-
1
-
-
77953095629
-
Independent filtering increases detection power for high-throughput experiments
-
Bourgon R, Gentleman R, Huber W: Independent filtering increases detection power for high-throughput experiments. Proc Natl Acad Sci U S A 2010,107(21):9546-9551.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, Issue.21
, pp. 9546-9551
-
-
Bourgon, R.1
Gentleman, R.2
Huber, W.3
-
2
-
-
35748932917
-
A review of feature selection techniques in bioinformatics
-
Saeys Y, Inza I, Larranaga P: A review of feature selection techniques in bioinformatics. Bioinformatics 2007,23(19):2507-2517.
-
(2007)
Bioinformatics
, vol.23
, Issue.19
, pp. 2507-2517
-
-
Saeys, Y.1
Inza, I.2
Larranaga, P.3
-
3
-
-
52649085237
-
Novel molecular subtypes of serous and endometrioid ovarian cancer linked to
-
Tothill RW, Tinker AV, George J, Brown R, Fox SB, Lade S, Johnson DS, Trivett MK, Etemadmoghadam D, Locandro B, Traficante N, Fereday S, Hung JA, Chiew YE, Haviv I, Gertig D, DeFazio A, Bowtell DD: Novel molecular subtypes of serous and endometrioid ovarian cancer linked to. Clin Cancer Res 2008,14(16):5198-5208.
-
(2008)
Clin Cancer Res
, vol.14
, Issue.16
, pp. 5198-5208
-
-
Tothill, R.W.1
Tinker, A.V.2
George, J.3
Brown, R.4
Fox, S.B.5
Lade, S.6
Johnson, D.S.7
Trivett, M.K.8
Etemadmoghadam, D.9
Locandro, B.10
Traficante, N.11
Fereday, S.12
Hung, J.A.13
Chiew, Y.E.14
Haviv, I.15
Gertig, D.16
DeFazio, A.17
Bowtell, D.D.18
-
4
-
-
70349730070
-
MULTI-K: accurate classification of microarray subtypes using ensemble k-means
-
Kim EY, Kim SY, Ashlock D, Nam D: MULTI-K: accurate classification of microarray subtypes using ensemble k-means. BMC Bioinformatics 2009, 10:260.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 260
-
-
Kim, E.Y.1
Kim, S.Y.2
Ashlock, D.3
Nam, D.4
-
5
-
-
52949118548
-
Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions
-
Houseman EA, Christensen BC, Yeh RF, Marsit CJ, Karagas MR, Wrensch M, Nelson HH, Wiemels J, Zheng S, Wiencke JK, Kelsey KT: Model-based clustering of DNA methylation array data: a recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions. BMC Bioinformatics 2008, 9:365.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 365
-
-
Houseman, E.A.1
Christensen, B.C.2
Yeh, R.F.3
Marsit, C.J.4
Karagas, M.R.5
Wrensch, M.6
Nelson, H.H.7
Wiemels, J.8
Zheng, S.9
Wiencke, J.K.10
Kelsey, K.T.11
-
6
-
-
84860637797
-
DNA methylation arrays as surrogate measures of cell mixture distribution
-
Houseman EA, Accomando WP, Koestler DC, Christensen BC, Marsit CJ, Nelson HH, Wiencke JK, Kelsey KT: DNA methylation arrays as surrogate measures of cell mixture distribution. BMC Bioinformatics 2012, 13:86.
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 86
-
-
Houseman, E.A.1
Accomando, W.P.2
Koestler, D.C.3
Christensen, B.C.4
Marsit, C.J.5
Nelson, H.H.6
Wiencke, J.K.7
Kelsey, K.T.8
-
7
-
-
84880969686
-
Blood-based profiles of DNA methylation predict the underlying distribution of cell types: a validation analysis
-
Koestler DC, Christensen B, Karagas MR, Marsit CJ, Langevin SM, Kelsey KT, Wiencke JK, Houseman EA: Blood-based profiles of DNA methylation predict the underlying distribution of cell types: a validation analysis. Epigenetics 2013,8(8):816-826.
-
(2013)
Epigenetics
, vol.8
, Issue.8
, pp. 816-826
-
-
Koestler, D.C.1
Christensen, B.2
Karagas, M.R.3
Marsit, C.J.4
Langevin, S.M.5
Kelsey, K.T.6
Wiencke, J.K.7
Houseman, E.A.8
-
8
-
-
84864359044
-
Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility
-
Reinius LE, Acevedo N, Joerink M, Pershagen G, Dahlen SE, Greco D, Soderhall C, Scheynius A, Kere J: Differential DNA methylation in purified human blood cells: implications for cell lineage and studies on disease susceptibility. PloS one 2012,7(7):e41361.
