-
1
-
-
34848825637
-
Chromatin remodelling is a major source of coexpression of linked genes in yeast
-
Batada NN, Urrutia AO, Hurst LD. 2007. Chromatin remodelling is a major source of coexpression of linked genes in yeast. Trends in Genetics 23:480-484. doi: 10.1016/j.tig.2007.08.003.
-
(2007)
Trends in Genetics
, vol.23
, pp. 480-484
-
-
Batada, N.N.1
Urrutia, A.O.2
Hurst, L.D.3
-
2
-
-
40349116304
-
A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae
-
Berretta J, Pinskaya M, Morillon A. 2008. A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae. Genes & Development 22:615-626. doi: 10.1101/gad.458008.
-
(2008)
Genes & Development
, vol.22
, pp. 615-626
-
-
Berretta, J.1
Pinskaya, M.2
Morillon, A.3
-
3
-
-
84455167601
-
Promoter elements regulate cytoplasmic m RNA decay
-
Bregman A, Avraham-Kelbert M, Barkai O, Duek L, Guterman A, Choder M. 2011. Promoter elements regulate cytoplasmic m RNA decay. Cell 147:1473-1483. doi: 10.1016/j.cell.2011.12.005.
-
(2011)
Cell
, vol.147
, pp. 1473-1483
-
-
Bregman, A.1
Avraham-Kelbert, M.2
Barkai, O.3
Duek, L.4
Guterman, A.5
Choder, M.6
-
5
-
-
36048951040
-
Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae
-
Camblong J, Iglesias N, Fickentscher C, Dieppois G, Stutz F. 2007. Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae. Cell 131:706-717. doi: 10.1016/j. cell.2007.09.014.
-
(2007)
Cell
, vol.131
, pp. 706-717
-
-
Camblong, J.1
Iglesias, N.2
Fickentscher, C.3
Dieppois, G.4
Stutz, F.5
-
6
-
-
84880177044
-
Bimodal expression of PHO84 is modulated by early termination of antisense transcription
-
Castelnuovo M, Rahman S, Guffanti E, Infantino V, Stutz F, Zenklusen D. 2013. Bimodal expression of PHO84 is modulated by early termination of antisense transcription. Nature Structural & Molecular Biology 20:851-858. doi: 10.1038/nsmb.2598.
-
(2013)
Nature Structural & Molecular Biology
, vol.20
, pp. 851-858
-
-
Castelnuovo, M.1
Rahman, S.2
Guffanti, E.3
Infantino, V.4
Stutz, F.5
Zenklusen, D.6
-
7
-
-
78751659330
-
Nascent transcript sequencing visualizes transcription at nucleotide resolution
-
Churchman LS, Weissman JS. 2011. Nascent transcript sequencing visualizes transcription at nucleotide resolution. Nature 469:368-373. doi: 10.1038/nature09652.
-
(2011)
Nature
, vol.469
, pp. 368-373
-
-
Churchman, L.S.1
Weissman, J.S.2
-
8
-
-
0033780450
-
A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression
-
Cohen BA, Mitra RD, Hughes JD, Church GM. 2000. A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression. Nature Genetics 26:183-186. doi: 10.1038/79896.
-
(2000)
Nature Genetics
, vol.26
, pp. 183-186
-
-
Cohen, B.A.1
Mitra, R.D.2
Hughes, J.D.3
Church, G.M.4
-
9
-
-
69949173145
-
Gene looping is conferred by activator-dependent interaction of transcription initiation and termination machineries
-
El Kaderi B, Medler S, Raghunayakula S, Ansari A. 2009. Gene looping is conferred by activator-dependent interaction of transcription initiation and termination machineries. The Journal of Biological Chemistry 284:25015-25025. doi: 10.1074/jbc.M109.007948.
-
(2009)
The Journal of Biological Chemistry
, vol.284
, pp. 25015-25025
-
-
El Kaderi, B.1
Medler, S.2
Raghunayakula, S.3
Ansari, A.4
-
10
-
-
84864309100
-
Clocks, metabolism, and the epigenome
-
Feng D, Lazar MA. 2012. Clocks, metabolism, and the epigenome. Molecular Cell 47:158-167. doi: 10.1016/j. molcel.2012.06.026.
