Influenza and other respiratory viruses detected by influenza-like illness surveillance in Leyte Island, the Philippines, 2010-2013

PLoS ONE

Volumn 10, Issue 4, 2015, Pages

  Otomaru, Hirono ^a   Kamigaki, Taro ^a   Tamaki, Raita ^a   Opinion, Jamie ^b   Santo, Arlene ^c   Daya, Edgard ^d   Okamoto, Michiko ^a   Saito, Mariko ^a,e   Tallo, Veronica ^f   Lupisan, Soccoro ^f   Suzuki, Akira ^g,h   Oshitani, Hitoshi ^a  

^a TOHOKU UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^b Tacloban City Health Office   (Philippines)

^c Tanauan Rural Health Unit   (Philippines)

^d Leyte Provincial Health Office   (Philippines)

^e Tohoku RITM Research Center for Emerging and Reemerging Infections   (Philippines)

^f RESEARCH INSTITUTE FOR TROPICAL MEDICINE   (Philippines)

^g SENDAI CITY MEDICAL CENTER   (Japan)

^h TOHOKU UNIVERSITY GRADUATE SCHOOL OF MEDICINE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ADOLESCENT; ADULT; AGE DISTRIBUTION; ANIMAL CELL; ARTICLE; CHILD; CONTROLLED STUDY; COUGHING; CYTOMEGALOVIRUS; DISEASE SURVEILLANCE; EMBRYO; ENTEROVIRUS; FEMALE; FEVER; FLU LIKE SYNDROME; HEADACHE; HERPESVIRIDAE; HUMAN; HUMAN ADENOVIRUS C; HUMAN CELL; HUMAN METAPNEUMOVIRUS; HUMAN RESPIRATORY SYNCYTIAL VIRUS; HUMAN RHINOVIRUS; INFANT; INFLUENZA VIRUS; INFLUENZA VIRUS A; INFLUENZA VIRUS A H1N1; INFLUENZA VIRUS A H3N2; INFLUENZA VIRUS B; INFLUENZA VIRUS C; MAJOR CLINICAL STUDY; MALE; NONHUMAN; PHILIPPINES; RESPIRATORY VIRUS; RHINORRHEA; SORE THROAT; VIRUS DETECTION; DEMOGRAPHY; GEOGRAPHY; HEALTH SURVEY; INFLUENZA, HUMAN; ISLAND (GEOLOGICAL); NEWBORN; ORTHOMYXOVIRIDAE; PHYSIOLOGY; PNEUMOVIRUS; PRESCHOOL CHILD; VIROLOGY; YOUNG ADULT;

HUMAN RHINOVIRUS SP.; ORTHOMYXOVIRIDAE; RESPIRATORY SYNCYTIAL VIRUS; RICE STRIPE VIRUS;

ADOLESCENT; ADULT; CHILD; CHILD, PRESCHOOL; DEMOGRAPHY; FEMALE; GEOGRAPHY; HUMANS; INFANT; INFANT, NEWBORN; INFLUENZA, HUMAN; ISLANDS; MALE; ORTHOMYXOVIRIDAE; PHILIPPINES; PNEUMOVIRUS; POPULATION SURVEILLANCE; YOUNG ADULT;

EID: 84928902610     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0123755     Document Type: Article

References (43)

