메뉴 건너뛰기




Volumn 6, Issue 2, 2015, Pages 1-9

CRISPR immunity drives rapid phage genome evolution in streptococcus thermophilus

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTIVE IMMUNITY; ARTICLE; BIOACCUMULATION; CONTROLLED STUDY; CRISPR CAS SYSTEM; GENE MUTATION; GENE REARRANGEMENT; GENE SEQUENCE; IMMUNIZATION; IN VITRO STUDY; MOLECULAR EVOLUTION; NONHUMAN; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; STREPTOCOCCUS THERMOPHILUS; ADAPTATION; GENETIC RECOMBINATION; GENETICS; HOST PARASITE INTERACTION; MUTATION RATE; VIROLOGY; VIRUS GENOME;

EID: 84928786976     PISSN: 21612129     EISSN: 21507511     Source Type: Journal    
DOI: 10.1128/mBio.00262-15     Document Type: Article
Times cited : (145)

References (31)
  • 1
    • 37249025333 scopus 로고    scopus 로고
    • Coevolution with viruses drives the evolution of bacterial mutation rates
    • Pal C, Maciá MD, Oliver A, Schachar I, Buckling A. 2007. Coevolution with viruses drives the evolution of bacterial mutation rates. Nature 450: 1079-1081. http://dx.doi.org/10.1038/nature06350.
    • (2007) Nature , vol.450 , pp. 1079-1081
    • Pal, C.1    Maciá, M.D.2    Oliver, A.3    Schachar, I.4    Buckling, A.5
  • 2
    • 0028203644 scopus 로고
    • Short-sighted evolution and the virulence of pathogenic microorganisms
    • Levin BR, Bull JJ. 1994. Short-sighted evolution and the virulence of pathogenic microorganisms. Trends Microbiol 2:76-81. http://dx.doi.org/10.1016/0966-842X(94)90538-X.
    • (1994) Trends Microbiol , vol.2 , pp. 76-81
    • Levin, B.R.1    Bull, J.J.2
  • 3
    • 79953281735 scopus 로고    scopus 로고
    • Bacteria-phage antagonistic coevolution in soil
    • Gómez P, Buckling A. 2011. Bacteria-phage antagonistic coevolution in soil. Science 332:106-109. http://dx.doi.org/10.1126/science.1198767.
    • (2011) Science , vol.332 , pp. 106-109
    • Gómez, P.1    Buckling, A.2
  • 4
    • 34548792911 scopus 로고    scopus 로고
    • Marine viruses—major players in the global ecosystem
    • Suttle CA. 2007. Marine viruses—major players in the global ecosystem. Nat Rev Microbiol 5:801-812. http://dx.doi.org/10.1038/nrmicro1750.
    • (2007) Nat Rev Microbiol , vol.5 , pp. 801-812
    • Suttle, C.A.1
  • 5
    • 0036267740 scopus 로고    scopus 로고
    • Identification of genes that are associated with DNA repeats in prokaryotes
    • Jansen R, Embden JD, Gaastra W, Schouls LM. 2002. Identification of genes that are associated with DNA repeats in prokaryotes. Mol Microbiol 43:1565-1575. http://dx.doi.org/10.1046/j.1365-2958.2002.02839.x.
    • (2002) Mol Microbiol , vol.43 , pp. 1565-1575
    • Jansen, R.1    Embden, J.D.2    Gaastra, W.3    Schouls, L.M.4
  • 11
    • 79953779608 scopus 로고    scopus 로고
    • Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system
    • Sinkunas T, Gasiunas G, Fremaux C, Barrangou R, Horvath P, Siksnys V. 2011. Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system. EMBO J 30:1335-1342. http://dx.doi.org/10.1038/emboj.2011.41.
    • (2011) EMBO J , vol.30 , pp. 1335-1342
    • Sinkunas, T.1    Gasiunas, G.2    Fremaux, C.3    Barrangou, R.4    Horvath, P.5    Siksnys, V.6
  • 12
    • 84873571066 scopus 로고    scopus 로고
    • In vitro reconstitution of cascade-mediated CRISPR immunity in Streptococcus thermophilus
    • Sinkunas T, Gasiunas G, Waghmare SP, Dickman MJ, Barrangou R, Horvath P, Siksnys V. 2013. In vitro reconstitution of cascade-mediated CRISPR immunity in Streptococcus thermophilus. EMBO J 32:385-394. http://dx.doi.org/10.1038/emboj.2012.352.
    • (2013) EMBO J , vol.32 , pp. 385-394
    • Sinkunas, T.1    Gasiunas, G.2    Waghmare, S.P.3    Dickman, M.J.4    Barrangou, R.5    Horvath, P.6    Siksnys, V.7
  • 14
    • 84876001507 scopus 로고    scopus 로고
    • The population and evolutionary dynamics of phage and bacteria with CRISPR-mediated immunity
    • Levin BR, Moineau S, Bushman M, Barrangou R. 2013. The population and evolutionary dynamics of phage and bacteria with CRISPR-mediated immunity. PLoS Genet 9:e1003312. http://dx.doi.org/10.1371/journal.pgen.1003312.
    • (2013) Plos Genet , pp. 9
    • Levin, B.R.1    Moineau, S.2    Bushman, M.3    Barrangou, R.4
  • 17
    • 80755145195 scopus 로고    scopus 로고
    • The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli
    • Sapranauskas R, Gasiunas G, Fremaux C, Barrangou R, Horvath P, Siksnys V. 2011. The Streptococcus thermophilus CRISPR/Cas system provides immunity in Escherichia coli. Nucleic Acids Res 39:9275-9282. http://dx.doi.org/10.1093/nar/gkr606.
    • (2011) Nucleic Acids Res , vol.39 , pp. 9275-9282
    • Sapranauskas, R.1    Gasiunas, G.2    Fremaux, C.3    Barrangou, R.4    Horvath, P.5    Siksnys, V.6
  • 18
    • 64049118040 scopus 로고    scopus 로고
