Genetic mapping of resistance to Fusarium oxysporum f. sp. tulipae in tulip

Molecular Breeding

Volumn 35, Issue 5, 2015, Pages 1-17

  Tang, Nan ^a,b   van der Lee, Theo ^a   Shahin, Arwa ^a,d   Holdinga, Maarten ^a   Bijman, Paul ^a   Caser, Matteo ^c   Visser, Richard G F ^a   van Tuyl, Jaap M ^a   Arens, Paul ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b QINGHAI UNIVERSITY   (China)

^c UNIVERSITY OF TURIN   (Italy)

^d DAMASCUS UNIVERSITY   (Syrian Arab Republic)

Author keywords

Fungal disease; Genetic map; Green fluorescent protein (GFP); Quantitative trait; SNP; Tulipa

Indexed keywords

FUNGI; LIFE CYCLE; MAPPING; PROTEINS;

FUNGAL DISEASE; FUSARIUM; FUSARIUM OXYSPORUMS; GENETIC MAP; GREEN FLUORESCENT PROTEIN; MARKER-ASSISTED SELECTION; QUANTITATIVE TRAITS; SNP; TULIPA;

FLUORESCENCE;

FUSARIUM; FUSARIUM OXYSPORUM; FUSARIUM OXYSPORUM F. SP. TULIPAE; TULIPA; TULIPA FOSTERIANA; TULIPA GESNERIANA;

EID: 84928954262     PISSN: 13803743     EISSN: 15729788     Source Type: Journal    
DOI: 10.1007/s11032-015-0316-3     Document Type: Article

References (60)

