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Volumn 2014, Issue , 2014, Pages

The relevance of HLA sequencing in population genetics studies

Author keywords

[No Author keywords available]

Indexed keywords

DNA; HLA ANTIGEN; MAJOR HISTOCOMPATIBILITY ANTIGEN;

EID: 84929138433     PISSN: 23148861     EISSN: 23147156     Source Type: Journal    
DOI: 10.1155/2014/971818     Document Type: Review
Times cited : (43)

References (85)
  • 1
    • 0016176701 scopus 로고
    • Human migrations and linkage disequilibrium of HLA system
    • L. Degos and J. Dausset, "Human migrations and linkage disequilibrium of HLA system, " Immunogenetics, vol. 1, no. 1, pp. 195-210, 1974.
    • (1974) Immunogenetics , vol.1 , Issue.1 , pp. 195-210
    • Degos, L.1    Dausset, J.2
  • 2
    • 0018080152 scopus 로고
    • Synthetic maps of human gene frequencies in Europeans
    • P. Menozzi, A. Piazza, and L. Cavalli-Sforza, "Synthetic maps of human gene frequencies in Europeans, " Science, vol. 201, no. 4358, pp. 786-792, 1978.
    • (1978) Science , vol.201 , Issue.4358 , pp. 786-792
    • Menozzi, P.1    Piazza, A.2    Cavalli-Sforza, L.3
  • 4
    • 0001879462 scopus 로고
    • Spatial autocorrelations of HLA frequencies in Europe support demic diffustion of early farmers
    • R. R. Sokal and P. Menozzi, "Spatial autocorrelations of HLA frequencies in Europe support demic diffustion of early farmers, " American Naturalist, vol. 119, pp. 1-17, 1982.
    • (1982) American Naturalist , vol.119 , pp. 1-17
    • Sokal, R.R.1    Menozzi, P.2
  • 8
    • 0000857645 scopus 로고
    • Allele and haplotype frequencies forHLAand complement loci in various ethnic groups
    • K. Tsuji, M. Aizawa, and T. Sasazuki, Eds. Oxford University Press, Oxford, UK
    • T. Imanishi, T. Akaza, A. Kimura, K. Tokunaga, and T. Gojobori, "Allele and haplotype frequencies forHLAand complement loci in various ethnic groups, " in HLA 1991, K. Tsuji, M. Aizawa, and T. Sasazuki, Eds., pp. 1065-1220, Oxford University Press, Oxford, UK, 1992.
    • (1992) HLA 1991 , pp. 1065-1220
    • Imanishi, T.1    Akaza, T.2    Kimura, A.3    Tokunaga, K.4    Gojobori, T.5
  • 10
    • 77953298173 scopus 로고    scopus 로고
    • Analysis of the HLA population data (AHPD) submitted to the 15th International histocompatibility/immunogenetics Workshop by using the Generate computer tools accommodating ambiguous data (AHPDproject report)
    • J. M. Nunes, M. E. Riccio, S. Buhler, et al., "Analysis of the HLA population data (AHPD) submitted to the 15th International histocompatibility/immunogenetics Workshop by using the Generate computer tools accommodating ambiguous data (AHPDproject report), " TissueAntigens, vol. 76, no. 1, pp. 18-30, 2010.
    • (2010) TissueAntigens , vol.76 , Issue.1 , pp. 18-30
    • Nunes, J.M.1    Riccio, M.E.2    Buhler, S.3
  • 11
    • 84872277091 scopus 로고    scopus 로고
    • 16th IHIW: Analysis of HLA population data, with updated results for 1996 to 2012 workshop data (AHPD project report)
    • M. E. Riccio, S. Buhler, J. M. Nunes, et al., "16th IHIW: analysis of HLA population data, with updated results for 1996 to 2012 workshop data (AHPD project report), " International Journal of Immunogenetics, vol. 40, no. 1, pp. 21-30, 2013.
    • (2013) International Journal of Immunogenetics , vol.40 , Issue.1 , pp. 21-30
    • Riccio, M.E.1    Buhler, S.2    Nunes, J.M.3
  • 12
    • 0034744361 scopus 로고    scopus 로고
    • How selection shapes variation of the human major histocompatibility complex: A review
    • D. Meyer and G. Thomson, "How selection shapes variation of the human major histocompatibility complex: a review, " Annals of Human Genetics, vol. 65, no. 1, pp. 1-26, 2001.
    • (2001) Annals of Human Genetics , vol.65 , Issue.1 , pp. 1-26
    • Meyer, D.1    Thomson, G.2
  • 14
    • 34548312401 scopus 로고    scopus 로고
    • Global diversity and evidence for coevolution of KIR andHLA
    • R. M. Single, M. P. Martin, X. Gao, et al., "Global diversity and evidence for coevolution of KIR andHLA, "Nature Genetics, vol. 39, no. 9, pp. 1114-1119, 2007.
