Phaeodactylum tricornutum photorespiration takes part in glycerol metabolism and is important for nitrogen-limited response

Biotechnology for Biofuels

Volumn 8, Issue 1, 2015, Pages

  Huang, Aiyou ^a   Liu, Lixia ^b   Yang, Chen ^b   Wang, Guangce ^a  

^a INSTITUTE OF OCEANOLOGY   (China)

^b INSTITUTE OF PLANT PHYSIOLOGY AND ECOLOGY   (China)

Author keywords

Glycerol metabolism; Nitrogen limited response; Phaeodactylum tricornutum; Photorespiration

Indexed keywords

ALGAE; AMINO ACIDS; ATOMS; CARBON; GLYCEROL; MICROORGANISMS; NITROGEN; ORGANIC CARBON; PHYSIOLOGY;

CARBON METABOLISM; DERIVED CARBONS; DIFFERENT MECHANISMS; DIHYDROXYACETONE PHOSPHATE; METABOLIC FLUX ANALYSIS; PHAEODACTYLUM TRICORNUTUM; PHOTORESPIRATION; POTENTIAL SOURCES;

METABOLISM;

AMINO ACID; DIATOM; GROWTH RATE; METABOLISM; MICROALGA; NITROGEN; RESPIRATION;

BACILLARIOPHYTA; PHAEODACTYLUM TRICORNUTUM;

EID: 84929165677     PISSN: 17546834     EISSN: None     Source Type: Journal    
DOI: 10.1186/s13068-015-0256-5     Document Type: Article

References (47)