1. Abe H, Nakano M, Nakatsuka A, Nakayama M, Koshioka M, Yamagishi M (2002) Genetic analysis of floral anthocyanin pigmentation traits in Asiatic hybrid lily using molecular linkage maps. Theor Appl Genet 105:1175–1182
2. Acquah WE, Quain DM, Twumasi P (2011) Genetic relationships between some released and elite Ghanaian cassava cultivars based on distance matrices. Afr J Biotechnol 10:913–921
3. Alwala S, Kimbeng CA, Veremis JC, Gravois KA (2008) Linkage mapping and genome analysis in a Saccharum interspecific cross using AFLP, SRAP and TRAP markers. Euphytica 164:37–51
4. Botschantzeva ZP (1982) Tulips: taxonomy, morphology, cytology, phytogeography and physiology. Balkema, Rotterdam
5. Buron-Moles G, López-Pérez M, González-Candelas L, Viñas I, Teixidó N, Usall J, Torres R (2012) Use of GFP-tagged strains of Penicillium digitatum and Penicillium expansum to study host-pathogen interactions in oranges and apples. Int J Food Microbiol 160:162–170
6. Caser M, Scariot V, Arens P (2010) Consequences of geographical habitats on population structure and genetic diversity in Campanula spp. Int J Plant Biol 1:22–29
7. Cerveny CB, Miller WB (2010) Residual effects of ethylene on tulip growth and flowering. HortScience 45:1164–1166
8. Chalfie M, Tu Y, Euskirchen G, Ward WW, Prasher DC (1994) Green fluorescent protein as a marker for gene-expression. Science 263:802–805
9. Chen N, Hsiang T, Goodwin PH (2003) Use of green fluorescent protein to quantify the growth of Colletotrichum during infection of tobacco. J Microbiol Methods 53:113–122
10. Choi JK, Na DY, Kim D, Shin IS, Kim MY, Lee HJ (2010) Genetic linkage mapping using interspecific hybrid population between Korean wild pear (Pyrus ussuriensis) and Japanese pear (P. pyrifolia). Hortic Environ Biotechnol 51:319–325
11. de la Pena RC, Smith KP, Capettini F, Muehlbauer GJ, Gallo-Meagher M, Dill-Macky R, Somers DA, Rasmusson DC (1999) Quantitative trait loci associated with resistance to Fusarium head blight and kernel discoloration in barley. Theor Appl Genet 99:561–569
12. Diener AC, Ausubel FM (2005) Resistance to Fusarium oxysporum 1, a dominant Arabidopsis disease—resistance gene, is not a race specific. Genetics 171:305–321
13. Dokku P, Das KM, Rao GJN (2013) Pyramiding of four resistance genes of bacterial blight in Tapaswini, an elite rice cultivar, through marker-assisted selection. Euphytica 192:87–96
14. Foolad MR, Panthee DR (2013) Marker-assisted selection in tomato breeding. Crit Rev Plant Sci 32:483
15. Gerardo SJ, Miller WB, Bergstrom GC (2007) Ethylene production by Fusarium oxysporum f. sp tulipae in live bulbs, and in vitro using freeze dried tulip bulb powder. HortScience 42:890
16. Gervais L, Dedryver F, Morlais JY, Bodusseau V, Negre S, Bilous M, Groos C, Trottet M (2003) Mapping of quantitative trait loci for field resistance to Fusarium head blight in an European winter wheat. Theor Appl Genet 106:961–970
17. Grattapaglia D, Sederoff R (1994) Genetic linkage maps of Eucalyptus Grandis and Eucalyptus Urophylla using a pseudo testcross—mapping strategy and RAPD markers. Genetics 137:1121–1137
18. Hanley S, Barker JHA, Van Ooijen JW, Aldam C, Harris SL, Ahman I, Larsson S, Karp A (2002) A genetic linkage map of willow (Salix viminalis) based on AFLP and microsatellite markers. Theor Appl Genet 105:1087–1096
19. He D, Liu Y, Cai M, Pan H, Zhang Q (2014) The first genetic linkage map of crape myrtle (Lagerstroemia) based on amplification fragment length polymorphisms and simple sequence repeats markers. Plant Breeding 133:138–144
20. Horowitz S, Freeman S, Sharon A (2002) Use of green fluorescent protein-transgenic strains to study pathogenic and nonpathogenic lifestyles in Colletotrichu macutatum. Phytopathology 92:743–749
21. Hulbert SH, Ilott TW, Legg EJ, Lincoln SE, Lander ES, Michelmore RW (1988) Genetic analysis of the fungus, Bremia lactucae, using restriction fragment length polymorphisms. Genetics 120:947–958
22. Ipek M, Ipek A, Almquist SG, Simon PW (2005) Demonstration of linkage and development of the first low-density genetic map of garlic, based on AFLP markers. Theor Appl Genet 110:228–236
23. Kamerbeek GA (1975) Physiology of ethylene production by Fusarium and possible consequences in host-parasite relation in tulip bulbs. Ann Appl Biol 81:126
24. Kanneworff WA, Van der Plas LHW (1994) Ethylene formation and the effects of ethylene on respiration in tulip bulbs. J Plant Physiol 143:200–206
25. Lagopodi AL, Ram AFJ, Lamers GEM, Punt PJ, van den Hondel C, Lugtenberg BJJ, Bloemberg GV (2002) Novel aspects of tomato root colonization and infection by Fusarium oxysporum f. sp radicis-lycopersici revealed by confocal laser scanning microscopic analysis using the green fluorescent protein as a marker. Mol Plant Microbe Interact 15:172–179
26. Li CY, Chen S, Zuo CW, Sun QM, Ye Q, Yi GJ, Huang BZ (2011) The use of GFP-transformed isolates to study infection of banana with Fusarium oxysporum f. sp cubense race 4. Eur J Plant Pathol 131:327–340
27. Li L, Tacke E, Hofferbert HR, Lubeck J, Strahwald J, Draffehn AM, Walkemeier B, Gebhardt C (2013) Validation of candidate gene markers for marker-assisted selection of potato cultivars with improved tuber quality. Theor Appl Genet 126:1039–1052
28. Löffler HJM, Straathof TP, Mouris JR, Baayen RP (1995) Durability of resistance in lily to basal rot: evaluation of virulence and aggressiveness among isolates of Fusarium oxysporum f. sp. lilii. Eur J Plant Pathol 101:261–271
29. Maor R, Puyesky M, Horwitz BA, Sharon A (1998) Use of green fluorescent protein (GFP) for studying development and fungal-plant interaction in Cochliobolus heterostrophus. Mycol Res 102:491–496