    • (2007) Nature Genetics , vol.39 , Issue.9 , pp. 1114-1119
    • Single, R.M.1    Martin, M.P.2    Gao, X.3
  • 16
    • 80051510227 scopus 로고    scopus 로고
    • Allele frequency estimation from ambiguous data: Using resampling schema in validating frequency estimates and in selective neutrality testing
    • J. M. Nunes, M. E. Riccio, J. Tiercy, and A. Sanchez-Mazas, "Allele frequency estimation from ambiguous data: Using resampling schema in validating frequency estimates and in selective neutrality testing, " Human Biology, vol. 83, no. 3, pp. 437-447, 2011.
    • (2011) Human Biology , vol.83 , Issue.3 , pp. 437-447
    • Nunes, J.M.1    Riccio, M.E.2    Tiercy, J.3    Sanchez-Mazas, A.4
  • 17
    • 78651292217 scopus 로고    scopus 로고
    • Allele frequency net: A database and online repository for immune gene frequencies in worldwide populations
    • F. F. Gonzalez-Galarza, S. Christmas, D. Middleton, and A. R. Jones, "Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations, " Nucleic Acids Research, vol. 39, no. 1, pp. D913-D919, 2011.
    • (2011) Nucleic Acids Research , vol.39 , Issue.1 , pp. D913-D919
    • Gonzalez-Galarza, F.F.1    Christmas, S.2    Middleton, D.3    Jones, A.R.4
  • 18
    • 84901492011 scopus 로고    scopus 로고
    • The HLA-net Generate pipeline for effective HLA data analysis and its application to 145 populations fromEurope and neighbouring areas
    • J. M. Nunes, S. Buhler, D. Roessli, and A. Sanchez-Mazas, "The HLA-net Generate pipeline for effective HLA data analysis and its application to 145 populations fromEurope and neighbouring areas, " Tissue Antigens, vol. 83, pp. 307-323, 2014.
    • (2014) Tissue Antigens , vol.83 , pp. 307-323
    • Nunes, J.M.1    Buhler, S.2    Roessli, D.3    Sanchez-Mazas, A.4
  • 19
    • 51749101703 scopus 로고    scopus 로고
    • Balancing selection and heterogeneity across the classical human leukocyte antigen loci: A meta-analytic review of 497 population studies
    • O. D. Solberg, S. J. Mack, A. K. Lancaster, et al., "Balancing selection and heterogeneity across the classical human leukocyte antigen loci: a meta-analytic review of 497 population studies, " Human Immunology, vol. 69, no. 7, pp. 443-464, 2008.
    • (2008) Human Immunology , vol.69 , Issue.7 , pp. 443-464
    • Solberg, O.D.1    Mack, S.J.2    Lancaster, A.K.3
  • 20
    • 84901479037 scopus 로고    scopus 로고
    • A new HLA map of Europe: Regional genetic variation and its implication for peopling history, disease-association studies and tissue transplantation
    • A. Sanchez-Mazas, S. Buhler, and J. M. Nunes, "A new HLA map of Europe: regional genetic variation and its implication for peopling history, disease-association studies and tissue transplantation, " Human Heredity, vol. 76, no. 3-4, pp. 162-177, 2013.
    • (2013) Human Heredity , vol.76 , Issue.3-4 , pp. 162-177
    • Sanchez-Mazas, A.1    Buhler, S.2    Nunes, J.M.3
  • 21
    • 79551639467 scopus 로고    scopus 로고
    • HLA DNA sequence variation among human populations:molecular signatures of demographic and selective events
    • Article ID e14643
    • S. Buhler and A. Sanchez-Mazas, "HLA DNA sequence variation among human populations:molecular signatures of demographic and selective events, " PLoS ONE, vol. 6, no. 2, Article ID e14643, 2011.
    • (2011) PLoS ONE , vol.6 , Issue.2
    • Buhler, S.1    Sanchez-Mazas, A.2
  • 22
    • 77955109838 scopus 로고    scopus 로고
    • Humangenetic differentiation across the Strait of Gibraltar
    • article 237
    • M. Currat, E. S. Poloni, and A. Sanchez-Mazas, "Humangenetic differentiation across the Strait of Gibraltar, " BMC Evolutionary Biology, vol. 10, no. 1, article 237, 2010.
    • (2010) BMC Evolutionary Biology , vol.10 , Issue.1
    • Currat, M.1    Poloni, E.S.2    Sanchez-Mazas, A.3
  • 23
    • 33747870460 scopus 로고    scopus 로고
    • Signatures of demographic history and natural selection in the human major histocompatibility complex loci
    • D. Meyer, R. M. Single, S. J. Mack, H. A. Erlich, and G. Thomson, "Signatures of demographic history and natural selection in the human major histocompatibility complex loci, " Genetics, vol. 173, no. 4, pp. 2121-2142, 2006.