1. World Health Organization. Influenza Fact sheet no.211. Available: http://www.who.int/mediacentre/factsheets/fs211/en/
2. Ip DK, Liao Q, Wu P, Gao Z, Cao B, Feng L, et al. Detection of mild to moderate influenza A/H7N9 infection by China's national sentinel surveillance system for influenza-like illness: case series. BMJ. 2013; 346: f3693. doi: 10.1136/bmj.f3693 PMID: 23798720
3. Chen SY, Chen YC, Chiang WC, Kung HC, King CC, Lai MS, et al. Field performance of clinical case definitions for influenza screening during the 2009 pandemic. Am J Emerg Med. 2012; 30: 1796-1803. doi: 10.1016/j.ajem.2012.02.016 PMID: 22633701
4. Monto AS, Gravenstein S, Elliott M, Colopy M, Schweinle J. Clinical signs and symptoms predicting influenza infection. Arch Intern Med. 2000; 160: 3243-3247. PMID: 11088084
5. Navarro-Mari JM, Perez-Ruiz M, Cantudo-Munoz P, Petit-Gancedo C, Jimenez-Valera M, Rosa-Fraile M. Influenza-like illness criteria were poorly related to laboratory-confirmed influenza in a sentinel surveillance study. J Clin Epidemiol. 2005; 58: 275-279. PMID: 15768487
6. Azziz-Baumgartner E, Alamgir AS, Rahman M, Homaira N, Sohel BM, Sharker MA, et al. Incidence of influenza-like illness and severe acute respiratory infection during three influenza seasons in Bangladesh, 2008-2010. Bull World Health Organ. 2012; 90: 12-19. doi: 10.2471/BLT.11.090209 PMID: 22271960
7. Nguyen YT, Graitcer SB, Nguyen TH, Tran DN, Pham TD, Le MT, et al. National surveillance for influenza and influenza-like illness in Vietnam, 2006-2010. Vaccine. 2013; 31: 4368-4374. doi: 10.1016/j.vaccine.2013.07.018 PMID: 23911781
8. Huo X, Qin Y, Qi X, Zu R, Tang F, Li L, et al. Surveillance of 16 respiratory viruses in patients with influenza-like illness in Nanjing, China. J Med Virol. 2012; 84: 1980-1984. doi: 10.1002/jmv.23401 PMID: 23080506
9. Kadjo HA, Ekaza E, Coulibaly D, Kouassi DP, Nzussouo NT, Kouakou B, et al. Sentinel surveillance for influenza and other respiratory viruses in Cote d'Ivoire, 2003-2010. Influenza Other Respir Viruses. 2013; 7: 296-303. doi: 10.1111/j.1750-2659.2012.00389.x PMID: 22863403
10. Mmbaga VM, Mwasekaga MJ, Mmbuji P, Matonya M, Mwafulango A, Moshi S, et al. Results from the first 30 months of national sentinel surveillance for influenza in Tanzania, 2008-2010. J Infect Dis. 2012; 206 Suppl 1: S80-86. doi: 10.1093/infdis/jis540 PMID: 23169977
11. Viboud C, Alonso WJ, Simonsen L. Influenza in tropical regions. PLOS Med. 2006; 3: e89. PMID: 16509764
12. Tallo VL, Kamigaki T, Tan AG, Pamaran RR, Alday PP, Mercado ES, et al. Estimating influenza outpatients' and inpatients' incidences from 2009 to 2011 in a tropical urban setting in the Philippines. Influenza Other Respir Viruses. 2014; 8: 159-168. doi: 10.1111/irv.12223 PMID: 24393336
13. National Statistical Office. The 2010 Census of Population and Housing. Available: http://www.census.gov.ph/sites/default/files/attachments/hsd/pressrelease/Eastern%20Visayas.pdf
14. World Health Organization. WHO recommended surveillance standards, Second edition. Available: http://www.who.int/csr/resources/publications/surveillance/WHO-CDS-CSR-ISR-99-2-EN/en/
15. World Health Organization. CDC protocol of realtime RTPCR for swine influenza A (H1N1). Available: http://www.who.int/csr/resources/publications/swineflu/realtimeptpcr/en/
16. Furuse Y, Odagiri T, Okada T, Khandaker I, Shimabukuro K, Sawayama R, et al. Differentiation of human influenza A viruses including the pandemic subtype H1N1/2009 by conventional multiplex PCR. J Virol Methods. 2010; 168: 94-97. doi: 10.1016/j.jviromet.2010.04.023 PMID: 20447424