-
(2012)
Molecular Cell
, vol.47
, pp. 158-167
-
-
Feng, D.1
Lazar, M.A.2
-
11
-
-
77953204308
-
High-resolution transcription atlas of the mitotic cell cycle in budding yeast
-
Granovskaia MV, Jensen LJ, Ritchie ME, Toedling J, Ning Y, Bork P, Huber W, Steinmetz LM. 2010. High-resolution transcription atlas of the mitotic cell cycle in budding yeast. Genome Biology 11:R24. doi: 10.1186/ gb-2010-11-3-r24.
-
(2010)
Genome Biology
, vol.11
-
-
Granovskaia, M.V.1
Jensen, L.J.2
Ritchie, M.E.3
Toedling, J.4
Ning, Y.5
Bork, P.6
Huber, W.7
Steinmetz, L.M.8
-
12
-
-
78650873365
-
Intergenic transcription causes repression by directing nucleosome assembly
-
Hainer SJ, Pruneski JA, Mitchell RD, Monteverde RM, Martens JA. 2011. Intergenic transcription causes repression by directing nucleosome assembly. Genes & Development 25:29-40. doi: 10.1101/gad.1975011.
-
(2011)
Genes & Development
, vol.25
, pp. 29-40
-
-
Hainer, S.J.1
Pruneski, J.A.2
Mitchell, R.D.3
Monteverde, R.M.4
Martens, J.A.5
-
13
-
-
52049084405
-
The anchor-away technique: Rapid, conditional establishment of yeast mutant phenotypes
-
Haruki H, Nishikawa J, Laemmli UK. 2008. The anchor-away technique: rapid, conditional establishment of yeast mutant phenotypes. Molecular Cell 31:925-932. doi: 10.1016/j.molcel.2008.07.020.
-
(2008)
Molecular Cell
, vol.31
, pp. 925-932
-
-
Haruki, H.1
Nishikawa, J.2
Laemmli, U.K.3
-
14
-
-
33750814968
-
Antisense transcription controls cell fate in Saccharomyces cerevisiae
-
Hongay CF, Grisafi PL, Galitski T, Fink GR. 2006. Antisense transcription controls cell fate in Saccharomyces cerevisiae. Cell 127:735-745. doi: 10.1016/j.cell.2006.09.038.
-
(2006)
Cell
, vol.127
, pp. 735-745
-
-
Hongay, C.F.1
Grisafi, P.L.2
Galitski, T.3
Fink, G.R.4
-
15
-
-
56849093493
-
A nc RNA modulates histone modification and m RNA induction in the yeast GAL gene cluster
-
Houseley J, Rubbi L, Grunstein M, Tollervey D, Vogelauer M. 2008. A nc RNA modulates histone modification and m RNA induction in the yeast GAL gene cluster. Molecular Cell 32:685-695. doi: 10.1016/j.molcel. 2008.09.027.
-
(2008)
Molecular Cell
, vol.32
, pp. 685-695
-
-
Houseley, J.1
Rubbi, L.2
Grunstein, M.3
Tollervey, D.4
Vogelauer, M.5
-
16
-
-
34249088350
-
Genome-wide transcription and the implications for genomic organization
-
Kapranov P, Willingham AT, Gingeras TR. 2007. Genome-wide transcription and the implications for genomic organization. Nature Reviews. Genetics 8:413-423. doi: 10.1038/nrg2083.
-
(2007)
Nature Reviews. Genetics
, vol.8
, pp. 413-423
-
-
Kapranov, P.1
Willingham, A.T.2
Gingeras, T.R.3
-
17
-
-
0028017601
-
Chromatin structure modulation in Saccharomyces cerevisiae by centromere and promoter factor 1
-
Kent NA, Tsang JS, Crowther DJ, Mellor J. 1994. Chromatin structure modulation in Saccharomyces cerevisiae by centromere and promoter factor 1. Molecular and Cellular Biology 14:5229-5241.
-
(1994)
Molecular and Cellular Biology
, vol.14
, pp. 5229-5241
-
-
Kent, N.A.1
Tsang, J.S.2
Crowther, D.J.3
Mellor, J.4
-
19
-
-
0242669950
-
Role for antisense RNA in regulating circadian clock function in Neurospora crassa
-
Kramer C, Loros JJ, Dunlap JC, Crosthwaite SK. 2003. Role for antisense RNA in regulating circadian clock function in Neurospora crassa. Nature 421:948-952. doi: 10.1038/nature01427.
