Differentiation of human influenza A viruses including the pandemic subtype H1N1/2009 by conventional multiplex PCR

Journal of Virological Methods

Volumn 168, Issue 1-2, 2010, Pages 94-97

  Furuse, Yuki ^a   Odagiri, Takashi ^a   Okada, Takashi ^a   Khandaker, Irona ^a   Shimabukuro, Kozue ^a   Sawayama, Rumi ^a   Suzuki, Akira ^a   Oshitani, Hitoshi ^a  

^a TOHOKU UNIVERSITY GRADUATE SCHOOL OF MEDICINE   (Japan)

Author keywords

Diagnosis; Epidemiology; Influenzavirus; Multiplex PCR; Pandemic

Indexed keywords

AMPLICON; ARTICLE; CONTROLLED STUDY; COST CONTROL; INFLUENZA VIRUS A H1N1; INFLUENZA VIRUS A H3N2; JAPAN; MULTIPLEX POLYMERASE CHAIN REACTION; NONHUMAN; PANDEMIC VIRUS; PRIORITY JOURNAL; SEASONAL VIRUS; SENSITIVITY ANALYSIS; STRAIN DIFFERENCE; VIRUS IDENTIFICATION; CLASSIFICATION; ECONOMICS; EVALUATION STUDY; GENETICS; HUMAN; INFLUENZA; MOLECULAR EPIDEMIOLOGY; POLYMERASE CHAIN REACTION; PROCEDURES; SENSITIVITY AND SPECIFICITY; VIROLOGY;

INFLUENZA A VIRUS; ORTHOMYXOVIRIDAE;

PRIMER DNA;

DNA PRIMERS; HUMANS; INFLUENZA A VIRUS, H1N1 SUBTYPE; INFLUENZA A VIRUS, H3N2 SUBTYPE; INFLUENZA, HUMAN; JAPAN; MOLECULAR EPIDEMIOLOGY; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; VIROLOGY;

EID: 77955093550     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2010.04.023     Document Type: Article

References (23)