1. Garci MCC, Sevilla JMF, Fernandez FGA, Grima EM, Camacho FG. Mixotrophic growth of Phaeodactylum tricornutum on glycerol: growth rate and fatty acid profile. J Appl Phycol. 2000;12:239-48.
2. Garcia MCC, Miron AS, Sevilla JMF, Grima EM, Camacho FG. Mixotrophic growth of the microalga Phaeodactylum tricornutum - influence of different nitrogen and organic carbon sources on productivity and biomass composition. Process Biochem. 2005;40:297-305.
3. Ceron Garcia MC, Camacho FG, Miron AS, Sevilla JMF, Chisti Y, Grima EM. Mixotrophic production of marine microalga Phaeodactylum tricornutum on various carbon sources. J Microbiol Biotechnol. 2006;16:689-94.
4. Kobayashi M, Kakizono T, Nagai S. Enhanced carotenoid biosynthesis by oxidative stress in acetate-induced cyst cells of a green unicellular alga, Haematococcus pluvialis. Appl Environ Microbiol. 1993;59:867-73.
5. Lee YK, Ding SY, Hoe CH, Low CS. Mixotrophic growth of Chlorella sorokiniana in outdoor enclosed photobioreactor. J Appl Phycol. 1996;8:163-9.
6. Field C, Behrenfeld M, Randerson J, Falkowski P. Primary production of the biosphere: integrating terrestrial and oceanic components. Sci. 1998;281:237-40.
7. Falkowski P, Barber R, Smetacek V. Biogeochemical controls and feedbacks on ocean primary production. Sci. 1998;281:200-6.
8. Demirbas A. Biodiesel: a realistic fuel alternative for diesel engines. London: Springer Verlag; 2008.
9. Francius G, Tesson B, Dague E, Martin-Jezequel V, Dufrene YF. Nanostructure and nanomechanics of live Phaeodactylum tricornutum morphotypes. Environ Microbiol. 2008;10:1344-56.
10. De Martino A, Meichenin A, Shi J, Pan KH, Bowler C. Genetic and phenotypic characterization of Phaeodactylum tricornutum (Bacillariophyceae) accessions. J Phycol. 2007;43:992-1009.
11. Borowitzka M, Volcani B. The polymorphic diatom Phaeodactylum tricornutum: ultrastructure of its morphotypes. J Phycol. 1978;14:10-21.
12. Gutenbrunner S, Thalhamer J, Schid A. Mm (1994) proteinaceaous and immunochemical distinctions between the oval and fusirom morphotypes of Phaeodactylum tricornutum (Bacillariophyceae). J Phycol. 1994;30:129-36.
13. Patil V, Reitan KI, Knutsen G, Mortensen LM, Källqvist T, Olsen E, et al. Microalgae as source of polyunsaturated fatty acids for aquaculture. Curr Top Plant Biol. 2005;6:57-65.
14. Owens TG, Wold ER. Light-harvesting function in the diatom Phaeodactylum tricornutum I. Isolation and characterization of pigment-protein complexes. Plant Physiol. 1986;80:732-8.
15. Kim JM, Araki S, Kim DJ, Park CB, Takasuka N, Baba-Toriyama H, et al. Chemopreventive effects of carotenoids and curcumins on mouse colon carcinogenesis after 1, 2-dimethylhydrazine initiation. Carcinogenesis. 1998;19:81-5.
16. Nomura T, Kikuchi M, Kubodera A, Kawakami Y. Proton-donative antioxidant activity of fucoxanthin with 1, 1-diphenyl-2-picrylhydrazyl (DPPH). IUBMB Life. 1997;42:361-70.
17. Maeda H, Hosokawa M, Sashima T, Funayama K, Miyashita K. Fucoxanthin from edible seaweed, Undaria pinnatifida, shows antiobesity effect through ucp1 expression in white adipose tissues. BBRC. 2005;332:392-7.
18. Matsumoto M, Hosokawa M, Matsukawa N, Hagio M, Shinoki A, Nishimukai M, et al. Suppressive effects of the marine carotenoids, fucoxanthin and fucoxanthinol on triglyceride absorption in lymph duct-cannulated rats. Eur J Nutr. 2010;49:243-9.
19. Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, et al. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 2008;456:239-44.
20. Apt KE, Grossman A, Kroth-Pancic P. Stable nuclear transformation of the diatom Phaeodactylum tricornutum. Mol Gen Genet MGG. 1996;252:572-9.
21. De Risco V, Raniello R, Maumus F, Rogato A, Bowler C, Falciatore A. Gene silencing in the marine diatom Phaeodactylum tricornutum. NAR. 2009;37:e96-6.
22. Siaut M, Heijde M, Mangogna M, Montsant A, Coesel S, Allen A, et al. Molecular toolbox for studying diatom biology in Phaeodactylum tricornutum. Gene. 2007;406:23-35.
23. Zaslavskaia L, Lippmeier J, Kroth P, Grossman A, Apt K. Transformation of the diatom Phaeodactylum tricornutum (Bacillariophyceae) with a variety of selectable marker and reporter genes. J Phycol. 2000;36:379-86.
24. Ceron-Garcia MC, Fernandez-Sevilla JM, Sanchez-Miron A, Garcia-Camacho F, Contreras-Gomez A, Molina-Grima E. Mixotrophic growth of Phaeodactylum tricornutum on fructose and glycerol in fed-batch and semi-continuous modes. Bioresour Technol. 2013;147:569-76.
25. Ukeles R, Rose WE. Observations on organic-carbon utilization by photosynthetic marine microalgae. Mar Biol. 1976;37:11-28.
26. Zheng YT, Quinn AH, Sriram G. Experimental evidence and isotopomer analysis of mixotrophic glucose metabolism in the marine diatom Phaeodactylum tricornutum. Microb Cell Fact. 2013;12:16.
27. 13C-experiments and gas chromatography-mass spectrometry data. Methods Mol Biol. 2007;358:92.
28. Rosman K, Taylor P. Isotopic compositions of the elements 1997. JPCRD. 1998;27:1275.
29. Guerra LT, Levitan O, Frada MJ, Sun JS, Falkowski PG, Dismukes GC. Regulatory branch points affecting protein and lipid biosynthesis in the diatom Phaeodactylum tricornutum. Biomass & Bioenergy. 2013;59:306-15.
30. Allen AE, Dupont CL, Obornik M, Horak A, Nunes-Nesi A, McCrow JP, et al. Evolution and metabolic significance of the urea cycle in photosynthetic diatoms. Nature. 2011;473:203-9.
31. Edwards U, Rogall T, Blocker H, Emde M, Bottger EC. Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S-ribosomal RNA. NAR. 1989;17:7843-53.
32. Weisburg WG, Barns SM, Pelletier DA, Lane DJ. 16 s ribosomal DNA amplification for phylogenetic study. J Bacteriol. 1991;173:697-703.
33. Colman B, Norman EG. Serine synthesis in cyanobacteria by a nonphotorespiratory pathway. Physiol Plant. 1997;100:133-6.
34. 2 cycle. Crit Rev Plant Sci. 1987;5:45-100.
35. Rachmilevitch S, Cousins AB, Bloom AJ. Nitrate assimilation in plant shoots depends on photorespiration. Proc Natl Acad Sci U S A. 2004;101:11506-10.
36. Hockin NL, Mock T, Mulholland F, Kopriva S, Malin G. The response of diatom central carbon metabolism to nitrogen starvation is different from that of green algae and higher plants. Plant Physiol. 2012;158:299-312.
37. Peterhansel C, Blume C, Offermann S. Photorespiratory bypasses: how can they work? JExB. 2013;64:709-15.
38. Maier A, Fahnenstich H, Von Caemmerer S, Engqvist M, Weber A, Flugge U, et al. Glycolate oxidation in A. thaliana chloroplasts improves biomass production. Frontiers in Plant Science. 2012;3:38.
39. Fahnenstich H, Scarpeci TE, Valle EM, Flügge U-I, Maurino VG. Generation of hydrogen peroxide in chloroplasts of Arabidopsis overexpressing glycolate oxidase as an inducible system to study oxidative stress. Plant Physiol. 2008;148:719-29.
40. Yang Z-K, Niu Y-F, Ma Y-H, Xue J, Zhang M-H, Yang W-D, et al. Molecular and cellular mechanisms of neutral lipid accumulation in diatom following nitrogen deprivation. Biotechnology for Biofuels. 2013;6:67.
41. Guillard, Robert RL. Culture of phytoplankton for feeding marine invertebrates. In: Smith WL, Chanley MH, editors. Culture of marine invertebrate animals. New York: Plenum Press; 1975. p. 29-60.
42. Harrison P, Waters R, Taylor F. A broad spectrum artificial sea water medium for coastal and open ocean phytoplankton. J Phycol. 1980;16:28-35.
43. Sun L, Huang A, Gu W, Ma Y, Zhu D, Wang G. Hydrogen production by Enterobacter cloacae isolated from sugar refinery sludge. IJHE. 2015;40:1402-7.
44. Bligh EG, Dyer WJ. A rapid method of total lipid extraction and purification. Can J Biochem Physiol. 1959;37:911-7.
45. 13C-tracer and gas chromatography-mass spectrometry analyses reveal metabolic flux distribution in the oleaginous microalga Chlorella protothecoides. Plant Physiol. 2010;154:1001-11.
46. Fischer E, Sauer U. Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC-MS. EJBio. 2003;270:880-91.
47. Ge F, Huang WC, Chen Z, Zhang CY, Xiong Q, Bowler C, et al. Methylcrotonyl-coa carboxylase regulates triacylglycerol accumulation in the model diatom Phaeodactylum tricornutum. Plant Cell. 2014;26:1681-97.