-
1
-
-
0025234494
-
Guilt by association: HLA-B27 and ankylosing spondylitis
-
Benjamin, R., and Parham, P. (1990) Guilt by association: HLA-B27 and ankylosing spondylitis. Immunol. Today 11, 137-142
-
(1990)
Immunol. Today
, vol.11
, pp. 137-142
-
-
Benjamin, R.1
Parham, P.2
-
2
-
-
84884414051
-
HLA-B27 misfolding and ankylosing spondylitis
-
Colbert, R. A., Tran, T. M., and Layh-Schmitt, G. (2014) HLA-B27 misfolding and ankylosing spondylitis. Mol. Immunol. 57, 44-51
-
(2014)
Mol. Immunol.
, vol.57
, pp. 44-51
-
-
Colbert, R.A.1
Tran, T.M.2
Layh-Schmitt, G.3
-
3
-
-
84884416127
-
The biochemistry and immunology of non-canonical forms of HLA-B27
-
Shaw, J., Hatano, H., and Kollnberger, S. (2014) The biochemistry and immunology of non-canonical forms of HLA-B27. Mol. Immunol. 57, 52-58
-
(2014)
Mol. Immunol.
, vol.57
, pp. 52-58
-
-
Shaw, J.1
Hatano, H.2
Kollnberger, S.3
-
4
-
-
0037352755
-
Lymphoblastoid cells express HLA-B27 homodimers both intracellularly and at the cell surface following endosomal recycling
-
Bird, L. A., Peh, C. A., Kollnberger, S., Elliott, T., McMichael, A. J., and Bowness, P. (2003) Lymphoblastoid cells express HLA-B27 homodimers both intracellularly and at the cell surface following endosomal recycling. Eur. J. Immunol. 33, 748-759
-
(2003)
Eur. J. Immunol.
, vol.33
, pp. 748-759
-
-
Bird, L.A.1
Peh, C.A.2
Kollnberger, S.3
Elliott, T.4
McMichael, A.J.5
Bowness, P.6
-
5
-
-
69449086287
-
HLA-B27 misfolding and the unfolded protein response augment interleukin-23 production and are associated with Th17 activation in transgenic rats
-
DeLay, M. L., Turner, M. J., Klenk, E. I., Smith, J. A., Sowders, D. P., and Colbert, R. A. (2009) HLA-B27 misfolding and the unfolded protein response augment interleukin-23 production and are associated with Th17 activation in transgenic rats. Arthritis Rheum. 60, 2633-2643
-
(2009)
Arthritis Rheum.
, vol.60
, pp. 2633-2643
-
-
DeLay, M.L.1
Turner, M.J.2
Klenk, E.I.3
Smith, J.A.4
Sowders, D.P.5
Colbert, R.A.6
-
6
-
-
79951835541
-
Th17 cells expressing KIR3DL2+ and responsive to HLA-B27 homodimers are increased in ankylosing spondylitis
-
Bowness, P., Ridley, A., Shaw, J., Chan, A. T., Wong-Baeza, I., Fleming, M., Cummings, F., McMichael, A., and Kollnberger, S. (2011) Th17 cells expressing KIR3DL2+ and responsive to HLA-B27 homodimers are increased in ankylosing spondylitis. J. Immunol. 186, 2672-2680
-
(2011)
J. Immunol.
, vol.186
, pp. 2672-2680
-
-
Bowness, P.1
Ridley, A.2
Shaw, J.3
Chan, A.T.4
Wong-Baeza, I.5
Fleming, M.6
Cummings, F.7
McMichael, A.8
Kollnberger, S.9
-
7
-
-
0030060392
-
T cells, but not thymic exposure to HLA-B27, are required for the inflammatory disease of HLA-B27 transgenic rats
-
Breban, M., Fernandez-Sueiro, J. L., Richardson, J. A., Hadavand, R. R., Maika, S. D., Hammer, R. E., and Taurog, J. D. (1996) T cells, but not thymic exposure to HLA-B27, are required for the inflammatory disease of HLA-B27 transgenic rats. J. Immunol. 156, 794-803
-
(1996)
