메뉴 건너뛰기




Volumn 5, Issue , 2015, Pages

Dynamic distribution of the gut microbiota and the relationship with apparent crude fiber digestibility and growth stages in pigs

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; ANIMAL FOOD; BACTERIUM; BIODIVERSITY; DIETARY FIBER; DIGESTION; GROWTH, DEVELOPMENT AND AGING; INTESTINE FLORA; METAGENOME; PIG;

EID: 84928404221     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep09938     Document Type: Article
Times cited : (294)

References (40)
  • 1
    • 84866551081 scopus 로고    scopus 로고
    • Microbial shifts in the swine distal gut in response to the treatment with antimicrobial growth promoter, tylosin
    • Kim, H. B. et al. Microbial shifts in the swine distal gut in response to the treatment with antimicrobial growth promoter, tylosin. Proc. Natl. Acad. Sci. U. S. A. 109, 15485-15490 (2012).
    • (2012) Proc. Natl. Acad. Sci. U. S. A. , vol.109 , pp. 15485-15490
    • Kim, H.B.1
  • 2
    • 84862141704 scopus 로고    scopus 로고
    • Human gut microbiome viewed across age and geography
    • Yatsunenko, T. et al. Human gut microbiome viewed across age and geography. Nature 486, 222-227 (2012).
    • (2012) Nature , vol.486 , pp. 222-227
    • Yatsunenko, T.1
  • 3
    • 84904999639 scopus 로고    scopus 로고
    • Bacteria, phages and pigs: The effects of in-feed antibiotics on the microbiome at different gut locations
    • Looft, T. et al. Bacteria, phages and pigs: the effects of in-feed antibiotics on the microbiome at different gut locations. ISME. J 8, 1566-1576 (2014).
    • (2014) ISME. J , vol.8 , pp. 1566-1576
    • Looft, T.1
  • 4
    • 2942691956 scopus 로고    scopus 로고
    • Getting a grip on things: How do communities of bacterial symbionts become established in our intestine?
    • Sonnenburg, J. L., Angenent, L. T. & Gordon, J. I. Getting a grip on things: how do communities of bacterial symbionts become established in our intestine? Nat. Immunol. 5, 569-573 (2004).
    • (2004) Nat. Immunol. , vol.5 , pp. 569-573
    • Sonnenburg, J.L.1    Angenent, L.T.2    Gordon, J.I.3
  • 6
    • 0018342493 scopus 로고
    • Types and distribution of anaerobic bacteria in the large intestine of pigs
    • Russell, E. G. Types and distribution of anaerobic bacteria in the large intestine of pigs. Appl. Environ. Microb. 37, 187-193 (1979).
    • (1979) Appl. Environ. Microb. , vol.37 , pp. 187-193
    • Russell, E.G.1
  • 7
    • 84875805989 scopus 로고    scopus 로고
    • The intestinal microbiome of the pig
    • Isaacson, R. & Kim, H. B. The intestinal microbiome of the pig. Anim. Health Res. Rev. 13, 100-109 (2012).
    • (2012) Anim. Health Res. Rev. , vol.13 , pp. 100-109
    • Isaacson, R.1    Kim, H.B.2
  • 8
  • 9
    • 33645110636 scopus 로고    scopus 로고
    • Molecular characterization of the bacteria adherent to human colorectal mucosa
    • Green, G. L. et al. Molecular characterization of the bacteria adherent to human colorectal mucosa. J. Appl. Microbiol. 100, 460-469 (2006).
    • (2006) J. Appl. Microbiol. , vol.100 , pp. 460-469
    • Green, G.L.1
  • 10
    • 83655181087 scopus 로고    scopus 로고
    • Bacteria and host interactions in the gut epithelial barrier
    • Ashida, H., Ogawa, M., Kim, M., Mimuro, H. & Sasakawa, C. Bacteria and host interactions in the gut epithelial barrier. Nat. Chem. Biol. 8, 36-45 (2012).