    • (2006) Genetics , vol.173 , Issue.4 , pp. 2121-2142
    • Meyer, D.1    Single, R.M.2    Mack, S.J.3    Erlich, H.A.4    Thomson, G.5
  • 24
    • 79955001666 scopus 로고    scopus 로고
    • Immunogenetics as a tool in anthropological studies
    • A. Sanchez-Mazas, M. Fernandez-Viña, D. Middleton, et al., "Immunogenetics as a tool in anthropological studies, " Immunology, vol. 133, no. 2, pp. 143-164, 2011.
    • (2011) Immunology , vol.133 , Issue.2 , pp. 143-164
    • Sanchez-Mazas, A.1    Fernandez-Viña, M.2    Middleton, D.3
  • 25
    • 84892976830 scopus 로고    scopus 로고
    • HLA typing by nextgeneration sequencing-getting closer to reality
    • C. Gabriel, D. Furst, I. Fae, et al., "HLA typing by nextgeneration sequencing-getting closer to reality, " Tissue Antigens, vol. 83, no. 2, pp. 65-75, 2014.
    • (2014) Tissue Antigens , vol.83 , Issue.2 , pp. 65-75
    • Gabriel, C.1    Furst, D.2    Fae, I.3
  • 26
    • 0021038163 scopus 로고
    • Estimationof the coancestry coefficient: Basis for a short-term genetic distance
    • J. Reynolds, B. S. Weir, and C. C. Cockerham, "Estimationof the coancestry coefficient: basis for a short-term genetic distance, " Genetics, vol. 105, no. 3, pp. 767-779, 1983.
    • (1983) Genetics , vol.105 , Issue.3 , pp. 767-779
    • Reynolds, J.1    Weir, B.S.2    Cockerham, C.C.3
  • 27
    • 0000862605 scopus 로고
    • The interpretation of population structure by Fstatistics with special regard to systems of mating
    • S. Wright, "The interpretation of population structure by Fstatistics with special regard to systems of mating, " Evolution International Journal of Organic Evolution, vol. 19, pp. 395-420, 1965.
    • (1965) Evolution International Journal of Organic Evolution , vol.19 , pp. 395-420
    • Wright, S.1
  • 28
    • 0026681074 scopus 로고
    • Analysis ofmolecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
    • L. Excoffier, P. E. Smouse, and J. M. Quattro, "Analysis ofmolecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data, " Genetics, vol. 131, no. 2, pp. 479-491, 1992.
    • (1992) Genetics , vol.131 , Issue.2 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 29
    • 0001359013 scopus 로고    scopus 로고
    • Natural selection and the evolutionary history of major histocompatibility complex loci
    • A. L. Hughes and M. Yeager, "Natural selection and the evolutionary history of major histocompatibility complex loci, " Frontiers in Bioscience, vol. 3, pp. 509-516, 1998.
    • (1998) Frontiers in Bioscience , vol.3 , pp. 509-516
    • Hughes, A.L.1    Yeager, M.2
  • 30
    • 0023764283 scopus 로고
    • Pattern of nucleotide substitution at major histocompatibility complex class i loci reveals overdominant selection
    • A. L. Hughes and M. Nei, "Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection, " Nature, vol. 335, no. 6186, pp. 167-170, 1988.
    • (1988) Nature , vol.335 , Issue.6186 , pp. 167-170
    • Hughes, A.L.1    Nei, M.2
  • 31
    • 0040771786 scopus 로고
    • Nucleotide substitution at major histocompatibility complex class II loci: Evidence for overdominant selection
    • A. L. Hughes and M. Nei, "Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection, " Proceedings of the National Academy of Sciences of the United States of America, vol. 86, no. 3, pp. 958-962, 1989.
    • (1989) Proceedings of the National Academy of Sciences of the United States of America , vol.86 , Issue.3 , pp. 958-962
    • Hughes, A.L.1    Nei, M.2
  • 32
    • 84890816866 scopus 로고    scopus 로고
    • HLA-A, -B, -C, -DRB1 and -DQB1 allele and haplotype frequencies in Saudis using next generation sequencing technique
    • A. H. Hajeer, M. A. Al Balwi, F. Aytül Uyar, et al., "HLA-A, -B, -C, -DRB1 and -DQB1 allele and haplotype frequencies in Saudis using next generation sequencing technique, " Tissue Antigens, vol. 82, no. 4, pp. 252-258, 2013.
    • (2013) Tissue Antigens , vol.82 , Issue.4 , pp. 252-258
    • Hajeer, A.H.1    Al Balwi, M.A.2    Aytül Uyar, F.3
  • 33
    • 84894271228 scopus 로고    scopus 로고
    • Identification of 2127 new HLA class i alleles in potential stem cell donors from Germany
    • C. J. Hernandez-Frederick, A. S. Giani, and N. Cereb, "Identification of 2127 new HLA class I alleles in potential stem cell donors from Germany, " Tissue Antigens, vol. 83, no. 3, pp. 184-189, 2014.
