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Volumn 73, Issue 10, 1999, Pages 8647-8656

Comparative genomics of Streptococcus thermophilus phage species supports a modular evolution theory

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Indexed keywords

DNA;

EID: 0032844934     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.73.10.8647-8656.1999     Document Type: Article
Times cited : (133)

References (48)
  • 2
    • 0019231684 scopus 로고
    • A theory of modular evolution for bacteriophages
    • Botstein, D. 1980. A theory of modular evolution for bacteriophages. Ann. N. Y. Acad. Sci. 354:484-491.
    • (1980) Ann. N. Y. Acad. Sci. , vol.354 , pp. 484-491
    • Botstein, D.1
  • 3
    • 0028864083 scopus 로고
    • Sequence analysis of the Lactococcus lactis temperate bacteriophage BK5-T and demonstration that the phage DNA has cohesive ends
    • Boyce, J. D., B. E. Davidson, and A. J. Hillier. 1995. Sequence analysis of the Lactococcus lactis temperate bacteriophage BK5-T and demonstration that the phage DNA has cohesive ends. Appl. Environ. Microbiol. 61:4089-4098.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 4089-4098
    • Boyce, J.D.1    Davidson, B.E.2    Hillier, A.J.3
  • 4
    • 0028824839 scopus 로고
    • Spontaneous deletion mutants of the Lactococcus lactis temperate bacteriophage BK5-T and localization of the BK5-T attP site
    • Boyce, J. D., B. E. Davidson, and A. J. Hillier. 1995. Spontaneous deletion mutants of the Lactococcus lactis temperate bacteriophage BK5-T and localization of the BK5-T attP site. Appl. Environ. Microbiol. 61:4105-4109.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 4105-4109
    • Boyce, J.D.1    Davidson, B.E.2    Hillier, A.J.3
  • 5
    • 0009985276 scopus 로고    scopus 로고
    • Phages of Streptococcus thermophilus
    • R. Webster and A. Granoff (ed.). Academic Press, London, England
    • Brüssow, H. 1999. Phages of Streptococcus thermophilus. In R. Webster and A. Granoff (ed.), Encyclopedia of virology, 2nd ed. Academic Press, London, England.
    • (1999) Encyclopedia of Virology, 2nd Ed.
    • Brüssow, H.1
  • 6
    • 0028846816 scopus 로고
    • Characterization of a temperate Streptococcus thermophilus bacteriophage and its genetic relationship with lytic phages
    • Brüssow, H., and A. Bruttin. 1995. Characterization of a temperate Streptococcus thermophilus bacteriophage and its genetic relationship with lytic phages. Virology 212:632-640.
    • (1995) Virology , vol.212 , pp. 632-640
    • Brüssow, H.1    Bruttin, A.2
  • 7
    • 0031929326 scopus 로고    scopus 로고
    • Molecular ecology and evolution of Streptococcus thermophilus bacteriophages - A review
    • Brüssow, H., A. Bruttin, F. Desiere, S. Lucchini, and S. Foley. 1998. Molecular ecology and evolution of Streptococcus thermophilus bacteriophages - a review. Virus Genes 16:95-109.
    • (1998) Virus Genes , vol.16 , pp. 95-109
    • Brüssow, H.1    Bruttin, A.2    Desiere, F.3    Lucchini, S.4    Foley, S.5
  • 8
    • 0028110412 scopus 로고
    • Detection and classification of Streptococcus thermophilus bacteriophages isolated from industrial milk fermentation
    • Brüssow, H., M. Frémont, A. Bruttin, J. Sidoti, A. Constable, and V. Fryder. 1994. Detection and classification of Streptococcus thermophilus bacteriophages isolated from industrial milk fermentation. Appl. Environ. Microbiol. 60:4537-4543.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 4537-4543
    • Brüssow, H.1    Frémont, M.2    Bruttin, A.3    Sidoti, J.4    Constable, A.5    Fryder, V.6
  • 9
    • 0028207634 scopus 로고
    • Distinct Streptococcus thermophilus bacteriophages share an extremely conserved DNA fragment
    • Brüssow, H., A. Probst, M. Frémont, and J. Sidoti. 1994. Distinct Streptococcus thermophilus bacteriophages share an extremely conserved DNA fragment. Virology 200:854-857.