    • (2012) Nat. Chem. Biol. , vol.8 , pp. 36-45
    • Ashida, H.1    Ogawa, M.2    Kim, M.3    Mimuro, H.4    Sasakawa, C.5
  • 12
    • 79957902145 scopus 로고    scopus 로고
    • Gut microbiome, obesity, and metabolic dysfunction
    • Tilg, H. & Kaser, A. Gut microbiome, obesity, and metabolic dysfunction. J. Clin. Invest. 121, 2126-2132 (2011).
    • (2011) J. Clin. Invest. , vol.121 , pp. 2126-2132
    • Tilg, H.1    Kaser, A.2
  • 13
    • 80052550284 scopus 로고    scopus 로고
    • Longitudinal investigation of the age-related bacterial diversity in the feces of commercial pigs
    • Kim, H. B. et al. Longitudinal investigation of the age-related bacterial diversity in the feces of commercial pigs. Vet. Microbiol. 153, 124-133 (2011).
    • (2011) Vet. Microbiol. , vol.153 , pp. 124-133
    • Kim, H.B.1
  • 14
    • 84896827662 scopus 로고    scopus 로고
    • Bacterial communities in manures of piglets and adult pigs bred with different feeds revealed by 16S rDNA 454 pyrosequencing
    • Lu, X. M., Lu, P. Z. & Zhang, H. Bacterial communities in manures of piglets and adult pigs bred with different feeds revealed by 16S rDNA 454 pyrosequencing. Appl. Microbiol. Biot. 98, 2657-2665 (2014).
    • (2014) Appl. Microbiol. Biot. , vol.98 , pp. 2657-2665
    • Lu, X.M.1    Lu, P.Z.2    Zhang, H.3
  • 15
    • 79955794476 scopus 로고    scopus 로고
    • Comparative fecal metagenomics unveils unique functional capacity of the swine gut
    • Lamendella, R., Domingo, J. W., Ghosh, S., Martinson, J. & Oerther, D. B. Comparative fecal metagenomics unveils unique functional capacity of the swine gut. BMC. Microbiol. 11, 103 (2011).
    • (2011) BMC. Microbiol. , vol.11 , pp. 103
    • Lamendella, R.1    Domingo, J.W.2    Ghosh, S.3    Martinson, J.4    Oerther, D.B.5
  • 16
    • 84878819687 scopus 로고    scopus 로고
    • Bacterial communities in different sections of a municipal wastewater treatment plant revealed by 16S rDNA 454 pyrosequencing
    • Ye, L. & Zhang, T. Bacterial communities in different sections of a municipal wastewater treatment plant revealed by 16S rDNA 454 pyrosequencing. Appl. Microbiol. Biot. 97, 2681-2690 (2013).
    • (2013) Appl. Microbiol. Biot. , vol.97 , pp. 2681-2690
    • Ye, L.1    Zhang, T.2
  • 17
    • 0035189211 scopus 로고    scopus 로고
    • Characterisation and comparison of microbial populations inswine faeces and manure storage pits by16S rDNA Gene Sequence Analyses
    • Whitehead, T. R. & Cotta, M. A. Characterisation and comparison of microbial populations inswine faeces and manure storage pits by16S rDNA Gene Sequence Analyses. Anaerobe 7, 181-187 (2001).
    • (2001) Anaerobe , vol.7 , pp. 181-187
    • Whitehead, T.R.1    Cotta, M.A.2
  • 18
    • 0017341656 scopus 로고
    • Microbial ecology of the gastrointestinal tract
    • Savage, D. C. Microbial ecology of the gastrointestinal tract. Annu. Rev. Microbiol. 31, 107-133 (1977).
    • (1977) Annu. Rev. Microbiol. , vol.31 , pp. 107-133
    • Savage, D.C.1
  • 20
    • 67651151152 scopus 로고    scopus 로고
    • The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age
    • Mariat, D. et al. The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age. BMC. Microbiol. 9, 123 (2009).
    • (2009) BMC. Microbiol. , vol.9 , pp. 123
    • Mariat, D.1
  • 21
    • 20544444045 scopus 로고    scopus 로고
    • Diversity of the human intestinal microbial flora
    • Eckburg, P. B. et al. Diversity of the human intestinal microbial flora. Science 308, 1635-1638 (2005).
