing on sorghum stover. Saykhedkar S, Ray A, Ayoubi-Canaan P, Hartson SD, Prade R, Mort AJ, Biotechnol Biofuels 2012 5 52
10. Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi. Zhao Z, Liu H, Wang C, Xu JR, BMC Genomics 2013 14 274
11. Using a model filamentous fungus to unravel mechanisms of lignocellulose deconstruction. Znameroski EA, Glass NL, Biotechnol Biofuels 2013 5 6
12. Filamentous fungi as cell factories for heterologous protein production. Punt PJ, van Biezen N, Conesa A, Albers A, Mangnus J, van den Hondel C, Trends Biotechnol 2002 20 200 206 (Pubitemid 34270781)
13. Developing Aspergillus as a host for heterologous expression. Lubertozzi D, Keasling JD, Biotechnol Adv 2009 27 53 75
14. Aspergillus as a multi-purpose cell factory: current status and perspectives. Meyer V, Wu B, Ram AF, Biotechnol Lett 2011 33 469 476
15. Post-genomic insights into the plant polysaccharide degradation potential of Aspergillus nidulans and comparison to Aspergillus niger and Aspergillus oryzae. Coutinho PM, Andersen MR, Kolenova K, van Kuyk PA, Benoit I, Gruben BS, Trejo-Aguilar B, Visser H, van Solingen P, Pakula T, Seiboth B, Battaglia E, Aguilar-Osorio G, de Jong JF, Ohm RA, Aguilar M, Henrissat B, Nielsen J, Stålbrand H, de Vries RP, Fungal Genet Biol 2009 46 161 S169
16. Development of a suite of polysaccharide-degrading enzymes for analyzing plant cell walls. Bauer S, Vasu P, Persson S, Mort AJ, Somerville CR, Proc Natl Acad Sci U S A 2006 103 11417 11422 (Pubitemid 44156532)
17. Regulation of transcription of cellulases and hemicellulases-encoding genes in Aspergillus niger and Hypocrea jecorina (Trichoderma reesei). Stricker AR, Mach RL, de Graaff LH, Appl Microbiol Biotechnol 2008 78 211 220
18. CreA mediates repression of the regulatory gene xlnR which controls the production of xylanolytic enzymes in Aspergillus nidulans. Tamayo EN, Villanueva A, Hasper AA, de Graaff LH, Ramón D, Orejas M, Fungal Genet Biol 2008 45 984 993
19. Functional analysis of the Aspergillus nidulans kinome. de Souza CP, Hashmi SB, Osmani AH, Andrews P, Ringelberg CS, Dunlap JC, Osmani SA, PLoS ONE 2012 8 58008
20. Functional characterization of the non-essential protein kinases and phosphatases regulating Aspergillus nidulans hydrolytic enzyme production. Brown NA, de Gouvea FP, Krohn NG, Savoldo M, Goldman GH, Biotechnol Biofuel 2013 6 91
21. Production of toxic metabolites in Aspergillus niger, Aspergillus oryzae, and Trichoderma reesei: justification of mycotoxin testing in food grade enzyme preparations derived from the three fungi. Blumenthal CZ, Regul Toxicol Pharmacol 2004 39 214 228 (Pubitemid 38388202)
22. Fumosin and ochratoxin production in industrial Aspergillus niger strains. Frisvad C, Larsen TO, Thrane U, Meijer M, Varga J, Samson RA, Nielsen KF, PLoS ONE 2011 6 23496
23. An ethanol inducible gene switch for plants used to manipulate carbon metabolism. Caddick MX, Greenland AJ, Jepson I, Krause KP, Qu N, Riddell KV, Salter MG, Schuch W, Sonnewald U, Tomsett AB, Nat Biotechnol 1998 16 177 180 (Pubitemid 28078507)
24. Gas-inducible transgene expression in mammalian cells and mice. Weber W, Rimann M, Spielmann M, Keller B, Daoud-El Baba M, Aubel D, Weber CC, Fussenegger M, Nat Biotechnol 2004 22 1440 1444 (Pubitemid 39482865)
25. Opposite patterns of expression of two Aspergillus nidulans xylanase genes with respect to ambient pH. MacCabe AP, Orejas M, Pérez-González JA, Ramón D, J Bacteriol 1998 180 1331 1333 (Pubitemid 28119494)
26. Carbon catabolite repression of the Aspergillus nidulans xlnA gene. Orejas M, MacCabe AP, Pérez González JA, Kumar S, Ramón D, Mol Microbiol 1999 31 177 184 (Pubitemid 29012158)
27. The wide-domain carbon catabolite repressor CreA indirectly controls expression of the Aspergillus nidulans xlnB gene, encoding the acidic endo-beta-(1,4)-xylanase X(24). Orejas M, MacCabe AP, Pérez-González JA, Kumar S, Ramón D, J Bacteriol 2001 183 1517 1523 (Pubitemid 32172293)