-
(2003)
Nature
, vol.421
, pp. 948-952
-
-
Kramer, C.1
Loros, J.J.2
Dunlap, J.C.3
Crosthwaite, S.K.4
-
20
-
-
34547844064
-
SCEPTRANS: An online tool for analyzing periodic transcription in yeast
-
Kudlicki A, Rowicka M, Otwinowski Z. 2007. SCEPTRANS: an online tool for analyzing periodic transcription in yeast. Bioinformatics 23:1559-1561. doi: 10.1093/bioinformatics/btm126.
-
(2007)
Bioinformatics
, vol.23
, pp. 1559-1561
-
-
Kudlicki, A.1
Rowicka, M.2
Otwinowski, Z.3
-
21
-
-
77958559009
-
Behavior of a metabolic cycling population at the single cell level as visualized by fluorescent gene expression reporters
-
Laxman S, Sutter BM, Tu BP. 2010. Behavior of a metabolic cycling population at the single cell level as visualized by fluorescent gene expression reporters. PLOS ONE 5:e12595. doi: 10.1371/journal.pone.0012595.
-
(2010)
PLOS ONE
, vol.5
-
-
Laxman, S.1
Sutter, B.M.2
Tu, B.P.3
-
22
-
-
0038104857
-
Genomic gene clustering analysis of pathways in eukaryotes
-
Lee JM, Sonnhammer EL. 2003. Genomic gene clustering analysis of pathways in eukaryotes. Genome Research 13:875-882. doi: 10.1101/gr.737703.
-
(2003)
Genome Research
, vol.13
, pp. 875-882
-
-
Lee, J.M.1
Sonnhammer, E.L.2
-
23
-
-
0031820288
-
Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
-
Longtine MS, McKenzie A, Demarini DJ, Shah NG, Wach A, Brachat A, Philippsen P, Pringle JR. 1998. Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14:953-961. doi: 10.1002/(SICI)1097-0061(199807)14:103.0.CO;2-U.
-
(1998)
Yeast
, vol.14
, pp. 953-961
-
-
Longtine, M.S.1
McKenzie, A.2
Demarini, D.J.3
Shah, N.G.4
Wach, A.5
Brachat, A.6
Philippsen, P.7
Pringle, J.R.8
-
24
-
-
33645769260
-
An improved map of conserved regulatory sites for Saccharomyces cerevisiae
-
MacIsaac KD, Wang T, Gordon DB, Gifford DK, Stormo GD, Fraenkel E. 2006. An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC Bioinformatics 7:113. doi: 10.1186/1471-2105-7-113.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 113
-
-
McIsaac, K.D.1
Wang, T.2
Gordon, D.B.3
Gifford, D.K.4
Stormo, G.D.5
Fraenkel, E.6
-
25
-
-
2942560254
-
Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene
-
Martens JA, Laprade L, Winston F. 2004. Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene. Nature 429:571-574. doi: 10.1038/nature02538.
-
(2004)
Nature
, vol.429
, pp. 571-574
-
-
Martens, J.A.1
Laprade, L.2
Winston, F.3
-
26
-
-
33846930357
-
Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript
-
Martianov I, Ramadass A, Serra Barros A, Chow N, Akoulitchev A. 2007. Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript. Nature 445:666-670. doi: 10.1038/nature05519.
-
(2007)
Nature
, vol.445
, pp. 666-670
-
-
Martianov, I.1
Ramadass, A.2
Serra Barros, A.3
Chow, N.4
Akoulitchev, A.5
-
27
-
-
80053190826
-
Evidence for a complex of transcription factor IIB with poly(A) polymerase and cleavage factor 1 subunits required for gene looping
-
Medler S, Al Husini N, Raghunayakula S, Mukundan B, Aldea A, Ansari A. 2011. Evidence for a complex of transcription factor IIB with poly(A) polymerase and cleavage factor 1 subunits required for gene looping. The Journal of Biological Chemistry 286:33709-33718. doi: 10.1074/jbc.M110.193870.