    • (2014) Tissue Antigens , vol.83 , Issue.3 , pp. 184-189
    • Hernandez-Frederick, C.J.1    Giani, A.S.2    Cereb, N.3
  • 34
    • 84895876454 scopus 로고    scopus 로고
    • Worldwide genetic variation at the 3 untranslated region of the HLA-G gene: Balancing selection influencing genetic diversity
    • A. Sabbagh, P. Luisi, E. C. Castelli, et al., "Worldwide genetic variation at the 3 untranslated region of the HLA-G gene: balancing selection influencing genetic diversity, " Genes and Immunity, vol. 15, pp. 95-106, 2014.
    • (2014) Genes and Immunity , vol.15 , pp. 95-106
    • Sabbagh, A.1    Luisi, P.2    Castelli, E.C.3
  • 35
    • 58849104457 scopus 로고    scopus 로고
    • The HLA genomic loci map: Expression, interaction, diversity and disease
    • T. Shiina, K. Hosomichi, H. Inoko, and J. K. Kulski, "The HLA genomic loci map: expression, interaction, diversity and disease, " Journal of Human Genetics, vol. 54, no. 1, pp. 15-39, 2009.
    • (2009) Journal of Human Genetics , vol.54 , Issue.1 , pp. 15-39
    • Shiina, T.1    Hosomichi, K.2    Inoko, H.3    Kulski, J.K.4
  • 36
    • 84873708504 scopus 로고    scopus 로고
    • Filling the gaps-the generation of full genomic sequences for 15 common and well-documented HLA class i alleles using next-generation sequencing technology
    • C. Lind, D. Ferriola, K. Mackiewicz, A. Papazoglou, A. Sasson, and D. Monos, "Filling the gaps-the generation of full genomic sequences for 15 common and well-documented HLA class I alleles using next-generation sequencing technology, " Human Immunology, vol. 74, no. 3, pp. 325-329, 2013.
    • (2013) Human Immunology , vol.74 , Issue.3 , pp. 325-329
    • Lind, C.1    Ferriola, D.2    Mackiewicz, K.3    Papazoglou, A.4    Sasson, A.5    Monos, D.6
  • 37
    • 84879786890 scopus 로고    scopus 로고
    • A brief review on theHuman Encyclopedia of DNA Elements (ENCODE) project
    • H. Qu and X. Fang, "A brief review on theHuman Encyclopedia of DNA Elements (ENCODE) project, " Genomics, Proteomics& Bioinformatics, vol. 11, no. 3, pp. 135-141, 2013.
    • (2013) Genomics, Proteomics& Bioinformatics , vol.11 , Issue.3 , pp. 135-141
    • Qu, H.1    Fang, X.2
  • 38
    • 0036783307 scopus 로고    scopus 로고
    • High-resolution patterns of meiotic recombination across the human major histocompatibility complex
    • M. Cullen, S. P. Perfetto, W. Klitz, G. Nelson, and M. Carrington, "High-resolution patterns of meiotic recombination across the human major histocompatibility complex, " The American Journal of Human Genetics, vol. 71, no. 4, pp. 759-776, 2002.
    • (2002) The American Journal of Human Genetics , vol.71 , Issue.4 , pp. 759-776
    • Cullen, M.1    Perfetto, S.P.2    Klitz, W.3    Nelson, G.4    Carrington, M.5
  • 39
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
    • Y.-X. Fu, "Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection, " Genetics, vol. 147, no. 2, pp. 915-925, 1997.
    • (1997) Genetics , vol.147 , Issue.2 , pp. 915-925
    • Fu, Y.-X.1
  • 40
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis byDNA polymorphism
    • F. Tajima, "Statistical method for testing the neutral mutation hypothesis byDNA polymorphism, " Genetics, vol. 123, no. 3, pp. 585-595, 1989.
    • (1989) Genetics , vol.123 , Issue.3 , pp. 585-595
    • Tajima, F.1
  • 41
    • 34247203565 scopus 로고    scopus 로고
    • Common and welldocumented HLA alleles: Report of the Ad-Hoc committee of the American society for histocompatiblity and immunogenetics
    • P. Cano, W. Klitz, S. J. Mack, et al., "Common and welldocumented HLA alleles: report of the Ad-Hoc committee of the american society for histocompatiblity and immunogenetics, " Human Immunology, vol. 68, no. 5, pp. 392-417, 2007.
    • (2007) Human Immunology , vol.68 , Issue.5 , pp. 392-417
    • Cano, P.1    Klitz, W.2    Mack, S.J.3
  • 42
    • 84875491896 scopus 로고    scopus 로고
    • Common and welldocumented HLA alleles: 2012 update to the CWD catalogue
    • S. J. Mack, P. Cano, J. A. Hollenbach, et al., "Common and welldocumented HLA alleles: 2012 update to the CWD catalogue, " Tissue Antigens, vol. 81, no. 4, pp. 194-203, 2013.