28. Consecutive gene deletions in Aspergillus nidulans: application of the Cre/loxP system. Forment JV, Ramón D, MacCabe AP, Curr Genet 2006 50 217 224 (Pubitemid 44227701)
29. Xylanase production in Aspergillus nidulans. Induction and carbon catabolite repression. Piñaga F, Fernández-Espinar MT, Vallés S, Ramón D, FEMS Microbiol Lett 1994 115 319 323 (Pubitemid 124011509)
30. The effect of CreA in glucose and xylose catabolism in Aspergillus nidulans. Prathumpai W, McIntyre M, Nielsen J, Appl Microbiol Biotechnol 2004 63 748 753 (Pubitemid 38316704)
31. Alcoholic fermentation of carbon sources in biomass hydrolysates by Saccharomyces cerevisiae: current status. van Maris AJ, Abbott DA, Bellissimi E, van den Brink J, Kuyper M, Luttik MA, Wisselink HW, Scheffers WA, van Dijken JP, Pronk JT, Antonie Van Leeuwenhoek 2006 90 391 418 (Pubitemid 44688265)
32. L-Rhamnosidases: old and new insights. Manzanares P, Vallés S, Ramón D, Orejas M, Industrial enzymes, structure, function and applications Dordrecht: Springer, Polaina J, MacCabe AP, 2007 117 140
33. Microbial xylanases: engineering, production and industrial applications. Juturu V, Wu JC, Biotechnol Adv 2012 30 1219 1227
34. Regulation of intracellular and extracellular neutral and alkaline proteases in Aspergillus nidulans. Cohen BL, J Gen Microbiol 1973 79 311 320
35. Synthesis of xylanolytic enzymes and other carbohydrases by the fungus Penicillium canescens: transformants with an altered copy number of the gene xlnR and an encoding transcriptional activator. Serebrianyi VA, Sinitsyna OA, Fedorova EA, Okunev ON, Bekkarevich AO, Sokolova LM, Vinetskii Iu P, Sinitsyn AP, Appl Biochem Microbiol 2006 42 584 591 (Pubitemid 44663321)
36. Transcriptional regulation of xyr1, encoding the main regulator of the xylanolytic and cellulolytic enzyme system in Hypocrea jecorina. Mach-Aigner AR, Pucher ME, Steiger MG, Bauer GE, Preis SJ, Mach RL, Appl Environ Microbiol 2008 74 6554 6562
37. Construction of a genetically modified wine yeast strain expressing the Aspergillus aculeatus rhaA gene, encoding an alpha-L-rhamnosidase of enological interest. Manzanares P, Orejas M, Gil JV, de Graaff LH, Visser J, Ramón D, Appl Environ Microbiol 2003 69 7558 7562 (Pubitemid 38585418)
38. The filamentous fungus Aspergillus nidulans produces an alpha-L-rhamnosidase of potential oenological interest. Orejas M, Ibáñez E, Ramón D, Lett Appl Microbiol 1999 28 383 388 (Pubitemid 29229512)
39. Purification and characterization of an alpha-L-rhamnosidase from Aspergillus niger. Manzanares P, de Graaff LH, Visser J, FEMS Microbiol Lett 1997 157 279 283 (Pubitemid 28248212)
40. Rhamnogalacturonan alpha-L-rhamnopyranohydrolase. A novel enzyme specific for the terminal non reducing rhamnosyl unit in rhamnogalacturonan regions of pectin. Mutter M, Beldman G, Schols HA, Voragen AGJ, Plant Physiol 1994 106 241 250
41. The genetics of Aspergillus nidulans. Pontecorvo G, Roper JA, Hemmons LM, Macdonald KD, Bufton AWJ, Adv Genet 1953 5 141 238
42. Induction and repression of nitrate reductase in the fungus Aspergillus nidulans. Cove DJ, Biochim Biophys Acta 1966 113 51 56
43. Sambrook J, Russell DW, Molecular cloning: a laboratory manual Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press 2001
44. Transformation by integration in Aspergillus nidulans. Tilburn J, Scazzocchio C, Taylor GG, Zabicky-Zissman JH, Lockington RA, Davies RW, Gene 1983 26 205 221 (Pubitemid 14190474)
45. Molecular cloning and expression in Saccharomyces cerevisiae of two Aspergillus nidulans xylanase genes. Pérez-González JA, de Graaff LH, Visser J, Ramón D, Appl Environ Microbiol 1996 62 2179 2182 (Pubitemid 26169021)
46. Cloning an Aspergillus developmental gene by transformation. Johnstone IL, Hughes SG, Clutterbuck AJ, EMBO J 1985 4 1307 1311
47. Chromosomal location plays a role in regulation of aflatoxin gene expression in Aspergillus parasiticus. Chiou CH, Miller M, Wilson DL, Trail F, Linz JE, Appl Environ Microbiol 2002 68 306 315 (Pubitemid 34031193)