    • (2005) Science , vol.308 , pp. 1635-1638
    • Eckburg, P.B.1
  • 22
    • 70349339085 scopus 로고    scopus 로고
    • Solitalea koreensis gen. Nov., sp. Nov and the reclassification of [Flexibacter] canadensis as Solitalea canadensis comb. Nov
    • Weon, H. Y. et al. Solitalea koreensis gen. nov., sp. nov. and the reclassification of [Flexibacter] canadensis as Solitalea canadensis comb. nov. Int. J. Syst. Evol. Micr. 59, 1969-1975 (2009).
    • (2009) Int. J. Syst. Evol. Micr. , vol.59 , pp. 1969-1975
    • Weon, H.Y.1
  • 23
    • 34648847012 scopus 로고    scopus 로고
    • Porphyrobacter meromictius sp. Nov., an appendaged bacterium, that produces Bacteriochlorophyll a
    • Rathgeber, C. et al. Porphyrobacter meromictius sp. nov., an appendaged bacterium, that produces Bacteriochlorophyll a. Curr. Microbiol. 55, 356-361 (2007).
    • (2007) Curr. Microbiol. , vol.55 , pp. 356-361
    • Rathgeber, C.1
  • 24
    • 79959467647 scopus 로고    scopus 로고
    • Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans
    • Jumpertz, R. et al. Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans. Am. J. Clin. Nutr. 94, 58-65 (2011).
    • (2011) Am. J. Clin. Nutr. , vol.94 , pp. 58-65
    • Jumpertz, R.1
  • 25
    • 0006014959 scopus 로고
    • Further studies on the isolation of proteolytic bacteria from the sheep rumen
    • Blackburn, T. H. & Hobson, P. N. Further studies on the isolation of proteolytic bacteria from the sheep rumen. J. Gen. Microbiol. 29, 69-81 (1962).
    • (1962) J. Gen. Microbiol. , vol.29 , pp. 69-81
    • Blackburn, T.H.1    Hobson, P.N.2
  • 26
    • 0020512863 scopus 로고
    • Isolation of proteolytic rumen bacteria by use of selective medium containing leaf fraction 1 protein
    • Geoffrey, P. H., Colin, G. O., Yvonne, G. & Margaret, E. B. Isolation of proteolytic rumen bacteria by use of selective medium containing leaf fraction 1 protein. Appl. Environ. Microbiol. 45, 1780-1784 (1983).
    • (1983) Appl. Environ. Microbiol. , vol.45 , pp. 1780-1784
    • Geoffrey, P.H.1    Colin, G.O.2    Yvonne, G.3    Margaret, E.B.4
  • 27
    • 0024388380 scopus 로고
    • Degradation of barley straw, ryegrass, and alfalfa cell walls by Clostridium longisporum and Ruminococcus albus
    • Varel, V. H., Richardson, A. J. & Stewart, C. S. Degradation of barley straw, ryegrass, and alfalfa cell walls by Clostridium longisporum and Ruminococcus albus. Appl. Environ. Microbiol. 55, 3080-3084 (1989).
    • (1989) Appl. Environ. Microbiol. , vol.55 , pp. 3080-3084
    • Varel, V.H.1    Richardson, A.J.2    Stewart, C.S.3
  • 28
    • 84880368918 scopus 로고    scopus 로고
    • Structural modulation of gut microbiota in life-long calorie-restricted mice
    • Zhang, C. et al. Structural modulation of gut microbiota in life-long calorie-restricted mice. Nat. Commun. 4, 2163 (2013).
    • (2013) Nat. Commun. , vol.4 , pp. 2163
    • Zhang, C.1
  • 29
    • 84908319952 scopus 로고    scopus 로고
    • A splice mutation in the PHKG1 gene causes high glycogen content and low meat quality in pig skeletal muscle
    • Ma, JW. et al. A splice mutation in the PHKG1 gene causes high glycogen content and low meat quality in pig skeletal muscle. PLoS. Genet. 10, e1004710 ( 2014).
    • (2014) PLoS. Genet. , vol.10 , pp. e1004710
    • Ma, J.W.1
  • 30
    • 84878384825 scopus 로고    scopus 로고
    • Genome-wide association study of meat quality traits in a white Duroc3Erhualian F2 intercross and Chinese Sutai pigs
    • Ma, JW. et al. Genome-wide association study of meat quality traits in a white Duroc3Erhualian F2 intercross and Chinese Sutai pigs. PLoS. One 8, e64047 (2013).