    • (2013) Tissue Antigens , vol.81 , Issue.4 , pp. 194-203
    • Mack, S.J.1    Cano, P.2    Hollenbach, J.A.3
  • 44
    • 84355161757 scopus 로고    scopus 로고
    • Common and well-documented (CWD) alleles of human leukocyte antigen-A, -B, -C, -DRB1, and -DQB1 loci for the Chinese Han population do not quite correlatewith the ASHICWDalleles
    • J. He, Y. Li, X. Bao, et al., "Common and well-documented (CWD) alleles of human leukocyte antigen-A, -B, -C, -DRB1, and -DQB1 loci for the Chinese Han population do not quite correlatewith the ASHICWDalleles, "Human Immunology, vol. 73, no. 1, pp. 61-66, 2012.
    • (2012) Human Immunology , vol.73 , Issue.1 , pp. 61-66
    • He, J.1    Li, Y.2    Bao, X.3
  • 45
    • 84866414827 scopus 로고    scopus 로고
    • New reservoirs of HLA alleles: Pools of rare variants enhance immune defense
    • W. Klitz, P. Hedrick, and E. J. Louis, "New reservoirs of HLA alleles: Pools of rare variants enhance immune defense, " Trends in Genetics, vol. 28, no. 10, pp. 480-486, 2012.
    • (2012) Trends in Genetics , vol.28 , Issue.10 , pp. 480-486
    • Klitz, W.1    Hedrick, P.2    Louis, E.J.3
  • 47
    • 80052825195 scopus 로고    scopus 로고
    • The functional spectrum of low-frequency coding variation
    • article R84
    • G. T. Marth, F. Yu, A. R. Indap, et al., "The functional spectrum of low-frequency coding variation, " Genome Biology, vol. 12, no. 9, article R84, 2011.
    • (2011) Genome Biology , vol.12 , Issue.9
    • Marth, G.T.1    Yu, F.2    Indap, A.R.3
  • 48
    • 78049360110 scopus 로고    scopus 로고
    • Genomics: In search of rare human variants
    • R. Nielsen, "Genomics: in search of rare human variants, " Nature, vol. 467, no. 7319, pp. 1050-1051, 2010.
    • (2010) Nature , vol.467 , Issue.7319 , pp. 1050-1051
    • Nielsen, R.1
  • 49
    • 0023616527 scopus 로고
    • Origin of major histocompatibility complex polymorphism: The trans-species hypothesis
    • J. Klein, "Origin of major histocompatibility complex polymorphism: the trans-species hypothesis, " Human Immunology, vol. 19, no. 3, pp. 155-162, 1987.
    • (1987) Human Immunology , vol.19 , Issue.3 , pp. 155-162
    • Klein, J.1
  • 50
    • 84875508254 scopus 로고    scopus 로고
    • Multiple instances of ancient balancing selection shared between humans and chimpanzees
    • E. M. Leffler, Z. Gao, S. Pfeifer, et al., "Multiple instances of ancient balancing selection shared between humans and chimpanzees, " Science, vol. 339, no. 6127, pp. 1578-1582, 2013.
    • (2013) Science , vol.339 , Issue.6127 , pp. 1578-1582
    • Leffler, E.M.1    Gao, Z.2    Pfeifer, S.3
  • 51
    • 33847790861 scopus 로고    scopus 로고
    • Full-length sequence analysis of the HLA-DRB1 locus suggests a recent origin of alleles
    • J. von Salomé, U. Gyllensten, and T. F. Bergström, "Full-length sequence analysis of the HLA-DRB1 locus suggests a recent origin of alleles, " Immunogenetics, vol. 59, no. 4, pp. 261-271, 2007.
    • (2007) Immunogenetics , vol.59 , Issue.4 , pp. 261-271
    • Von Salomé, J.1    Gyllensten, U.2    Bergström, T.F.3
  • 52
    • 34548396076 scopus 로고    scopus 로고
    • MHC, TSP, and the origin of species: From immunogenetics to evolutionary genetics
    • J. Klein, A. Sato, and N. Nikolaidis, "MHC, TSP, and the origin of species: from immunogenetics to evolutionary genetics, " Annual Review of Genetics, vol. 41, pp. 281-304, 2007.
    • (2007) Annual Review of Genetics , vol.41 , pp. 281-304
    • Klein, J.1    Sato, A.2    Nikolaidis, N.3
  • 53
    • 0026711015 scopus 로고
    • Polymorphism and balancing selection at major histocompatibility complex loci
    • N. Takahata, Y. Satta, and J. Klein, "Polymorphism and balancing selection at major histocompatibility complex loci, " Genetics, vol. 130, no. 4, pp. 925-938, 1992.