    • Short motif sequences determine the targets of the prokaryotic CRISPR defence system
    • Mojica FJ, Díez-Villaseñor C, García-Martínez J, Almendros C. 2009. Short motif sequences determine the targets of the prokaryotic CRISPR defence system. Microbiology 155:733-740. http://dx.doi.org/10.1099/mic.0.023960-0.
    • (2009) Microbiology , vol.155 , pp. 733-740
    • Mojica, F.J.1    Díez-Villaseñor, C.2    García-Martínez, J.3    Almendros, C.4
  • 19
    • 84873129118 scopus 로고    scopus 로고
    • Phage mutations in response to CRISPR diversification in a bacterial population
    • Sun CL, Barrangou R, Thomas BC, Horvath P, Fremaux C, Banfield JF. 2013. Phage mutations in response to CRISPR diversification in a bacterial population. Environ Microbiol 15:463-470. http://dx.doi.org/10.1111/j.1462-2920.2012.02879.x.
    • (2013) Environ Microbiol , vol.15 , pp. 463-470
    • Sun, C.L.1    Barrangou, R.2    Thomas, B.C.3    Horvath, P.4    Fremaux, C.5    Banfield, J.F.6
  • 21
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek M, Chylinski K, Fonfara I, Hauer M, Doudna JA, Charpentier E. 2012. A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337:816-821. http://dx.doi.org/10.1126/science.1225829.
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.A.5    Charpentier, E.6
  • 22
    • 78649342032 scopus 로고    scopus 로고
    • The Escherichia coli CRISPR system protects from lambda lysogenization, lysogens, and prophage induction
    • Edgar R, Qimron U. 2010. The Escherichia coli CRISPR system protects from lambda lysogenization, lysogens, and prophage induction. J Bacteriol 192:6291-6294. http://dx.doi.org/10.1128/JB.00644-10.
    • (2010) J Bacteriol , vol.192 , pp. 6291-6294
    • Edgar, R.1    Qimron, U.2
  • 24
    • 84895871173 scopus 로고    scopus 로고
    • DNA interrogation by the CRISPR RNA-guided endonuclease Cas 9
    • Sternberg SH, Redding S, Jinek M, Greene EC, Doudna JA. 2014. DNA interrogation by the CRISPR RNA-guided endonuclease Cas 9. Nature 507:62-67. http://dx.doi.org/10.1038/nature13011.
    • (2014) Nature , vol.507 , pp. 62-67
    • Sternberg, S.H.1    Redding, S.2    Jinek, M.3    Greene, E.C.4    Doudna, J.A.5
  • 25
    • 0032844934 scopus 로고    scopus 로고
    • Comparative genomics of Streptococcus thermophilus phage species supports a modular evolution theory
    • Lucchini S, Desiere F, Brüssow H. 1999. Comparative genomics of Streptococcus thermophilus phage species supports a modular evolution theory. J Virol 73:8647-8656.
    • (1999) J Virol , vol.73 , pp. 8647-8656
    • Lucchini, S.1    Desiere, F.2    Brüssow, H.3
  • 26
    • 44449133775 scopus 로고    scopus 로고
    • Virus population dynamics and acquired virus resistance in natural microbial communities
    • Andersson AF, Banfield JF. 2008. Virus population dynamics and acquired virus resistance in natural microbial communities. Science 320: 1047-1050. http://dx.doi.org/10.1126/science.1157358.
    • (2008) Science , vol.320 , pp. 1047-1050
    • Andersson, A.F.1    Banfield, J.F.2
  • 27
    • 84861760530 scopus 로고    scopus 로고
    • IDBA-UD: A de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
    • Peng Y, Leung HC, Yiu SM, Chin FY. 2012. IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Bioinformatics 28:1420-1428. http://dx.doi.org/10.1093/bioinformatics/bts174.
    • (2012) Bioinformatics , vol.28 , pp. 1420-1428
    • Peng, Y.1    Leung, H.C.2    Yiu, S.M.3    Chin, F.Y.4
  • 28
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25. http://dx.doi.org/10.1186/gb-2009-10-3-r25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 29
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18:821-829. http://dx.doi.org/10.1101/gr.074492.107.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 30
    • 84871956840 scopus 로고    scopus 로고
    • Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
    • Sharon I, Morowitz MJ, Thomas BC, Costello EK, Relman DA, Banfield JF. 2013. Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization. Genome Res 23:111-120. http://dx.doi.org/10.1101/gr.142315.112.
    • (2013) Genome Res , vol.23 , pp. 111-120
    • Sharon, I.1    Morowitz, M.J.2    Thomas, B.C.3    Costello, E.K.4    Relman, D.A.5    Banfield, J.F.6
  • 31
    • 36949007183 scopus 로고    scopus 로고
    • Strainer: Software for analysis of population variation in community genomic datasets
    • Eppley JM, Tyson GW, Getz WM, Banfield JF. 2007. Strainer: software for analysis of population variation in community genomic datasets.BMC Bioinformatics 8:398.
    • (2007) BMC Bioinformatics , vol.8 , pp. 398
    • Eppley, J.M.1    Tyson, G.W.2    Getz, W.M.3    Banfield, J.F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.