-
(2011)
The Journal of Biological Chemistry
, vol.286
, pp. 33709-33718
-
-
Medler, S.1
Al Husini, N.2
Raghunayakula, S.3
Mukundan, B.4
Aldea, A.5
Ansari, A.6
-
28
-
-
0025114068
-
CPF1, a yeast protein which functions in centromeres and promoters
-
Mellor J, Jiang W, Funk M, Rathjen J, Barnes CA, Hinz T, Hegemann JH, Philippsen P. 1990. CPF1, a yeast protein which functions in centromeres and promoters. The EMBO Journal 9:4017-4026.
-
(1990)
The EMBO Journal
, vol.9
, pp. 4017-4026
-
-
Mellor, J.1
Jiang, W.2
Funk, M.3
Rathjen, J.4
Barnes, C.A.5
Hinz, T.6
Hegemann, J.H.7
Philippsen, P.8
-
29
-
-
0021706678
-
Regulation of glutamine-repressible gene products by the GLN3 function in Saccharomyces cerevisiae
-
Mitchell AP, Magasanik B. 1984. Regulation of glutamine-repressible gene products by the GLN3 function in Saccharomyces cerevisiae. Molecular and Cellular Biology 4:2758-2766.
-
(1984)
Molecular and Cellular Biology
, vol.4
, pp. 2758-2766
-
-
Mitchell, A.P.1
Magasanik, B.2
-
30
-
-
20444375490
-
Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription
-
Morillon A, Karabetsou N, Nair A, Mellor J. 2005. Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription. Molecular Cell 18:723-734. doi: 10.1016/j.molcel.2005.05.009.
-
(2005)
Molecular Cell
, vol.18
, pp. 723-734
-
-
Morillon, A.1
Karabetsou, N.2
Nair, A.3
Mellor, J.4
-
31
-
-
0242584447
-
Regulation of elongating RNA polymerase II by forkhead transcription factors in yeast
-
Morillon A, O'Sullivan J, Azad A, Proudfoot N, Mellor J. 2003. Regulation of elongating RNA polymerase II by forkhead transcription factors in yeast. Science 300:492-495. doi: 10.1126/science.1081379.
-
(2003)
Science
, vol.300
, pp. 492-495
-
-
Morillon, A.1
O'Sullivan, J.2
Azad, A.3
Proudfoot, N.4
Mellor, J.5
-
32
-
-
77955452809
-
Long antisense non-coding RNAs and their role in transcription and oncogenesis
-
Morris KV, Vogt PK. 2010. Long antisense non-coding RNAs and their role in transcription and oncogenesis. Cell Cycle 9:2544-2547. doi: 10.4161/cc.9.13.12145.
-
(2010)
Cell Cycle
, vol.9
, pp. 2544-2547
-
-
Morris, K.V.1
Vogt, P.K.2
-
33
-
-
84859335229
-
A pre-initiation complex at the 3'-end of genes drives antisense transcription independent of divergent sense transcription
-
Murray SC, Serra Barros A, Brown DA, Dudek P, Ayling J, Mellor J. 2012. A pre-initiation complex at the 3'-end of genes drives antisense transcription independent of divergent sense transcription. Nucleic Acids Research 40:2432-2444. doi: 10.1093/nar/gkr1121.
-
(2012)
Nucleic Acids Research
, vol.40
, pp. 2432-2444
-
-
Murray, S.C.1
Serra Barros, A.2
Brown, D.A.3
Dudek, P.4
Ayling, J.5
Mellor, J.6
-
34
-
-
4444262632
-
Gene loops juxtapose promoters and terminators in yeast
-
O'Sullivan JM, Tan-Wong SM, Morillon A, Lee B, Coles J, Mellor J, Proudfoot NJ. 2004. Gene loops juxtapose promoters and terminators in yeast. Nature Genetics 36:1014-1018. doi: 10.1038/ng1411.
-
(2004)
Nature Genetics
, vol.36
, pp. 1014-1018
-
-
O'Sullivan, J.M.1
Tan-Wong, S.M.2
Morillon, A.3
Lee, B.4
Coles, J.5
Mellor, J.6
Proudfoot, N.J.7
-
35
-
-
84877574893
-
Extensive transcriptional heterogeneity revealed by isoform profiling
-
Pelechano V, Wei W, Steinmetz LM. 2013. Extensive transcriptional heterogeneity revealed by isoform profiling. Nature 497:127-131. doi: 10.1038/nature12121.