    • (1992) Genetics , vol.130 , Issue.4 , pp. 925-938
    • Takahata, N.1    Satta, Y.2    Klein, J.3
  • 54
    • 0023163377 scopus 로고
    • Mitochondrial DNA and human evolution
    • R. L. Cann, M. Stoneking, and A. C. Wilson, "Mitochondrial DNA and human evolution, " Nature, vol. 325, no. 6099, pp. 31-36, 1987.
    • (1987) Nature , vol.325 , Issue.6099 , pp. 31-36
    • Cann, R.L.1    Stoneking, M.2    Wilson, A.C.3
  • 55
    • 33646928341 scopus 로고    scopus 로고
    • Discordance of species trees with their most likely gene trees
    • J. H. Degnanand N. A. Rosenberg, "Discordance of species trees with their most likely gene trees, " PLoS Genetics, vol. 2, no. 5, p. e68, 2006.
    • (2006) PLoS Genetics , vol.2 , Issue.5 , pp. e68
    • Degnanand, J.H.1    Rosenberg, N.A.2
  • 56
    • 0023822631 scopus 로고
    • Relationship between gene trees and species trees
    • P. Pamilo and M. Nei, "Relationship between gene trees and species trees, " Molecular Biology and Evolution, vol. 5, no. 5, pp. 568-583, 1988.
    • (1988) Molecular Biology and Evolution , vol.5 , Issue.5 , pp. 568-583
    • Pamilo, P.1    Nei, M.2
  • 57
    • 84856660968 scopus 로고    scopus 로고
    • Tracking human migrations by the analysis of the distribution of HLA alleles, lineages and haplotypes in closed and open populations
    • M. A. F. Vina, J. A. Hollenbach, K. E. Lyke, et al., "Tracking human migrations by the analysis of the distribution of HLA alleles, lineages and haplotypes in closed and open populations, " Philosophical Transactions of the Royal Society B: Biological Sciences, vol. 367, no. 1590, pp. 820-829, 2012.
    • (2012) Philosophical Transactions of the Royal Society B: Biological Sciences , vol.367 , Issue.1590 , pp. 820-829
    • Vina, M.A.F.1    Hollenbach, J.A.2    Lyke, K.E.3
  • 58
    • 0000913208 scopus 로고    scopus 로고
    • Coalescent theory
    • D. Balding, C. Bishop, and C. Cannings, Eds. John Wiley & Sons, NewYork, NY, USA
    • M. Nordborg, "Coalescent theory, " in Handbook of Statistical Genetics, D. Balding, C. Bishop, and C. Cannings, Eds., pp. 179-212, JohnWiley & Sons, NewYork, NY, USA, 2001.
    • (2001) Handbook of Statistical Genetics , pp. 179-212
    • Nordborg, M.1
  • 59
    • 1642388330 scopus 로고    scopus 로고
    • Patterns of DNA sequence diversity and genetic structure after a range expansion: Lessons from the infiniteisland model
    • L. Excoffier, "Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infiniteisland model, " Molecular Ecology, vol. 13, no. 4, pp. 853-864, 2004.
    • (2004) Molecular Ecology , vol.13 , Issue.4 , pp. 853-864
    • Excoffier, L.1
  • 61
    • 0037227366 scopus 로고    scopus 로고
    • Intra-deme molecular diversity in spatially expanding populations
    • N. Ray, M. Currat, and L. Excoffier, "Intra-deme molecular diversity in spatially expanding populations, "Molecular Biology and Evolution, vol. 20, no. 1, pp. 76-86, 2003.
    • (2003) Molecular Biology and Evolution , vol.20 , Issue.1 , pp. 76-86
    • Ray, N.1    Currat, M.2    Excoffier, L.3
  • 63
    • 33749137515 scopus 로고    scopus 로고
    • A highresolution HLA and SNP haplotypemap for disease association studies in the extended human MHC
    • P. I. W. De Bakker, G. McVean, P. C. Sabeti, et al., "A highresolution HLA and SNP haplotypemap for disease association studies in the extended human MHC, " Nature Genetics, vol. 38, no. 10, pp. 1166-1172, 2006.
    • (2006) Nature Genetics , vol.38 , Issue.10 , pp. 1166-1172
    • De Bakker, P.I.W.1    McVean, G.2    Sabeti, P.C.3
  • 64
    • 39749197456 scopus 로고    scopus 로고
    • Genotype, haplotype and copy-number variation in worldwide human populations
    • M. Jakobsson, S. W. Scholz, P. Scheet, et al., "Genotype, haplotype and copy-number variation in worldwide human populations, " Nature, vol. 451, no. 7181, pp. 998-1003, 2008.
    • (2008) Nature , vol.451 , Issue.7181 , pp. 998-1003
    • Jakobsson, M.1    Scholz, S.W.2    Scheet, P.3
  • 65
    • 66049128908 scopus 로고    scopus 로고
    • Darwinian and demographic forces affecting human protein coding genes
    • R. Nielsen, M. J. Hubisz, I. Hellmann, et al., "Darwinian and demographic forces affecting human protein coding genes, " Genome Research, vol. 19, no. 5, pp. 838-849, 2009.