30. Marasek-Ciolakowska A, He H, Bijman P, Ramanna MS, Arens P, van Tuyl JM (2012) Assessment of intergenomic recombination through GISH analysis of F1, BC1 and BC2 progenies of Tulipa gesneriana and T. fosteriana. Plant Syst Evol 298:887–899
31. Matsumoto Y, Miyagi M (2012) A single dominant gene confers resistance to Fusarium oxysporum f. sp melonis race 1 in West Indian Gherkin (Cucumis anguria L.) accessions. S Afr J Botany 83:117–120
32. Miller WB, Verlouw M, Lion SS, Cirri HO, Snover-Clift K, Watkins C (2004) Variation in Fusarium-induced ethylene synthesis among tulip cultivars. HortScience 39:893
33. Netzer D, Niego S, Galun E (1977) Dominant gene conferring resistance to Fusarium wilt in cucumber. Phytopathology 67:525–527
34. Roman-Aviles B, Kelly JD (2005) Identification of quantitative trait loci conditioning resistance to Fusarium root rot in common bean. Crop Sci 45:1881–1890
35. Sarfatti M, Katan J, Fluhr R, Zamir D (1989) An RFLP marker in tomato linked to the Fusarium oxysporum resistance gene I2. Theor Appl Genet 78:755–759
36. Scott JW, Agrama HA, Jones JP (2004) RFLP-based analysis of recombination among resistance genes to Fusarium wilt races 1, 2, and 3 in tomato. J Am Soc Hortic Sci 129:394–400
37. Shahin EA, Spivey R (1986) A single dominant gene for Fusarium wilt resistance in protoplast-derived tomato plants. Theor Appl Genet 73:164–169
38. Shahin A, Arens P, van Heusden AW, van der Linden G, van Kaauwen M, Khan N, Schouten HJ, van de Weg WE, Visser RGF, van Tuyl JM (2011) Genetic mapping in Lilium: mapping of major genes and quantitative trait loci for several ornamental traits and disease resistances. Plant Breed 130:372–382
39. Shahin A, van Kaauwen M, Esselink D, Bargsten JW, van Tuyl JM, Visser RGF, Arens P (2012) Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa. BMC Genom 13:640
40. Spielmeyer W, Green AG, Bittisnich D, Mendham N, Lagudah ES (1998) Identification of quantitative trait loci contributing to Fusarium wilt resistance on an AFLP linkage map of flax (Linum usitatissimum). Theor Appl Genet 97:633–641
41. Spiller M, Linde M, Hibrand-Saint Oyant L, Tsai C-J, Byrne D, Smulders MM, Foucher F, Debener T (2011) Towards a unified genetic map for diploid roses. Theor Appl Genet 122:489–500
42. Tang N, Shahin A, Bijman P, Liu J, van Tuyl J, Arens P (2013) Genetic diversity and structure in a collection of tulip cultivars assessed by SNP markers. Sci Hortic 161:286–292
43. Tanksley SD, Ganal MW, Prince JP, Devicente MC, Bonierbale MW, Broun P, Fulton TM, Giovannoni JJ, Grandillo S, Martin GB, Messeguer R, Miller JC, Miller L, Paterson AH, Pineda O, Roder MS, Wing RA, Wu W, Young ND (1992) High-density molecular linkage maps of the tomato and potato genomes. Genetics 132:1141–1160
44. Tukey JW (1977) Exploratory data analysis. Addison-Wesley Publishing Company, Reading
45. Valdivia RH, Hromockyj AE, Monack D, Ramakrishnan L, Falkow S (1996) Applications for green fluorescent protein (GFP) in the study of host-pathogen interactions. Gene 173:47–52
46. van Eijk JP, Bergman BHH, Eikelboom W (1978) Breeding for resistance to Fusarium Oxysporum f.sp. Tulipae in Tulip (Tulipa L). 1. Development of a screening test for selection. Euphytica 27:441–446
47. van Eijk JP, Garretsen F, Eikelboom W (1979) Breeding for resistance to Fusarium oxysporum f.sp. tulipae in tulip (Tulipa L.). 2. Phenotypic and genotypic evaluation of cultivars. Euphytica 28:67–71
48. van Heusden AW, van Ooijen JW, Vrielink-van Ginkel R, Verbeek WHJ, Wietsma WA, Kik C (2000) A genetic map of an interspecific cross in Allium based on amplified fragment length polymorphism (AFLP™) markers. Theor Appl Genet 100:118–126
49. van Heusden AW, Jongerius MC, van Tuyl JM, Straathof TP, Mes JJ (2002) Molecular assisted breeding for disease resistance in lily. Acta Hortic 572:131–138
50. van Loon LC, Geraats BPJ, Linthorst HJM (2006) Ethylene as a modulator of disease resistance in plants. Trends Plant Sci 11:184–191
51. van Ooijen JW (1999) LOD significance thresholds for QTL analysis in experimental populations of diploid species. Heredity 83:613–624
52. ® 6, Software for the mapping of quantitative trait loci in experimental populations of diploid species. Kyazma B. V. Wageningen, The Netherlands
53. van Ooijen JW (2011) Multipoint maximum likelihood mapping in a full-sib family of an outbreeding species. Genetics Res 93:343–349
54. van Tuyl JM, van Creij MGM (2006) Tulip. Flower Breeding and Genetics. Springer, Netherlands, pp 623–641
55. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407–4414
56. Weber CA, Moore GA, Deng Z, Gmitter FG (2003) Mapping freeze tolerance quantitative trait loci in a Citrus grandis x Poncirus trifoliata F1 pseudo-testcross using molecular markers. J Am Soc Hortic Sci 128:508–514
57. Yang LQ, Wang W, Yang WP, Wang MC (2013) Marker-assisted selection for pyramiding the waxy and opaque-16 genes in maize using cross and backcross schemes. Mol Breed 31:767–775
58. Zhang T, Yuan Y, Yu J, Guo W, Kohel RJ (2003) Molecular tagging of a major QTL for fiber strength in Upland cotton and its marker-assisted selection. Theor Appl Genet 106:262–268
59. Zhang X, van De Lee T, Dufresne M, Liu TG, Lu WZ, Yu DZ, Ma HX (2008) Infection of green fluorescence protein-tagged Fusarium graminearum on wheat and barley spikes. Cereal Res Commun 36:465–469
60. Zonneveld BM (2009) The systematic value of nuclear genome size for “all” species of Tulipa L. (Liliaceae) Plant Syst Evol 281:217–245