-
(2013)
Nature
, vol.497
, pp. 127-131
-
-
Pelechano, V.1
Wei, W.2
Steinmetz, L.M.3
-
37
-
-
67649550089
-
H3 lysine 4 di-and tri-methylation deposited by cryptic transcription attenuates promoter activation
-
Pinskaya M, Gourvennec S, Morillon A. 2009. H3 lysine 4 di-and tri-methylation deposited by cryptic transcription attenuates promoter activation. The EMBO Journal 28:1697-1707. doi: 10.1038/emboj.2009.108.
-
(2009)
The EMBO Journal
, vol.28
, pp. 1697-1707
-
-
Pinskaya, M.1
Gourvennec, S.2
Morillon, A.3
-
38
-
-
0028019848
-
Characterization of sua7 mutations defines a domain of TFIIB involved in transcription start site selection in yeast
-
Pinto I, Wu WH, Na JG, Hampsey M. 1994. Characterization of sua7 mutations defines a domain of TFIIB involved in transcription start site selection in yeast. The Journal of Biological Chemistry 269:30569-30573.
-
(1994)
The Journal of Biological Chemistry
, vol.269
, pp. 30569-30573
-
-
Pinto, I.1
Wu, W.H.2
Na, J.G.3
Hampsey, M.4
-
39
-
-
78651271733
-
Integrative genomics viewer
-
Robinson JT, Thorvaldsdóttir H, Winckler W, Guttman M, Lander ES, Getz G, Mesirov JP. 2011. Integrative genomics viewer. Nature Biotechnology 29:24-26. doi: 10.1038/nbt.1754.
-
(2011)
Nature Biotechnology
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
Thorvaldsdóttir, H.2
Winckler, W.3
Guttman, M.4
Lander, E.S.5
Getz, G.6
Mesirov, J.P.7
-
40
-
-
77951081705
-
Metabolic cycling in single yeast cells from unsynchronized steady-state populations limited on glucose or phosphate
-
Silverman SJ, Petti AA, Slavov N, Parsons L, Briehof R, Thiberge SY, Zenklusen D, Gandhi SJ, Larson DR, Singer RH, Botstein D. 2010. Metabolic cycling in single yeast cells from unsynchronized steady-state populations limited on glucose or phosphate. Proceedings of the National Academy of Sciences of USA 107:6946-6951. doi: 10.1073/pnas.1002422107.
-
(2010)
Proceedings of the National Academy of Sciences of USA
, vol.107
, pp. 6946-6951
-
-
Silverman, S.J.1
Petti, A.A.2
Slavov, N.3
Parsons, L.4
Briehof, R.5
Thiberge, S.Y.6
Zenklusen, D.7
Gandhi, S.J.8
Larson, D.R.9
Singer, R.H.10
Botstein, D.11
-
42
-
-
64249090531
-
m RNA stability and the unfolding of gene expression in the long-period yeast metabolic cycle
-
Soranzo N, Zampieri M, Farina L, Altafini C. 2009. m RNA stability and the unfolding of gene expression in the long-period yeast metabolic cycle. BMC Systems Biology 3:18. doi: 10.1186/1752-0509-3-18.
-
(2009)
BMC Systems Biology
, vol.3
, pp. 18
-
-
Soranzo, N.1
Zampieri, M.2
Farina, L.3
Altafini, C.4
-
43
-
-
0027972417
-
Sequence and promoter analysis of the highly expressed TEF gene of the filamentous fungus Ashbya gossypii
-
Steiner S, Philippsen P. 1994. Sequence and promoter analysis of the highly expressed TEF gene of the filamentous fungus Ashbya gossypii. Molecular & General Genetics 242:263-271. doi: 10.1007/BF00280415.
-
(1994)
Molecular & General Genetics
, vol.242
, pp. 263-271
-
-
Steiner, S.1
Philippsen, P.2
-
44
-
-
84868193627
-
Gene loops enhance transcriptional directionality
-
Tan-Wong SM, Zaugg JB, Camblong J, Xu Z, Zhang DW, Mischo HE, Ansari AZ, Luscombe NM, Steinmetz LM, Proudfoot NJ. 2012. Gene loops enhance transcriptional directionality. Science 338:671-675. doi: 10.1126/ science.1224350.