J. Immunol.
, vol.156
, pp. 794-803
-
-
Breban, M.1
Fernandez-Sueiro, J.L.2
Richardson, J.A.3
Hadavand, R.R.4
Maika, S.D.5
Hammer, R.E.6
Taurog, J.D.7
-
8
-
-
0037438486
-
CD8αβ T cells are not essential to the pathogenesis of arthritis or colitis in HLA-B27 transgenic rats
-
May, E., Dorris, M. L., Satumtira, N., Iqbal, I., Rehman, M. I., Lightfoot, E., and Taurog, J. D. (2003) CD8αβ T cells are not essential to the pathogenesis of arthritis or colitis in HLA-B27 transgenic rats. J. Immunol. 170, 1099-1105
-
(2003)
J. Immunol.
, vol.170
, pp. 1099-1105
-
-
May, E.1
Dorris, M.L.2
Satumtira, N.3
Iqbal, I.4
Rehman, M.I.5
Lightfoot, E.6
Taurog, J.D.7
-
9
-
-
84884411389
-
Genetics of ankylosing spondylitis
-
Robinson, P. C., and Brown, M. A. (2014) Genetics of ankylosing spondylitis. Mol. Immunol. 57, 2-11
-
(2014)
Mol. Immunol.
, vol.57
, pp. 2-11
-
-
Robinson, P.C.1
Brown, M.A.2
-
10
-
-
84884412625
-
HLA-B27 and antigen presentation: At the crossroads between immune defense and autoimmunity
-
Sorrentino, R., Bockmann, R. A., and Fiorillo, M. T. (2014) HLA-B27 and antigen presentation: at the crossroads between immune defense and autoimmunity. Mol. Immunol. 57, 22-27
-
(2014)
Mol. Immunol.
, vol.57
, pp. 22-27
-
-
Sorrentino, R.1
Bockmann, R.A.2
Fiorillo, M.T.3
-
11
-
-
43849110108
-
Peptides: The cornerstone of HLA-B27 biology and pathogenetic role in spondyloarthritis
-
Marcilla, M., and Lopez de Castro, J. A. (2008). Peptides: the cornerstone of HLA-B27 biology and pathogenetic role in spondyloarthritis. Tissue Antigens 71, 495-506
-
(2008)
Tissue Antigens
, vol.71
, pp. 495-506
-
-
Marcilla, M.1
Lopez De Castro, J.A.2
-
12
-
-
0037015624
-
ERAAP customizes peptides for MHC class I molecules in the endoplasmic reticulum
-
Serwold, T., Gonzalez, F., Kim, J., Jacob, R., and Shastri, N. (2002) ERAAP customizes peptides for MHC class I molecules in the endoplasmic reticulum. Nature 419, 480-483
-
(2002)
Nature
, vol.419
, pp. 480-483
-
-
Serwold, T.1
Gonzalez, F.2
Kim, J.3
Jacob, R.4
Shastri, N.5
-
13
-
-
0036902105
-
An IFN-gamma-induced aminopeptidase in the ER, ERAP1, trims precursors to MHC class I-presented peptides
-
Saric, T., Chang, S. C., Hattori, A., York, I. A., Markant, S., Rock, K. L., Tsujimoto, M., and Goldberg, A. L. (2002) An IFN-gamma-induced aminopeptidase in the ER, ERAP1, trims precursors to MHC class I-presented peptides. Nat. Immunol. 3, 1169-1176
-
(2002)
Nat. Immunol.
, vol.3
, pp. 1169-1176
-
-
Saric, T.1
Chang, S.C.2
Hattori, A.3
York, I.A.4
Markant, S.5
Rock, K.L.6
Tsujimoto, M.7
Goldberg, A.L.8
-
14
-
-
79960899377
-
Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility
-
The TASK and WTCCC2 Consortia (2011). Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility. Nat. Genet. 43, 761-767
-
(2011)
Nat. Genet.