17. Kiang D, Kalra I, Yagi S, Louie JK, Boushey H, Boothby J, et al. Assay for 5′ noncoding region analysis of all human rhinovirus prototype strains. J Clin Microbiol. 2008; 46: 3736-3745. doi: 10.1128/JCM.00674-08 PMID: 18753359
18. Casas I, Avellon A, Mosquera M, Jabado O, Echevarria JE, Campos RH, et al. Molecular identification of adenoviruses in clinical samples by analyzing a partial hexon genomic region. J Clin Microbiol. 2005; 43: 6176-6182. PMID: 16333124
19. Bellau-Pujol S, Vabret A, Legrand L, Dina J, Gouarin S, Petitjean-Lecherbonnier J, et al. Development of three multiplex RT-PCR assays for the detection of 12 respiratory RNA viruses. J Virol Methods. 2005; 126: 53-63. PMID: 15847919
20. Bonroy C, Vankeerberghen A, Boel A, De Beenhouwer H. Use of a multiplex real-time PCR to study the incidence of human metapneumovirus and human respiratory syncytial virus infections during two winter seasons in a Belgian paediatric hospital. Clin Microbiol Infect. 2007; 13: 504-509. PMID: 17263836
21. Matsuzaki Y, Takashita E, Okamoto M, Mizuta K, Itagaki T, Katsushima F, et al. Evaluation of a new rapid antigen test using immunochromatography for detection of human metapneumovirus in comparison with real-time PCR assay. J Clin Microbiol. 2009; 47: 2981-2984. doi: 10.1128/JCM.00321-09 PMID: 19571031
22. Numazaki Y, Oshima T, Ohmi A, Tanaka A, Oizumi Y, Komatsu S, et al. A microplate method for isolation of viruses from infants and children with acute respiratory infections. Microbiol Immunol. 1987; 31: 1085-1095. PMID: 3444424
23. Mizuta K, Abiko C, Goto H, Murata T, Murayama S. Enterovirus isolation from children with acute respiratory infections and presumptive identification by a modified microplate method. Int J Infect Dis. 2003; 7: 138-142. PMID: 12839716
24. Mizuta K, Abiko C, Aoki Y, Suto A, Hoshina H, Itagaki T, et al. Analysis of monthly isolation of respiratory viruses from children by cell culture using a microplate method: a two-year study from 2004 to 2005 in yamagata, Japan. Jpn J Infect Dis. 2008; 61: 196-201. PMID: 18503168
25. World Health Organization. WHO Interim Global Epidemiological Surveillance Standards for Influenza (July 2012). Available: http://www.who.int/influenza/resources/documents/INFSURVMANUAL.pdf
26. Zaman RU, Alamgir AS, Rahman M, Azziz-Baumgartner E, Gurley ES, Sharker MA, et al. Influenza in outpatient ILI case-patients in national hospital-based surveillance, Bangladesh, 2007-2008. PLOS One. 2009; 4: e8452. doi: 10.1371/journal.pone.0008452 PMID: 20041114
27. Njouom R, Yekwa EL, Cappy P, Vabret A, Boisier P, Rousset D. Viral etiology of influenza-like illnesses in Cameroon, January-December 2009. J Infect Dis. 2012; 206 Suppl 1: S29-35. doi: 10.1093/infdis/jis573 PMID: 23169968
28. Landes MB, Neil RB, McCool SS, Mason BP, Woron AM, Garman RL, et al. The frequency and seasonality of influenza and other respiratory viruses in Tennessee: two influenza seasons of surveillance data, 2010-2012. Influenza Other Respir Viruses. 2013; 7: 1122-1127. doi: 10.1111/irv.12145 PMID: 23962104
29. Kono J, Jonduo MH, Omena M, Siba PM, Horwood PF. Viruses associated with influenza-like-illnesses in Papua New Guinea, 2010. J Med Virol. 2014; 86: 899-904. doi: 10.1002/jmv.23786 PMID: 24136362
30. Hombrouck A, Sabbe M, Van Casteren V, Wuillaume F, Hue D, Reynders M, et al. Viral aetiology of influenza-like illness in Belgium during the influenza A(H1N1)2009 pandemic. Eur J Clin Microbiol Infect Dis. 2012; 31: 999-1007. doi: 10.1007/s10096-011-1398-4 PMID: 21901635