-
(2012)
PloS one
, vol.7
, Issue.7
, pp. e41361
-
-
Reinius, L.E.1
Acevedo, N.2
Joerink, M.3
Pershagen, G.4
Dahlen, S.E.5
Greco, D.6
Soderhall, C.7
Scheynius, A.8
Kere, J.9
-
9
-
-
77952108366
-
Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma
-
Noushmehr H, Weisenberger DJ, Diefes K, Phillips HS, Pujara K, Berman BP, Pan F, Pelloski CE, Sulman EP, Bhat KP, Verhaak RGW, Hoadley KA, Hayes DN, Perou CM, Schmidt HK, Ding L, Wilson RK, Van Den Berg D, Shen H, Bengtsson H, Neuvial P, Cope LM, Buckley J, Herman JG, Baylin SB, Laird PW, Aldape K: Identification of a CpG island methylator phenotype that defines a distinct subgroup of glioma. Cancer Cell 2010, 17:510-522.
-
(2010)
Cancer Cell
, vol.17
, pp. 510-522
-
-
Noushmehr, H.1
Weisenberger, D.J.2
Diefes, K.3
Phillips, H.S.4
Pujara, K.5
Berman, B.P.6
Pan, F.7
Pelloski, C.E.8
Sulman, E.P.9
Bhat, K.P.10
Verhaak, R.G.W.11
Hoadley, K.A.12
Hayes, D.N.13
Perou, C.M.14
Schmidt, H.K.15
Ding, L.16
Wilson, R.K.17
Van Den Berg, D.18
Shen, H.19
Bengtsson, H.20
Neuvial, P.21
Cope, L.M.22
Buckley, J.23
Herman, J.G.24
Baylin, S.B.25
Laird, P.W.26
Aldape, K.27
more..
-
10
-
-
33745541234
-
CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer
-
Weisenberger DJ, Siegmund KD, Campan M, Young J, Long TI, Faasse MA, Kang GH, Widschwendter M, Weener D, Buchanan D, Koh H, Simms L, Barker M, Leggett B, Levine J, Kim M, French AJ, Thibodeau SN, Jass J, Haile R, Laird PW: CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer. Nat Genet 2006, 38:787-793.
-
(2006)
Nat Genet
, vol.38
, pp. 787-793
-
-
Weisenberger, D.J.1
Siegmund, K.D.2
Campan, M.3
Young, J.4
Long, T.I.5
Faasse, M.A.6
Kang, G.H.7
Widschwendter, M.8
Weener, D.9
Buchanan, D.10
Koh, H.11
Simms, L.12
Barker, M.13
Leggett, B.14
Levine, J.15
Kim, M.16
French, A.J.17
Thibodeau, S.N.18
Jass, J.19
Haile, R.20
Laird, P.W.21
more..
-
11
-
-
78649475003
-
Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis
-
Du P, Zhang X, Huang CC, Jafari N, Kibbe WA, Hou L, Lin SM: Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis. BMC Bioinformatics 2010, 11:587.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 587
-
-
Du, P.1
Zhang, X.2
Huang, C.C.3
Jafari, N.4
Kibbe, W.A.5
Hou, L.6
Lin, S.M.7
-
12
-
-
1542722922
-
On the beta transformation family
-
Rocke DM: On the beta transformation family. Technometrics 1993, 35:72-81.
-
(1993)
Technometrics
, vol.35
, pp. 72-81
-
-
Rocke, D.M.1
-
13
-
-
80053304450
-
High density DNA methylation array with single CpG site resolution
-
Bibikova M, Barnes B, Tsan C, Ho V, Klotzle B, Le JM, Delano D, Zhang L, Schroth GP, Gunderson KL, Fan JB, Shen R: High density DNA methylation array with single CpG site resolution. Genomics 2011,98(4):288-295.
-
(2011)
Genomics
, vol.98
, Issue.4
, pp. 288-295
-
-
Bibikova, M.1
Barnes, B.2
Tsan, C.3
Ho, V.4
Klotzle, B.5
Le, J.M.6
Delano, D.7
Zhang, L.8
Schroth, G.P.9
Gunderson, K.L.10
Fan, J.B.11
Shen, R.12
-
14
-
-
0002643986
-
The dip test of unimodality
-
Hartigan J, Hartigan P: The dip test of unimodality. Ann Stat 1985, 13:70-84.
-
(1985)
Ann Stat
, vol.13
, pp. 70-84
-
-
Hartigan, J.1
Hartigan, P.2
-
15
-
-
79959838081
-
Integrated genomic analyses of ovarian carcinoma
-
Bell D, Berchuck A, Birrer M, Chien J, Cramer D, Dao F, Dhir R, DiSaia P, Gabra H, Glenn P, Godwin A, Gross J, Hartmann L, Huang M, Huntsman D, Iacocca M, Imielinski M, Kalloger S, Karlan B, Levine D, Mills G, Morrison C, Mutch D, Olvera N, Orsulic S, Park K, Petrelli N, Rabeno B, Rader J, Sikic B, et al.: Integrated genomic analyses of ovarian carcinoma. Nature 2011,474(7353):609-615.