-
(2012)
Science
, vol.338
, pp. 671-675
-
-
Tan-Wong, S.M.1
Zaugg, J.B.2
Camblong, J.3
Xu, Z.4
Zhang, D.W.5
Mischo, H.E.6
Ansari, A.Z.7
Luscombe, N.M.8
Steinmetz, L.M.9
Proudfoot, N.J.10
-
45
-
-
84875634162
-
Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
-
Thorvaldsdottir H, Robinson JT, Mesirov JP. 2013. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Briefings in Bioinformatics 14:178-192. doi: 10.1093/bib/bbs017.
-
(2013)
Briefings in Bioinformatics
, vol.14
, pp. 178-192
-
-
Thorvaldsdottir, H.1
Robinson, J.T.2
Mesirov, J.P.3
-
46
-
-
43749088127
-
Two strategies for gene regulation by promoter nucleosomes
-
Tirosh I, Barkai N. 2008. Two strategies for gene regulation by promoter nucleosomes. Genome Research 18:1084-1091. doi: 10.1101/gr.076059.108.
-
(2008)
Genome Research
, vol.18
, pp. 1084-1091
-
-
Tirosh, I.1
Barkai, N.2
-
47
-
-
84455200588
-
Single-molecule m RNA decay measurements reveal promoter-regulated m RNA stability in yeast
-
Trcek T, Larson DR, Moldón A, Query CC, Singer RH. 2011. Single-molecule m RNA decay measurements reveal promoter-regulated m RNA stability in yeast. Cell 147:1484-1497. doi: 10.1016/j.cell.2011.11.051.
-
(2011)
Cell
, vol.147
, pp. 1484-1497
-
-
Trcek, T.1
Larson, D.R.2
Moldón, A.3
Query, C.C.4
Singer, R.H.5
-
48
-
-
80555156654
-
Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization
-
Tsankov A, Yanagisawa Y, Rhind N, Regev A, Rando OJ. 2011. Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization. Genome Research 21:1851-1862. doi: 10.1101/gr.122267.111.
-
(2011)
Genome Research
, vol.21
, pp. 1851-1862
-
-
Tsankov, A.1
Yanagisawa, Y.2
Rhind, N.3
Regev, A.4
Rando, O.J.5
-
49
-
-
27944487902
-
Logic of the yeast metabolic cycle: Temporal compartmentalization of cellular processes
-
Tu BP, Kudlicki A, Rowicka M, McKnight SL. 2005. Logic of the yeast metabolic cycle: temporal compartmentalization of cellular processes. Science 310:1152-1158. doi: 10.1126/science.1120499.
-
(2005)
Science
, vol.310
, pp. 1152-1158
-
-
Tu, B.P.1
Kudlicki, A.2
Rowicka, M.3
McKnight, S.L.4
-
50
-
-
33747591416
-
Metabolic cycles as an underlying basis of biological oscillations
-
Tu BP, McKnight SL. 2006. Metabolic cycles as an underlying basis of biological oscillations. Nature Reviews. Molecular Cell Biology 7:696-701. doi: 10.1038/nrm1980.
-
(2006)
Nature Reviews. Molecular Cell Biology
, vol.7
, pp. 696-701
-
-
Tu, B.P.1
McKnight, S.L.2
-
51
-
-
36749067297
-
Cyclic changes in metabolic state during the life of a yeast cell
-
Tu BP, Mohler RE, Liu JC, Dombek KM, Young ET, Synovec RE, McKnight SL. 2007. Cyclic changes in metabolic state during the life of a yeast cell. Proceedings of the National Academy of Sciences of USA 104:16886-16891. doi: 10.1073/pnas.0708365104.
-
(2007)
Proceedings of the National Academy of Sciences of USA
, vol.104
, pp. 16886-16891
-
-
Tu, B.P.1
Mohler, R.E.2
Liu, J.C.3
Dombek, K.M.4
Young, E.T.5
Synovec, R.E.6
McKnight, S.L.7
-
53
-
-
84866388360
-
Transcription of two long noncoding RNAs mediates mating-type control of Gametogenesis in budding yeast
-
van Werven FJ, Neuert G, Hendrick N, Lardenois A, Buratowski S, van Oudenaarden A, Primig M, Amon A. 2012. Transcription of two long noncoding RNAs mediates mating-type control of Gametogenesis in budding yeast. Cell 150:1170-1181. doi: 10.1016/j.cell.2012.06.049.
