The effect of storage and extraction methods on amplification of plasmodium falciparum DNA from dried blood spots

American Journal of Tropical Medicine and Hygiene

Volumn 92, Issue 5, 2015, Pages 922-925

  Schwartz, Alanna ^a   Baidjoe, Amrish ^b   Rosenthal, Philip J ^a   Dorsey, Grant ^a   Bousema, Teun ^c   Greenhouse, Bryan ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b RADBOUD UNIVERSITY MEDICAL CENTER   (Netherlands)

^c LONDON SCHOOL OF HYGIENE AND TROPICAL MEDICINE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIMALARIAL AGENT; CHELEX; PROTOZOAL DNA; REAGENT; SAPONIN; UNCLASSIFIED DRUG;

ACCELERATION; ARTICLE; BLOOD SAMPLING; BLOOD SMEAR; CLINICAL TRIAL (TOPIC); CONTROLLED STUDY; DNA EXTRACTION; DRIED BLOOD SPOT TESTING; DRUG EFFICACY; ENVIRONMENTAL TEMPERATURE; FREEZE THAWING; GENE AMPLIFICATION; HUMAN; LABORATORY; PARASITE; PARASITEMIA; PLASMODIUM FALCIPARUM; POLYMERASE CHAIN REACTION; POPULATION DENSITY; SENSITIVITY ANALYSIS; STORAGE; STORAGE TEMPERATURE; BLOOD; FREEZING; GENETICS; ISOLATION AND PURIFICATION; MALARIA, FALCIPARUM; PARASITOLOGY; PROCEDURES; SENSITIVITY AND SPECIFICITY; SPECIMEN HANDLING; STANDARDS; STATISTICAL MODEL; TEMPERATURE; TIME FACTOR;

PLASMODIUM FALCIPARUM;

DNA, PROTOZOAN; FREEZING; MALARIA, FALCIPARUM; MODELS, STATISTICAL; PLASMODIUM FALCIPARUM; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SPECIMEN HANDLING; TEMPERATURE; TIME FACTORS;

EID: 84929093553     PISSN: 00029637     EISSN: 14761645     Source Type: Journal    
DOI: 10.4269/ajtmh.14-0602     Document Type: Article

References (15)

1. Baidjoe A, Stone W, Ploemen I, Shagari S, Grignard L, Osoti V, Makori E, Stevenson J, Kariuki S, Sutherland C, Sauerwein R, Cox J, Drakeley C, Bousema T, 2013. Combined DNA extraction and antibody elution from filter papers for the assessment of malaria transmission intensity in epidemiological studies. Malar J 12: 272.
2. Jones S, Sutherland CJ, Hermsen C, Arens T, Teelen K, Hallett R, Corran P, van der Vegte-Bolmer M, Sauerwein R, Drakeley CJ, Bousema T, 2012. Filter paper collection of Plasmodium falciparum mRNA for detecting low-density gametocytes. Malar J 11: 266.
3. Bereczky S, Mårtensson A, Gil JP, Färnert A, 2005. Short report: rapid DNA extraction from archive blood spots on filter paper for genotyping of Plasmodium falciparum. Am J Trop Med Hyg 72: 249-251.
4. Proux S, Suwanarusk R, Barends M, Zwang J, Price RN, Leimanis M, Kiricharoen L, Laochan N, Russell B, Nosten F, Snounou G, 2011. Considerations on the use of nucleic acid-based amplification for malaria parasite detection. Malar J 10: 323.
5. Jensen JB, 2002. In vitro culture of Plasmodium parasites. Methods Mol Med 72: 477-488.
6. Achan J, Kakuru A, Ikilezi G, Ruel T, Clark TD, Nsanzabana C, Charlebois E, Aweeka F, Dorsey G, Rosenthal PJ, Havlir D, Kamya MR, 2012. Antiretroviral agents and prevention of malaria in HIV-infected Ugandan children. N Engl J Med 367: 2110-2118.
7. Clark TD, Njama-Meya D, Nzarubara B, Maiteki-Sebuguzi C, Greenhouse B, Staedke SG, Kamya MR, Dorsey G, Rosenthal PJ, 2010. Incidence of malaria and efficacy of combination anti-malarial therapies over 4 years in an urban cohort of Ugandan children. PLoS ONE 5: e11759.
8. Dorsey G, Njama D, Kamya MR, Cattamanchi A, Kyabayinze D, Staedke SG, Gasasira A, Rosenthal PJ, 2002. Sulfadoxine/pyrimethamine alone or with amodiaquine or artesunate for treatment of uncomplicated malaria: a longitudinal randomised trial. Lancet 360: 2031-2038.
9. Plowe CV, Djimde A, Bouare M, Doumbo O, Wellems TE, 1995. Pyrimethamine and proguanil resistance-conferring mutations in Plasmodium falciparum dihydrofolate reductase: polymerase chain reaction methods for surveillance in Africa. Am J Trop Med Hyg 52: 565-568.
10. Hsiang MS, Lin M, Dokomajilar C, Kemere J, Pilcher CD, Dorsey G, Greenhouse B, 2010. PCR-based pooling of dried blood spots for detection of malaria parasites: optimization and application to a cohort of Ugandan children. J Clin Microbiol 48: 3539-3543.
11. Anderson TJC, Haubold B, Williams JT, Estrada-Franco JG, Richardson L, Mollinedo R, Bockarie M, Mokili J, Mharakurwa S, French N, Whitworth J, Velez ID, Brockman AH, Nosten F, Ferreira MU, Day KP, 2000. Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum. Mol Biol Evol 17: 1467-1482.
12. Hwang J, Jaroensuk J, Leimanis ML, Russell B, McGready R, Day N, Snounou G, Nosten F, Imwong M, 2012. Long-term storage limits PCR-based analyses of malaria parasites in archival dried blood spots. Malar J 11: 339.
13. Chaorattanakawee S, Natalang O, Hananantachai H, Nacher M, Brockman A, Krudsood S, Looareesuwan S, Patarapotikul J, 2003. Storage duration and polymerase chain reaction detection of Plasmodium falciparum from blood spots on filter paper. Am J Trop Med Hyg 69: 42-44.
14. Corran PH, Cook J, Lynch C, Leendertse H, Manjurano A, Griffin J, Cox J, Abeku T, Bousema T, Ghani AC, Drakeley C, Riley E, 2008. Dried blood spots as a source of anti-malarial antibodies for epidemiological studies. Malar J 7: 195.
15. Arinaitwe E, Ades V, Walakira A, Ninsiima B, Mugagga O, Patil TS, Schwartz A, Kamya MR, Nasr S, Chang M, Filler S, Dorsey G, 2013. Intermittent preventive therapy with sulfadoxine-pyrimethamine for malaria in pregnancy: a cross-sectional study from Tororo, Uganda. PLoS ONE 8: e73073.