    • (2009) Genome Research , vol.19 , Issue.5 , pp. 838-849
    • Nielsen, R.1    Hubisz, M.J.2    Hellmann, I.3
  • 67
    • 70350136774 scopus 로고    scopus 로고
    • Efficient approximate Bayesian computation coupled with markov chain monte carlo without likelihood
    • D. Wegmann, C. Leuenberger, and L. Excoffier, "Efficient approximate bayesian computation coupled with markov chain monte carlo without likelihood, " Genetics, vol. 182, no. 4, pp. 1207-1218, 2009.
    • (2009) Genetics , vol.182 , Issue.4 , pp. 1207-1218
    • Wegmann, D.1    Leuenberger, C.2    Excoffier, L.3
  • 68
    • 84942889669 scopus 로고    scopus 로고
    • Computer simulation of HLA genes supports two main routes of colonization by human populations in East Asia
    • D. Di, A. Sanchez-Mazas, and M. Currat, "Computer simulation of HLA genes supports two main routes of colonization by human populations in East Asia, " Tissue Antigens, vol. 84, p. 128, 2014.
    • (2014) Tissue Antigens , vol.84 , pp. 128
    • Di, D.1    Sanchez-Mazas, A.2    Currat, M.3
  • 70
    • 84878018059 scopus 로고    scopus 로고
    • Current perspectives on the intensity of natural selection of MHC loci
    • Y. Yasukochi and Y. Satta, "Current perspectives on the intensity of natural selection of MHC loci, " Immunogenetics, vol. 65, no. 6, pp. 479-483, 2013.
    • (2013) Immunogenetics , vol.65 , Issue.6 , pp. 479-483
    • Yasukochi, Y.1    Satta, Y.2
  • 71
    • 84885020424 scopus 로고    scopus 로고
    • Genome-wide association analysis identifies 13 new risk loci for schizophrenia
    • S. Ripke, C. ODushlaine, K. Chambert, et al., "Genome-wide association analysis identifies 13 new risk loci for schizophrenia, " Nature Genetics, vol. 45, pp. 1150-1159, 2013.
    • (2013) Nature Genetics , vol.45 , pp. 1150-1159
    • Ripke, S.1    ODushlaine, C.2    Chambert, K.3
  • 72
    • 80052748466 scopus 로고    scopus 로고
    • Perspectives on human population structure at the cusp of the sequencing era
    • J. Novembre and S. Ramachandran, "Perspectives on human population structure at the cusp of the sequencing era, " Annual Review of Genomics and Human Genetics, vol. 12, pp. 245-274, 2011.
    • (2011) Annual Review of Genomics and Human Genetics , vol.12 , pp. 245-274
    • Novembre, J.1    Ramachandran, S.2
  • 73
    • 84975742565 scopus 로고    scopus 로고
    • Amap of human genome variation frompopulation-scale sequencing
    • 1000 Genomes Project Consortium
    • 1000Genomes ProjectConsortium, G. R. Abecasis, D. Altshuler, et al., "Amap of human genome variation frompopulation-scale sequencing, " Nature, vol. 467, no. 7319, pp. 1061-1073, 2010.
    • (2010) Nature , vol.467 , Issue.7319 , pp. 1061-1073
    • Abecasis, G.R.1    Altshuler, D.2
  • 74
    • 79953314023 scopus 로고    scopus 로고
    • HLA∗IMP-an integrated framework for imputing classical HLA alleles from SNP genotypes
    • A. T. Dilthey, L. Moutsianas, S. Leslie, and G. McVean, "HLA∗IMP-an integrated framework for imputing classical HLA alleles from SNP genotypes, " Bioinformatics, vol. 27, no. 7, pp. 968-972, 2011.
    • (2011) Bioinformatics , vol.27 , Issue.7 , pp. 968-972
    • Dilthey, A.T.1    Moutsianas, L.2    Leslie, S.3    McVean, G.4
  • 75
    • 38749115455 scopus 로고    scopus 로고
    • A statistical method for predicting classicalHLAAlleles from SNPData
    • S. Leslie, P. Donnelly, and G. McVean, "AStatistical Method for Predicting ClassicalHLAAlleles fromSNPData, "TheAmerican Journal of Human Genetics, vol. 82, no. 1, pp. 48-56, 2008.
    • (2008) The American Journal of Human Genetics , vol.82 , Issue.1 , pp. 48-56
    • Leslie, S.1    Donnelly, P.2    McVean, G.3
  • 76
    • 84897449354 scopus 로고    scopus 로고
    • HIBAG-HLA genotype imputation with attribute bagging
    • X. Zheng, J. Shen, C. Cox, et al., "HIBAG-HLA genotype imputation with attribute bagging, " Pharmacogenomics Journal, vol. 14, pp. 192-200, 2014.