    • (1994) Virology , vol.200 , pp. 854-857
    • Brüssow, H.1    Probst, A.2    Frémont, M.3    Sidoti, J.4
  • 10
    • 0343371827 scopus 로고    scopus 로고
    • Site-specific spontaneous deletions in three genome regions of a temperate Streptococcus thermophilus phage
    • Bruttin, A., and H. Brüssow. 1996. Site-specific spontaneous deletions in three genome regions of a temperate Streptococcus thermophilus phage. Virology 219:96-104.
    • (1996) Virology , vol.219 , pp. 96-104
    • Bruttin, A.1    Brüssow, H.2
  • 12
    • 0030739054 scopus 로고    scopus 로고
    • Characterization of the lysogeny DNA module from the temperate Streptococcus thermophilus bacteriophage phi Sfi21
    • Bruttin, A., F. Desiere, S. Lucchini, S. Foley, and H. Brüssow. 1997. Characterization of the lysogeny DNA module from the temperate Streptococcus thermophilus bacteriophage phi Sfi21. Virology 233:136-148.
    • (1997) Virology , vol.233 , pp. 136-148
    • Bruttin, A.1    Desiere, F.2    Lucchini, S.3    Foley, S.4    Brüssow, H.5
  • 13
    • 0022524928 scopus 로고
    • Genetic recombination between RNA components of a multipartite plant virus
    • Bujarski, J. J., and P. Kaesberg. 1986. Genetic recombination between RNA components of a multipartite plant virus. Nature 321:528-531.
    • (1986) Nature , vol.321 , pp. 528-531
    • Bujarski, J.J.1    Kaesberg, P.2
  • 14
    • 0000332222 scopus 로고
    • Evolution of dsDNA tailed bacteriophage genomes
    • Casjens, S., G. Hatful, and R. Hendrix. 1992. Evolution of dsDNA tailed bacteriophage genomes. Semin. Virol. 3:383-397.
    • (1992) Semin. Virol. , vol.3 , pp. 383-397
    • Casjens, S.1    Hatful, G.2    Hendrix, R.3
  • 15
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet, F. 1988. Multiple sequence alignment with hierarchical clustering. Nucleic. Acids. Res. 16:10881-10890.
    • (1988) Nucleic. Acids. Res. , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 16
    • 0030854494 scopus 로고    scopus 로고
    • A highly conserved DNA replication module from Streptococcus thermophilus phages is similar in sequence and topology to a module from Lactococcus lactis phages
    • Desiere, F., S. Lucchini, A. Bruttin, M.-C. Zwahlen, and H. Brüssow. 1997. A highly conserved DNA replication module from Streptococcus thermophilus phages is similar in sequence and topology to a module from Lactococcus lactis phages. Virology 234:372-382.
    • (1997) Virology , vol.234 , pp. 372-382
    • Desiere, F.1    Lucchini, S.2    Bruttin, A.3    Zwahlen, M.-C.4    Brüssow, H.5
  • 17
    • 0032519891 scopus 로고    scopus 로고
    • Evolution of Streptococcus thermophilus bacteriophage genomes by modular exchanges followed by point mutations and small deletions and insertions
    • Desiere, F., S. Lucchini, and H. Brüssow. 1998. Evolution of Streptococcus thermophilus bacteriophage genomes by modular exchanges followed by point mutations and small deletions and insertions. Virology 241:345-356.