-
(2012)
Cell
, vol.150
, pp. 1170-1181
-
-
van Werven, F.J.1
Neuert, G.2
Hendrick, N.3
Lardenois, A.4
Buratowski, S.5
van Oudenaarden, A.6
Primig, M.7
Amon, A.8
-
54
-
-
60349122111
-
A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome
-
Venters BJ, Pugh BF. 2009. A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome. Genome Research 19:360-371. doi: 10.1101/gr.084970.108.
-
(2009)
Genome Research
, vol.19
, pp. 360-371
-
-
Venters, B.J.1
Pugh, B.F.2
-
55
-
-
79951493843
-
A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces
-
Venters BJ, Wachi S, Mavrich TN, Andersen BE, Jena P, Sinnamon AJ, Jain P, Rolleri NS, Jiang C, Hemeryck-Walsh C, Pugh BF. 2011. A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces. Molecular Cell 41:480-492. doi: 10.1016/j.molcel.2011.01.015.
-
(2011)
Molecular Cell
, vol.41
, pp. 480-492
-
-
Venters, B.J.1
Wachi, S.2
Mavrich, T.N.3
Andersen, B.E.4
Jena, P.5
Sinnamon, A.J.6
Jain, P.7
Rolleri, N.S.8
Jiang, C.9
Hemeryck-Walsh, C.10
Pugh, B.F.11
-
56
-
-
84876385823
-
An efficient method for genome-wide polyadenylation site mapping and RNA quantification
-
Wilkening S, Pelechano V, Jarvelin AI, Tekkedil MM, Anders S, Benes V, Steinmetz LM. 2013. An efficient method for genome-wide polyadenylation site mapping and RNA quantification. Nucleic Acids Research 41:e65. doi: 10.1093/nar/gks1249.
-
(2013)
Nucleic Acids Research
, vol.41
-
-
Wilkening, S.1
Pelechano, V.2
Jarvelin, A.I.3
Tekkedil, M.M.4
Anders, S.5
Benes, V.6
Steinmetz, L.M.7
-
57
-
-
79951801979
-
Antisense expression increases gene expression variability and locus interdependency
-
Xu Z, Wei W, Gagneur J, Clauder-Münster S, Smolik M, Huber W, Steinmetz LM. 2011. Antisense expression increases gene expression variability and locus interdependency. Molecular Systems Biology 7:468. doi: 10.1038/msb.2011.1.
-
(2011)
Molecular Systems Biology
, vol.7
, pp. 468
-
-
Xu, Z.1
Wei, W.2
Gagneur, J.3
Clauder-Münster, S.4
Smolik, M.5
Huber, W.6
Steinmetz, L.M.7
-
58
-
-
60549108380
-
Bidirectional promoters generate pervasive transcription in yeast
-
Xu Z, Wei W, Gagneur J, Perocchi F, Clauder-Münster S, Camblong J, Guffanti E, Stutz F, Huber W, Steinmetz LM. 2009. Bidirectional promoters generate pervasive transcription in yeast. Nature 457:1033-1037. doi: 10.1038/ nature07728.
-
(2009)
Nature
, vol.457
, pp. 1033-1037
-
-
Xu, Z.1
Wei, W.2
Gagneur, J.3
Perocchi, F.4
Clauder-Münster, S.5
Camblong, J.6
Guffanti, E.7
Stutz, F.8
Huber, W.9
Steinmetz, L.M.10
-
59
-
-
77956027418
-
Analyzing m RNA expression using single m RNA resolution fluorescent in situ hybridization
-
Zenklusen D, Singer RH. 2010. Analyzing m RNA expression using single m RNA resolution fluorescent in situ hybridization. Methods Enzymology 470:641-659. doi: 10.1016/S0076-6879(10)70026-4.
-
(2010)
Methods Enzymology
, vol.470
, pp. 641-659
-
-
Zenklusen, D.1
Singer, R.H.2
-
60
-
-
0342868306
-
Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth
-
Zhu G, Spellman PT, Volpe T, Brown PO, Botstein D, Davis TN, Futcher B. 2000. Two yeast forkhead genes regulate the cell cycle and pseudohyphal growth. Nature 406:90-94. doi: 10.1038/35017581.
-
(2000)
Nature
, vol.406
, pp. 90-94
-
-
Zhu, G.1
Spellman, P.T.2
Volpe, T.3
Brown, P.O.4
Botstein, D.5
Davis, T.N.6
Futcher, B.7
|