, vol.43
, pp. 761-767
-
-
-
15
-
-
84869219870
-
Functional interaction of the ankylosing spondylitisassociated endoplasmic reticulum aminopeptidase 1 polymorphism and HLA-B27 in vivo
-
Garcia-Medel, N., Sanz-Bravo, A., Van Nguyen, D., Galocha, B., Gomez-Molina, P., Martin-Esteban, A., Alvarez-Navarro, C., and López de Castro, J. A. (2012). Functional interaction of the ankylosing spondylitisassociated endoplasmic reticulum aminopeptidase 1 polymorphism and HLA-B27 in vivo. Mol. Cell. Proteomics 11, 1416-1429
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 1416-1429
-
-
Garcia-Medel, N.1
Sanz-Bravo, A.2
Van Nguyen, D.3
Galocha, B.4
Gomez-Molina, P.5
Martin-Esteban, A.6
Alvarez-Navarro, C.7
López De Castro, J.A.8
-
16
-
-
0028960650
-
HLA-B27 subtypes in Asian patients with ankylosing spondylitis. Evidence for new associations
-
Lopez-Larrea, C., Sujirachato, K., Mehra, N. K., Chiewsilp, P., Isarangkura, D., Kanga, U., Dominguez, O., Coto, E., Peña, M., Setien, F., and Gonzalez-Roces, S. (1995) HLA-B27 subtypes in Asian patients with ankylosing spondylitis. Evidence for new associations. Tissue Antigens 45, 169-176
-
(1995)
Tissue Antigens
, vol.45
, pp. 169-176
-
-
Lopez-Larrea, C.1
Sujirachato, K.2
Mehra, N.K.3
Chiewsilp, P.4
Isarangkura, D.5
Kanga, U.6
Dominguez, O.7
Coto, E.8
Peña, M.9
Setien, F.10
Gonzalez-Roces, S.11
-
17
-
-
0028839838
-
Relevance of residue 116 of HLA-B27 in determining susceptibility to ankylosing spondylitis
-
D'Amato, M., Fiorillo, M. T., Carcassi, C., Mathieu, A., Zuccarelli, A., Bitti, P. P., Tosi, R., and Sorrentino, R. (1995) Relevance of residue 116 of HLA-B27 in determining susceptibility to ankylosing spondylitis. Eur. J. Immunol. 25, 3199-3201
-
(1995)
Eur. J. Immunol.
, vol.25
, pp. 3199-3201
-
-
D'Amato, M.1
Fiorillo, M.T.2
Carcassi, C.3
Mathieu, A.4
Zuccarelli, A.5
Bitti, P.P.6
Tosi, R.7
Sorrentino, R.8
-
18
-
-
10444251006
-
HLA-B27 in the Greek Cypriot population: Distribution of subtypes in patients with ankylosing spondylitis and other HLA-B27-related diseases. The possible protective role of B∗2707
-
Varnavidou-Nicolaidou, A., Karpasitou, K., Georgiou, D., Stylianou, G., Kokkofitou, A., Michalis, C., Constantina, C., Gregoriadou, C., and Kyriakides, G. (2004) HLA-B27 in the Greek Cypriot population: distribution of subtypes in patients with ankylosing spondylitis and other HLA-B27-related diseases. The possible protective role of B∗2707. Hum. Immunol. 65, 1451-1454
-
(2004)
Hum. Immunol.
, vol.65
, pp. 1451-1454
-
-
Varnavidou-Nicolaidou, A.1
Karpasitou, K.2
Georgiou, D.3
Stylianou, G.4
Kokkofitou, A.5
Michalis, C.6
Constantina, C.7
Gregoriadou, C.8
Kyriakides, G.9
-
19
-
-
84864828931
-
Old and new HLA associations with ankylosing spondylitis
-
Diaz-Pena, R., Lopez-Vazquez, A., and Lopez-Larrea, C. (2012) Old and new HLA associations with ankylosing spondylitis. Tissue Antigens 80, 205-213
-
(2012)
Tissue Antigens
, vol.80
, pp. 205-213
-
-
Diaz-Pena, R.1
Lopez-Vazquez, A.2
Lopez-Larrea, C.3
-
20
-
-
0023620962
-
Structural analysis of an HLA-B27 functional variant, B27d, detected in American blacks
-
Rojo, S., Aparicio, P., Hansen, J. A., Choo, S. Y., and Lopez de Castro, J. A. (1987). Structural analysis of an HLA-B27 functional variant, B27d, detected in American blacks. J. Immunol. 139, 3396-3401
-
(1987)