    • (2014) Pharmacogenomics Journal , vol.14 , pp. 192-200
    • Zheng, X.1    Shen, J.2    Cox, C.3
  • 77
    • 84898827319 scopus 로고    scopus 로고
    • Evaluation of HLA-DRB1 imputation using a Finnish dataset
    • E. Vlachopoulou, E. Lahtela, A. Wennerström, et al., "Evaluation of HLA-DRB1 imputation using a Finnish dataset, " Tissue Antigens, vol. 83, pp. 350-355, 2014.
    • (2014) Tissue Antigens , vol.83 , pp. 350-355
    • Vlachopoulou, E.1    Lahtela, E.2    Wennerström, A.3
  • 78
    • 78651451727 scopus 로고    scopus 로고
    • Next-generation sequencing for HLAtyping of class i loci
    • article 42
    • R. L. Erlich, X. Jia, S. Andersonet al., "Next-generation sequencing for HLAtyping of class I loci, "BMCGenomics, vol. 12, article 42, 2011.
    • (2011) BMCGenomics , vol.12
    • Erlich, R.L.1    Jia, X.2    Anderson, S.3
  • 79
    • 84892404218 scopus 로고    scopus 로고
    • HLA typing from 1000 genomes whole genome and whole exome illumina data
    • Article ID e78410
    • E. Major, K. Rigó, T. Hague, A. Bérces, and S. Juhos, "HLA typing from 1000 genomes whole genome and whole exome illumina data, " PLoS ONE, vol. 8, no. 11, Article ID e78410, 2013.
    • (2013) PLoS ONE , vol.8 , Issue.11
    • Major, E.1    Rigó, K.2    Hague, T.3    Bérces, A.4    Juhos, S.5
  • 80
    • 77952888454 scopus 로고    scopus 로고
    • Genomewide association study meta-analysis identifies seven new rheumatoid arthritis risk loci
    • E. A. Stahl, S. Raychaudhuri, E. F. Remmers, et al., "Genomewide association study meta-analysis identifies seven new rheumatoid arthritis risk loci, " Nature Genetics, vol. 42, pp. 508-514, 2010.
    • (2010) Nature Genetics , vol.42 , pp. 508-514
    • Stahl, E.A.1    Raychaudhuri, S.2    Remmers, E.F.3
  • 81
    • 84887116043 scopus 로고    scopus 로고
    • Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogrens syndrome
    • C. J. Lessard, H. Li, I. Adrianto, et al., "Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjogrens syndrome, " Nature Genetics, vol. 45, pp. 1284-1292, 2013.
    • (2013) Nature Genetics , vol.45 , pp. 1284-1292
    • Lessard, C.J.1    Li, H.2    Adrianto, I.3
  • 82
    • 84862776511 scopus 로고    scopus 로고
    • Five amino acids in three HLA proteins explain most of the association between MHC and seropositive rheumatoid arthritis
    • S. Raychaudhuri, C. Sandor, E. A. Stahl, et al., "Five amino acids in three HLA proteins explain most of the association between MHC and seropositive rheumatoid arthritis, " Nature Genetics, vol. 44, no. 3, pp. 291-296, 2012.
    • (2012) Nature Genetics , vol.44 , Issue.3 , pp. 291-296
    • Raychaudhuri, S.1    Sandor, C.2    Stahl, E.A.3
  • 83
    • 79959412801 scopus 로고    scopus 로고
    • Pervasive haplotypic variation in the spliceo-transcriptome of the human major histocompatibility complex
    • C. Vandiedonck, M. S. Taylor, H. E. Lockstone, et al., "Pervasive haplotypic variation in the spliceo-transcriptome of the human major histocompatibility complex, " Genome Research, vol. 21, no. 7, pp. 1042-1054, 2011.
    • (2011) Genome Research , vol.21 , Issue.7 , pp. 1042-1054
    • Vandiedonck, C.1    Taylor, M.S.2    Lockstone, H.E.3
  • 84
    • 77952367694 scopus 로고    scopus 로고
    • Candidate causal regulatory effects by integration of expression QTLs with complex trait genetic associations
    • Article ID e1000895
    • A. C. Nica, S. B. Montgomery, A. S. Dimas, et al., "Candidate causal regulatory effects by integration of expression QTLs with complex trait genetic associations, " PLoS Genetics, vol. 6, no. 4, Article ID e1000895, 2010.
    • (2010) PLoS Genetics , vol.6 , Issue.4
    • Nica, A.C.1    Montgomery, S.B.2    Dimas, A.S.3
  • 85
    • 84871400212 scopus 로고    scopus 로고
    • HLA typing from RNAseq sequence reads
    • article 102
    • S. Boegel, M. Löwer, and M. Schäfer, "HLA typing from RNAseq sequence reads, " Genome Medicine, vol. 4, article 102, 2013.
    • (2013) Genome Medicine , vol.4
    • Boegel, S.1    Löwer, M.2    Schäfer, M.3


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