    • (2013) PLoS. One , vol.8 , pp. e64047
    • Ma, J.W.1
  • 31
    • 84899135339 scopus 로고    scopus 로고
    • Genome-wide association studies for hematological traits in Chinese Sutai pigs
    • Zhang, F. et al. Genome-wide association studies for hematological traits in Chinese Sutai pigs. BMC. Genetics 15, 41 (2014).
    • (2014) BMC. Genetics , vol.15 , pp. 41
    • Zhang, F.1
  • 32
    • 84897557114 scopus 로고    scopus 로고
    • Body weight selection affects quantitative genetic correlated responses in gut microbiota
    • Meng, H. et al. Body weight selection affects quantitative genetic correlated responses in gut microbiota. PLoS. One 9, e89862 (2014).
    • (2014) PLoS. One , vol.9 , pp. e89862
    • Meng, H.1
  • 33
    • 68549130740 scopus 로고    scopus 로고
    • Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys
    • Youssef, N. et al. Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys. Appl. Environ. Microbiol. 75, 5227-5236 (2009).
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 5227-5236
    • Youssef, N.1
  • 34
    • 84863288435 scopus 로고    scopus 로고
    • Using the RDP classifier to predict taxonomic novelty and reduce the search space for finding novel organisms
    • Lan, Y. M., Wang, Q., James, R. C. & Rosen, G. L. Using the RDP classifier to predict taxonomic novelty and reduce the search space for finding novel organisms. PloS. one 7 e32491 (2012).
    • (2012) PloS. One , vol.7 , pp. e32491
    • Lan, Y.M.1    Wang, Q.2    James, R.C.3    Rosen, G.L.4
  • 35
    • 84875695454 scopus 로고    scopus 로고
    • Impact of fibre intake and fibre source on digestibility, gut development, retention time and growth performance of indigenous and exotic pigs
    • Ngoc, T. T., Len, N. T. & Lindberg, J. E. Impact of fibre intake and fibre source on digestibility, gut development, retention time and growth performance of indigenous and exotic pigs. Animal 7, 736-745 (2013).
    • (2013) Animal , vol.7 , pp. 736-745
    • Ngoc, T.T.1    Len, N.T.2    Lindberg, J.E.3
  • 36
    • 0242466149 scopus 로고    scopus 로고
    • Method for measuring ileal amino acid digestibility in pigs
    • [D'Mello, J. P. F. (ed.) (CAB Direct
    • Sauer, W. C., Fan, M. Z., Mosenthin, R. & Drochner, W. [Method for measuring ileal amino acid digestibility in pigs] Farm animal metabolism and nutrition [D'Mello, J. P. F. (ed.)] [279-306] (CAB Direct, 2000).
    • (2000) Farm Animal Metabolism and Nutrition , pp. 279-306
    • Sauer, W.C.1    Fan, M.Z.2    Mosenthin, R.3    Drochner, W.4
  • 37
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso, J. G. et al. QIIME allows analysis of high-throughput community sequencing data. Nat. Methods 7, 335-336 (2010).
    • (2010) Nat. Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1
  • 38
    • 58149200948 scopus 로고    scopus 로고
    • The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
    • Cole, J. R. et al. The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res. 37, D141-145 (2009).
    • (2009) Nucleic Acids Res. , vol.37 , pp. D141-145
    • Cole, J.R.1
  • 39
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss, P. D. et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75, 7537-7541 (2012).
    • (2012) Appl. Environ. Microbiol. , vol.75 , pp. 7537-7541
    • Schloss, P.D.1
  • 40
    • 84901611011 scopus 로고    scopus 로고
    • Deep 16S rRNA pyrosequencing reveals a bacterial community associated with banana Fusarium Wilt disease suppression induced by bio-organic fertilizer application
    • Shen, Z. et al. Deep 16S rRNA pyrosequencing reveals a bacterial community associated with banana Fusarium Wilt disease suppression induced by bio-organic fertilizer application. PLoS. One 9, e98420 (2014).
    • (2014) PLoS. One , vol.9 , pp. e98420
    • Shen, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.