    • (1998) Virology , vol.241 , pp. 345-356
    • Desiere, F.1    Lucchini, S.2    Brüssow, H.3
  • 18
    • 0033178790 scopus 로고    scopus 로고
    • Evolutionary analysis of the DNA packaging and head morphogenesis modules in the temperate cos-site Streptococcus thermophilus bacteriophage øSfi21
    • Desiere, F., S. Lucchini, and H. Brüssow. 1999. Evolutionary analysis of the DNA packaging and head morphogenesis modules in the temperate cos-site Streptococcus thermophilus bacteriophage øSfi21. Virology 260:244-253.
    • (1999) Virology , vol.260 , pp. 244-253
    • Desiere, F.1    Lucchini, S.2    Brüssow, H.3
  • 19
    • 0032566919 scopus 로고    scopus 로고
    • A short noncoding viral DNA element showing characteristics of a replication origin confers bacteriophage resistance to Streptococcus thermophilus
    • Foley, S., S. Lucchini, M.-C. Zwahlen, and H. Brüssow. 1998. A short noncoding viral DNA element showing characteristics of a replication origin confers bacteriophage resistance to Streptococcus thermophilus. Virology 250:377-387.
    • (1998) Virology , vol.250 , pp. 377-387
    • Foley, S.1    Lucchini, S.2    Zwahlen, M.-C.3    Brüssow, H.4
  • 21
    • 0032577269 scopus 로고    scopus 로고
    • Genome structure of mycobacteriophage D29: Implications for phage evolution
    • Ford, M. E., G. J. Sarkis, A. E. Belanger, R. Hendrix, and G. F. Hatful. 1998. Genome structure of mycobacteriophage D29: implications for phage evolution. J. Mol. Biol. 279:143-164.
    • (1998) J. Mol. Biol. , vol.279 , pp. 143-164
    • Ford, M.E.1    Sarkis, G.J.2    Belanger, A.E.3    Hendrix, R.4    Hatful, G.F.5
  • 22
    • 0033542481 scopus 로고    scopus 로고
    • Marine viruses and their biogeochemical and ecological effects
    • Fuhrman, J. A. 1999. Marine viruses and their biogeochemical and ecological effects. Nature 399:541-548.
    • (1999) Nature , vol.399 , pp. 541-548
    • Fuhrman, J.A.1
  • 23
    • 0028902203 scopus 로고
    • Characterization and distribution of two insertion sequences, IS1191 and iso-IS981, in Streptococcus thermophilus: Does intergenic transfer of insertion sequences occur in lactic acid bacteria co-cultures?
    • Guédon, G., F. Bourgoin, M. Pébay, Y. Roussel, C. Colmin, J. M. Simonet, and B. Decaris. 1995. Characterization and distribution of two insertion sequences, IS1191 and iso-IS981, in Streptococcus thermophilus: does intergenic transfer of insertion sequences occur in lactic acid bacteria co-cultures? Mol. Microbiol. 16:69-78.
    • (1995) Mol. Microbiol. , vol.16 , pp. 69-78
    • Guédon, G.1    Bourgoin, F.2    Pébay, M.3    Roussel, Y.4    Colmin, C.5    Simonet, J.M.6    Decaris, B.7
  • 25
    • 0033514996 scopus 로고    scopus 로고
    • Evolutionary relationships among diverse bacteriophages and prophages: All the world's a phage
    • Hendrix, R., M. C. M. Smith, R. N. Burns, M. E. Ford, and G. F. Hatfull. 1999. Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage. Proc. Natl. Acad. Sci. USA 96:2192-2197.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 2192-2197
    • Hendrix, R.1    Smith, M.C.M.2    Burns, R.N.3    Ford, M.E.4    Hatfull, G.F.5
  • 26
    • 0025179728 scopus 로고
    • Evidence for the exchange of segments between genomes during the evolution of lambdoid bacteriophages
    • Highton, P. J., Y. Chang, and R. J. Myers. 1990. Evidence for the exchange of segments between genomes during the evolution of lambdoid bacteriophages. Mol. Microbiol. 4:1329-1340.