-
(2011)
Nature
, vol.474
, Issue.7353
, pp. 609-615
-
-
Bell, D.1
Berchuck, A.2
Birrer, M.3
Chien, J.4
Cramer, D.5
Dao, F.6
Dhir, R.7
DiSaia, P.8
Gabra, H.9
Glenn, P.10
Godwin, A.11
Gross, J.12
Hartmann, L.13
Huang, M.14
Huntsman, D.15
Iacocca, M.16
Imielinski, M.17
Kalloger, S.18
Karlan, B.19
Levine, D.20
Mills, G.21
Morrison, C.22
Mutch, D.23
Olvera, N.24
Orsulic, S.25
Park, K.26
Petrelli, N.27
Rabeno, B.28
Rader, J.29
Sikic, B.30
more..
-
16
-
-
84897022815
-
Comprehensive molecular characterization of urothelial bladder carcinoma
-
Weinstein JN, Akbani R, Broom BM, Wang W, Verhaak RG, McConkey D, Lerner S, Morgan M, Creighton CJ, Smith C, Kwiatkowski DJ, Cherniack AD, Kim J, Sekhar Pedamallu C, Noble MS, Al-Ahmadie HA, Reuter VE, Rosenberg JE, Bajorin DF, Bochner BH, Solit DB, Koppie T, Robinson B, Gordenin DA, Fargo D, Klimczak LJ, Roberts SA, Au J, Laird PW, Hinoue T, et al.: Comprehensive molecular characterization of urothelial bladder carcinoma. Nature 2014,507(7492):315-322.
-
(2014)
Nature
, vol.507
, Issue.7492
, pp. 315-322
-
-
Weinstein, J.N.1
Akbani, R.2
Broom, B.M.3
Wang, W.4
Verhaak, R.G.5
McConkey, D.6
Lerner, S.7
Morgan, M.8
Creighton, C.J.9
Smith, C.10
Kwiatkowski, D.J.11
Cherniack, A.D.12
Kim, J.13
Sekhar Pedamallu, C.14
Noble, M.S.15
Al-Ahmadie, H.A.16
Reuter, V.E.17
Rosenberg, J.E.18
Bajorin, D.F.19
Bochner, B.H.20
Solit, D.B.21
Koppie, T.22
Robinson, B.23
Gordenin, D.A.24
Fargo, D.25
Klimczak, L.J.26
Roberts, S.A.27
Au, J.28
Laird, P.W.29
Hinoue, T.30
more..
-
17
-
-
84876538609
-
Low-level processing of illumina infinium DNA methylation BeadArrays
-
Triche TJ Jr, Weisenberger DJ, Van Den Berg D, Laird PW, Siegmund KD: Low-level processing of illumina infinium DNA methylation BeadArrays. Nucleic Acids Res 2013,41(7):e90.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.7
, pp. e90
-
-
Triche, T.J.1
Weisenberger, D.J.2
Van Den Berg, D.3
Laird, P.W.4
Siegmund, K.D.5
-
18
-
-
84872564830
-
A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data
-
Teschendorff AE, Marabita F, Lechner M, Bartlett T, Tegner J, Gomez-Cabrero D, Beck S: A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data. Bioinformatics 2013,29(2):189-196.
-
(2013)
Bioinformatics
, vol.29
, Issue.2
, pp. 189-196
-
-
Teschendorff, A.E.1
Marabita, F.2
Lechner, M.3
Bartlett, T.4
Tegner, J.5
Gomez-Cabrero, D.6
Beck, S.7
-
19
-
-
84893831447
-
Taxonomy of breast cancer based on normal cell phenotype predicts outcome
-
Santagata S, Thakkar A, Ergonul A, Wang B, Woo T, Hu R, Harrell JC, McNamara G, Schwede M, Culhane AC, Kindelberger D, Rodig S, Richardson A, Schnitt SJ, Tamimi RM, Ince TA: Taxonomy of breast cancer based on normal cell phenotype predicts outcome. J Clin Invest 2014,124(2):859-870.
-
(2014)
J Clin Invest
, vol.124
, Issue.2
, pp. 859-870
-
-
Santagata, S.1
Thakkar, A.2
Ergonul, A.3
Wang, B.4
Woo, T.5
Hu, R.6
Harrell, J.C.7
McNamara, G.8
Schwede, M.9
Culhane, A.C.10
Kindelberger, D.11
Rodig, S.12
Richardson, A.13
Schnitt, S.J.14
Tamimi, R.M.15
Ince, T.A.16
|