1. Bose M.E., Beck E.T., Ledeboer N., Kehl S.C., Jurgens L.A., Patitucci T., Witt L., LaGue E., Darga P., He J., Fan J., Kumar S., Henrickson K.J. Rapid semiautomated subtyping of influenza virus species during the 2009 swine origin influenza A H1N1 virus epidemic in Milwaukee, Wisconsin. J. Clin. Microbiol. 2009, 47:2779-2786.
2. Dawood F.S., Jain S., Finelli L., Shaw M.W., Lindstrom S., Garten R.J., Gubareva L.V., Xu X., Bridges C.B., Uyeki T.M. Emergence of a novel swine-origin influenza A (H1N1) virus in humans. N. Engl. J. Med. 2009, 360:2605-2615. (see comment).
3. Dong H., Zhang Y., Xiong H., Yan A., Ding G., Chen Y., Xie L., Chen J., Zhang G., Hao P., Cong L., Lu Y., Che X., Wang X., Li Y., Yuen K.Y., Zhao G., Jin W. Detection of human novel influenza A (H1N1) viruses using multi-fluorescent real-time RT-PCR. Virus Res. 2010, 147:85-90.
4. Furuse Y., Suzuki A., Kamigaki T., Oshitani H. Evolution of the M gene of the influenza A virus in different host species: large-scale sequence analysis. Virol. J. 2009, 6:67.
5. Gunson R., Maclean A., Davies E., Bennett S., Miller R., Carman W.F. Development of a multiplex real-time RT-PCR that allows universal detection of influenza A viruses simultaneous typing of influenza A/H1N1/2009 virus. J. Virol. Methods 2010, 163:258-261.
6. Hoffmann E., Stech J., Guan Y., Webster R.G., Perez D.R. Universal primer set for the full-length amplification of all influenza A viruses. Arch. Virol. 2001, 146:2275-2289.
7. Jiang T., Kang X., Deng Y., Zhao H., Li X., Yu X., Yu M., Qin E., Zhu Q., Yang Y., Qin C. Development of a real-time RT-PCR assay for a novel influenza A (H1N1) virus. J. Virol. Methods 2010, 163:470-473.
8. Kang X., Li Y., Sun H., Wu W., Liu H., Lin F., Qing C., Chang G., Zhu Q., Chen W., Yang Y. Subtype identification of the novel A H1N1 other human influenza A viruses using an oligonucleotide microarray. Arch. Virol. 2010, 155:55-61.
9. Kilbourne E.D. Influenza pandemics of the 20th century. Emerg. Infect. Dis. 2006, 12:9-14.
10. LeBlanc J.J., Li Y., Bastien N., Forward K.R., Davidson R.J., Hatchette T.F. Switching gears for an influenza pandemic: validation of a duplex reverse transcriptase PCR assay for simultaneous detection confirmatory identification of pandemic (H1N1) 2009 influenza virus. J. Clin. Microbiol. 2009, 47:3805-3813.
11. Leo Y.S., Lye D.C., Barkham T., Krishnan P., Seow E., Chow A. Pandemic (H1N1) 2009 surveillance prevalence of seasonal influenza, Singapore. Emerg. Infect. Dis. 2009, 16:103-105.
12. MMWR Surveillance for the 2009 pandemic influenza A (H1N1) virus seasonal influenza viruses - New Zealand, 2009. MMWR Morb. Mortal. Wkly. Rep., vol. 58 2009, 918-921.
13. Nelson M.I., Simonsen L., Viboud C., Miller M.A., Holmes E.C. Phylogenetic analysis reveals the global migration of seasonal influenza A viruses. PLoS Pathog. 2007, 3:1220-1228.
14. Ono H. Pandemic (H1N1) 2009 in Japan, May-September 2009. IASR 2009, 30:257-258. (in Japanese).
15. Oshitani H., Kamigaki T., Suzuki A. Major issues challenges of influenza pandemic preparedness in developing countries. Emerg. Infect. Dis. 2008, 14:875-880.
16. Rambaut A., Pybus O.G., Nelson M.I., Viboud C., Taubenberger J.K., Holmes E.C. The genomic epidemiological dynamics of human influenza A virus. Nature 2008, 453:615-619.
17. Russell C.A., Jones T.C., Barr I.G., Cox N.J., Garten R.J., Gregory V., Gust I.D., Hampson A.W., Hay A.J., Hurt A.C., de Jong J.C., Kelso A., Klimov A.I., Kageyama T., Komadina N., Lapedes A.S., Lin Y.P., Mosterin A., Obuchi M., Odagiri T., Osterhaus A.D.M.E., Rimmelzwaan G.F., Shaw M.W., Skepner E., Stohr K., Tashiro M., Fouchier R.A.M., Smith D.J. The global circulation of seasonal influenza A (H3N2) viruses. Science 2008, 320:340-346.
18. Shek L.P.-C., Lee B.-W. Epidemiology seasonality of respiratory tract virus infections in the tropics. Paediatr. Respir. Rev. 2003, 4:105-111.
19. Suzuki Y. Natural selection on the influenza virus genome. Mol. Biol. Evol. 2006, 23:1902-1911.
20. Viboud C., Alonso W.J., Simonsen L. Influenza in tropical regions. PLoS Med. 2006, 3:e89. (see comment).
21. Whiley D.M., Bialasiewicz S., Bletchly C., Faux C.E., Harrower B., Gould A.R., Lambert S.B., Nimmo G.R., Nissen M.D., Sloots T.P. Detection of novel influenza A (H1N1) virus by real-time RT-PCR. J. Clin. Virol. 2009, 45:203-204.
22. World Health Organization CDC Protocol of Realtime RTPCR for Influenza A (H1N1) 2009, vol. 2009.
23. World Health Organization Pandemic (H1N1) 2009 - Update 82 2010, vol. 2010.