    • (1990) Mol. Microbiol. , vol.4 , pp. 1329-1340
    • Highton, P.J.1    Chang, Y.2    Myers, R.J.3
  • 27
    • 44949272730 scopus 로고
    • A time-efficient, linear-space local similarity algorithm
    • Huang, X., and W. Miller. 1991. A time-efficient, linear-space local similarity algorithm. Adv. Appl. Math. 12:337-357.
    • (1991) Adv. Appl. Math. , vol.12 , pp. 337-357
    • Huang, X.1    Miller, W.2
  • 28
    • 0033602710 scopus 로고    scopus 로고
    • High-frequency homologous genetic recombination of an arterivirus, lactate dehydrogenase-elevating virus, in mice and evolution of neuropathogenic variants
    • Li, K., Z. Chen, and P. Plagemann. 1999. High-frequency homologous genetic recombination of an arterivirus, lactate dehydrogenase-elevating virus, in mice and evolution of neuropathogenic variants. Virology 258:73-83.
    • (1999) Virology , vol.258 , pp. 73-83
    • Li, K.1    Chen, Z.2    Plagemann, P.3
  • 29
    • 0021919480 scopus 로고
    • Rapid and sensitive protein similarity searches
    • Lipman, D. J., and W. R. Pearson. 1985. Rapid and sensitive protein similarity searches. Science 227:1435-1441.
    • (1985) Science , vol.227 , pp. 1435-1441
    • Lipman, D.J.1    Pearson, W.R.2
  • 30
    • 0030749539 scopus 로고    scopus 로고
    • Two groups of bacteriophages infecting Streptococcus thermophilus can be distinguished on the basis of mode of packaging and genetic determinants for major structural proteins
    • Le Marrec, C., D. van Sinderen, L. Walsh, E. Stanley, E. Vlegels, S. Moineau, P. Heinze, G. Fitzgerald, and B. Fayard. 1997. Two groups of bacteriophages infecting Streptococcus thermophilus can be distinguished on the basis of mode of packaging and genetic determinants for major structural proteins. Appl. Environ. Microbiol. 63:3246-3253.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3246-3253
    • Le Marrec, C.1    Van Sinderen, D.2    Walsh, L.3    Stanley, E.4    Vlegels, E.5    Moineau, S.6    Heinze, P.7    Fitzgerald, G.8    Fayard, B.9
  • 31
    • 0032551191 scopus 로고    scopus 로고
    • The structural gene module in Streptococcus thermophilus bacteriophage phi Sfi11 shows a hierarchy of relatedness to Siphoviridae from a wide range of bacterial hosts
    • Lucchini, S., F. Desiere, and H. Brüssow. 1998. The structural gene module in Streptococcus thermophilus bacteriophage phi Sfi11 shows a hierarchy of relatedness to Siphoviridae from a wide range of bacterial hosts. Virology 246:63-73.
    • (1998) Virology , vol.246 , pp. 63-73
    • Lucchini, S.1    Desiere, F.2    Brüssow, H.3
  • 32
    • 0033179487 scopus 로고    scopus 로고
    • The genetic relationship between virulent and temperate Streptococcus thermophilus bacteriophages: Whole genome comparison of cos-site phages Sfi19 and Sfi21
    • Lucchini, S., F. Desiere, and H. Brüssow. 1999. The genetic relationship between virulent and temperate Streptococcus thermophilus bacteriophages: whole genome comparison of cos-site phages Sfi19 and Sfi21. Virology 260: 232-243.
    • (1999) Virology , vol.260 , pp. 232-243
    • Lucchini, S.1    Desiere, F.2    Brüssow, H.3
  • 33
    • 0022633650 scopus 로고
    • High-frequency RNA recombination of murine coronaviruses
    • Makino, S., J. G. Keck, S. T. Stohlman, and M. M. C. Lai. 1986. High-frequency RNA recombination of murine coronaviruses. J. Virol. 57:729-737.