31. Galindo-Fraga A, Ortiz-Hernandez AA, Ramirez-Venegas A, Vazquez RV, Moreno-Espinosa S, Llamosas-Gallardo B, et al. Clinical characteristics and outcomes of influenza and other influenza-like illnesses in Mexico City. Int J Infect Dis. 2013; 17: e510-517. doi: 10.1016/j.ijid.2013.01.006 PMID: 23416208
32. Suzuki A, Lupisan S, Furuse Y, Fuji N, Saito M, Tamaki R, et al. Respiratory viruses from hospitalized children with severe pneumonia in the Philippines. BMC Infect Dis. 2012; 12: 267. doi: 10.1186/1471-2334-12-267 PMID: 23092190
33. Mizuta K, Abiko C, Aoki Y, Ikeda T, Matsuzaki Y, Itagaki T, et al. Seasonal patterns of respiratory syncytial virus, influenza A virus, human metapneumovirus, and parainfluenza virus type 3 infections on the basis of virus isolation data between 2004 and 2011 in Yamagata, Japan. Jpn J Infect Dis. 2013; 66: 140-145. PMID: 23514911
34. Shafik CF, Mohareb EW, Yassin AS, Amin MA, El Kholy A, El-Karaksy H, et al. Viral etiologies of lower respiratory tract infections among Egyptian children under five years of age. BMC Infect Dis. 2012; 12: 350. doi: 10.1186/1471-2334-12-350 PMID: 23237512
35. Peng J, Kong W, Guo D, Liu M, Wang Y, Zhu H, et al. The epidemiology and etiology of influenza-like illness in Chinese children from 2008 to 2010. J Med Virol. 2012; 84: 672-678. doi: 10.1002/jmv.22247 PMID: 22337308
36. Peltola V, Reunanen T, Ziegler T, Silvennoinen H, Heikkinen T. Accuracy of clinical diagnosis of influenza in outpatient children. Clin Infect Dis. 2005; 41: 1198-1200. PMID: 16163640
37. Yang TU, Cheong HJ, Song JY, Lee JS, Wie SH, Kim YK, et al. Age- and influenza activity-stratified case definitions of influenza-like illness: experience from hospital-based influenza surveillance in South Korea. PLOS One. 2014; 9: e84873. doi: 10.1371/journal.pone.0084873 PMID: 24475034
38. Silvennoinen H, Peltola V, Lehtinen P, Vainionpaa R, Heikkinen T. Clinical presentation of influenza in unselected children treated as outpatients. Pediatr Infect Dis J. 2009; 28: 372-375. doi: 10.1097/INF.0b013e318191eef7 PMID: 19295464
39. Mak GC, Wong AH, Ho WY, Lim W. The impact of pandemic influenza A (H1N1) 2009 on the circulation of respiratory viruses 2009-2011. Influenza Other Respir Viruses. 2012; 6: e6-10. doi: 10.1111/j.1750-2659.2011.00323.x PMID: 22212717
40. Western Pacific Region Global Influenza Surveillance and Response System Epidemiological and virological characteristics of influenza in the Western Pacific Region of the World Health Organization, 2006-2010. PLOS One. 2012; 7: e37568. doi: 10.1371/journal.pone.0037568 PMID: 22675427
41. Nishimura N, Nishio H, Lee MJ, Uemura K. The clinical features of respiratory syncytial virus: lower respiratory tract infection after upper respiratory tract infection due to influenza virus. Pediatr Int. 2005; 47: 412-416. PMID: 16091079
42. Nicholson KG, McNally T, Silverman M, Simons P, Stockton JD, Zambon MC. Rates of hospitalisation for influenza, respiratory syncytial virus and human metapneumovirus among infants and young children. Vaccine. 2006; 24: 102-108. PMID: 16310899
43. Wolf DG, Greenberg D, Shemer-Avni Y, Givon-Lavi N, Bar-Ziv J, Dagan R. Association of human metapneumovirus with radiologically diagnosed community-acquired alveolar pneumonia in young children. J Pediatr. 2010; 156: 115-120. doi: 10.1016/j.jpeds.2009.07.014 PMID: 19782998