    • (1986) J. Virol. , vol.57 , pp. 729-737
    • Makino, S.1    Keck, J.G.2    Stohlman, S.T.3    Lai, M.M.C.4
  • 34
    • 0031761964 scopus 로고    scopus 로고
    • Taxonomy of bacterial viruses: Establishment of tailed virus genera and the order Caudovirales
    • Maniloff, J., and H.-W. Ackermann. 1998. Taxonomy of bacterial viruses: establishment of tailed virus genera and the order Caudovirales. Arch. Virol. 143:2051-2063.
    • (1998) Arch. Virol. , vol.143 , pp. 2051-2063
    • Maniloff, J.1    Ackermann, H.-W.2
  • 35
    • 0030470987 scopus 로고    scopus 로고
    • Recent revisions of the rules of virus classification and nomenclature
    • Mayo, M. A. 1996. Recent revisions of the rules of virus classification and nomenclature. Arch. Virol. 141:2479-2484.
    • (1996) Arch. Virol. , vol.141 , pp. 2479-2484
    • Mayo, M.A.1
  • 36
    • 0025007887 scopus 로고
    • Molecular genetics of Streptococcus thermophilus
    • Mercenier, A. 1990. Molecular genetics of Streptococcus thermophilus. FEMS Microbiol. Rev. 87:61-78.
    • (1990) FEMS Microbiol. Rev. , vol.87 , pp. 61-78
    • Mercenier, A.1
  • 37
    • 0029882472 scopus 로고    scopus 로고
    • Defective site-specific integration elements are present in the genome of virulent bacteriophage LL-H of Lactobacillus delbrueckii
    • Mikkonen, M., L. Dupont, T. Alatossava, and P. Ritzenthaler. 1996. Defective site-specific integration elements are present in the genome of virulent bacteriophage LL-H of Lactobacillus delbrueckii. Appl. Environ. Microbiol. 62:1847-1851.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1847-1851
    • Mikkonen, M.1    Dupont, L.2    Alatossava, T.3    Ritzenthaler, P.4
  • 38
    • 0019416720 scopus 로고
    • Sequence organization of the origins of DNA replication in lambdoid coliphages
    • Moore, D. D., K. J. Denniston, and F. R. Blattner. 1981. Sequence organization of the origins of DNA replication in lambdoid coliphages. Gene 14:91-101.
    • (1981) Gene , vol.14 , pp. 91-101
    • Moore, D.D.1    Denniston, K.J.2    Blattner, F.R.3
  • 39
    • 0032004892 scopus 로고    scopus 로고
    • Comparison of the lysogeny modules from the temperate Streptococcus thermophilus bacteriophages TP-J34 and Sfi21: Implications for the modular theory of phage evolution
    • Neve, H., K. I. Zenz, F. Desiere, A. Koch, K. J. Heller, and H. Brüssow. 1998. Comparison of the lysogeny modules from the temperate Streptococcus thermophilus bacteriophages TP-J34 and Sfi21: implications for the modular theory of phage evolution. Virology 241:61-72.
    • (1998) Virology , vol.241 , pp. 61-72
    • Neve, H.1    Zenz, K.I.2    Desiere, F.3    Koch, A.4    Heller, K.J.5    Brüssow, H.6
  • 40
    • 0030723809 scopus 로고    scopus 로고
    • Sequence analysis and characterization of phi O1205, a temperate bacteriophage infecting Streptococcus thermophilus CNRZ1205
    • Stanley, E., G. F. Fitzgerald, M. C. LeMarrec, B. Fayard, and D. van Sinderen. 1997. Sequence analysis and characterization of phi O1205, a temperate bacteriophage infecting Streptococcus thermophilus CNRZ1205. Microbiology 143:3417-3429.
    • (1997) Microbiology , vol.143 , pp. 3417-3429
    • Stanley, E.1    Fitzgerald, G.F.2    LeMarrec, M.C.3    Fayard, B.4    Van Sinderen, D.5
  • 41
    • 0001888603 scopus 로고    scopus 로고
    • Virus evolution
    • B. N. Fields, D. M. Knipe, and P. M. Howley (ed.). Raven Press, New York, N.Y.
    • Strauss, E. G., J. H. Strauss, and A. J. Levine. 1996. Virus evolution, p. 153-171. In B. N. Fields, D. M. Knipe, and P. M. Howley (ed.), Virology, 3rd ed. Raven Press, New York, N.Y.
    • (1996) Virology, 3rd Ed. , pp. 153-171
    • Strauss, E.G.1    Strauss, J.H.2    Levine, A.J.3
  • 42
    • 0032566488 scopus 로고    scopus 로고
    • Genome plasticity in the distal tail fiber locus of the T-even bacteriophage: Recombination between conserved motifs swaps adhesin specificity
    • Tétart, F., C. Desplats, and H. Krisch. 1998. Genome plasticity in the distal tail fiber locus of the T-even bacteriophage: recombination between conserved motifs swaps adhesin specificity. J. Mol. Biol. 282:543-556.
    • (1998) J. Mol. Biol. , vol.282 , pp. 543-556
    • Tétart, F.1    Desplats, C.2    Krisch, H.3
  • 43
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 44
    • 0020678133 scopus 로고
    • Intertypic recombination in poliovirus: Genetic and biochemical studies
    • Tolskaya, E. A., L. A. Romanov, M. S. Kolesnikova, and V. I. Agol. 1983. Intertypic recombination in poliovirus: genetic and biochemical studies. Virology 124:121-132.
    • (1983) Virology , vol.124 , pp. 121-132
    • Tolskaya, E.A.1    Romanov, L.A.2    Kolesnikova, M.S.3    Agol, V.I.4
  • 45
    • 0033102123 scopus 로고    scopus 로고
    • Complete genomic sequence of the lytic bacteriophage DT1 of Streptococcus thermophilus
    • Tremblay, D., and S. Moineau. 1999. Complete genomic sequence of the lytic bacteriophage DT1 of Streptococcus thermophilus. Virology 255:63-76.
    • (1999) Virology , vol.255 , pp. 63-76
    • Tremblay, D.1    Moineau, S.2
  • 46
    • 0033119814 scopus 로고    scopus 로고
    • Prisoner's dilemma in an RNA virus
    • Turner, P. E., and L. Chao. 1999. Prisoner's dilemma in an RNA virus. Nature 398:441-443.
    • (1999) Nature , vol.398 , pp. 441-443
    • Turner, P.E.1    Chao, L.2
  • 47
    • 0031060163 scopus 로고    scopus 로고
    • Recombinational history and molecular evolution of Western equine encephalomyelitis complex alphavirus
    • Weaver, S. C., W. Kang, Y. Shirako, T. Rümenapf, E. G. Strauss, and J. H. Strauss. 1997. Recombinational history and molecular evolution of Western equine encephalomyelitis complex alphavirus. J. Virol. 71:613-623.
    • (1997) J. Virol. , vol.71 , pp. 613-623
    • Weaver, S.C.1    Kang, W.2    Shirako, Y.3    Rümenapf, T.4    Strauss, E.G.5    Strauss, J.H.6
  • 48
    • 0020050946 scopus 로고
    • Molecular mechanisms of variation in influenza viruses
    • Webster, R. G., W. G. Laver, G. M. Air, and G. C. Schild. 1982. Molecular mechanisms of variation in influenza viruses. Nature 294:115-121.
    • (1982) Nature , vol.294 , pp. 115-121
    • Webster, R.G.1    Laver, W.G.2    Air, G.M.3    Schild, G.C.4


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