J. Immunol.
, vol.139
, pp. 3396-3401
-
-
Rojo, S.1
Aparicio, P.2
Hansen, J.A.3
Choo, S.Y.4
Lopez De Castro, J.A.5
-
21
-
-
0023950270
-
Molecular analysis of the variant alloantigen HLA-B27d (HLA- B∗2703) identifies a unique single amino acid substitution
-
Choo, S. Y., St. John, T., Orr, H. T., and Hansen, J. A. (1988) Molecular analysis of the variant alloantigen HLA-B27d (HLA- B∗2703) identifies a unique single amino acid substitution. Hum. Immunol. 21, 209-219
-
(1988)
Hum. Immunol.
, vol.21
, pp. 209-219
-
-
Choo, S.Y.1
St. John, T.2
Orr, H.T.3
Hansen, J.A.4
-
22
-
-
0028426881
-
Differences in peptide presentation between B27 subtypes: The importance of the P1 side chain in maintaining high affinity peptide binding to B∗2703
-
Colbert, R. A., Rowland Jones, S. L., McMichael, A. J., and Frelinger, J. A. (1994) Differences in peptide presentation between B27 subtypes: the importance of the P1 side chain in maintaining high affinity peptide binding to B∗2703. Immunity 1, 121-130
-
(1994)
Immunity
, vol.1
, pp. 121-130
-
-
Colbert, R.A.1
Rowland Jones, S.L.2
McMichael, A.J.3
Frelinger, J.A.4
-
23
-
-
0030455722
-
Differences in endogenous peptides presented by HLA-B∗2705 and B∗2703 allelic variants: Implications for susceptibility to spondylarthropathies
-
Boisgérault, F., Tieng, V., Stolzenberg, M. C., Dulphy, N., Khalil, I., Tamouza, R., Charron, D., and Toubert, A. (1996) Differences in endogenous peptides presented by HLA-B∗2705 and B∗2703 allelic variants: implications for susceptibility to spondylarthropathies. J. Clin. Invest. 98, 2764-2770
-
(1996)
J. Clin. Invest.
, vol.98
, pp. 2764-2770
-
-
Boisgérault, F.1
Tieng, V.2
Stolzenberg, M.C.3
Dulphy, N.4
Khalil, I.5
Tamouza, R.6
Charron, D.7
Toubert, A.8
-
24
-
-
0026766950
-
Role of binding pockets for amino-terminal peptide residues in HLA-B27 allorecognition
-
Villadangos, J. A., Galocha, B., Lopez, D., Calvo, V., and Lopez de Castro, J. A. (1992). Role of binding pockets for amino-terminal peptide residues in HLA-B27 allorecognition. J. Immunol. 149, 505-510
-
(1992)
J. Immunol.
, vol.149
, pp. 505-510
-
-
Villadangos, J.A.1
Galocha, B.2
Lopez, D.3
Calvo, V.4
Lopez De Castro, J.A.5
-
25
-
-
0031019845
-
Spondyloarthritis in West Africa: Evidence for a non-B27 protective effect
-
Brown, M., Jepson, A., Young, A., Whittle, H., Greenwood, B., and Wordsworth, P. (1997) Spondyloarthritis in West Africa: evidence for a non-B27 protective effect. Ann. Rheum. Dis. 56, 68-70
-
(1997)
Ann. Rheum. Dis.
, vol.56
, pp. 68-70
-
-
Brown, M.1
Jepson, A.2
Young, A.3
Whittle, H.4
Greenwood, B.5
Wordsworth, P.6
-
26
-
-
0026521967
-
The HLA-A,B "negative" mutant cell line C1R expresses a novel HLA-B35 allele, which also has a point mutation in the translation initiation codon
-
Zemmour, J., Little, A. M., Schendel, D. J., and Parham P. (1992) The HLA-A,B "negative" mutant cell line C1R expresses a novel HLA-B35 allele, which also has a point mutation in the translation initiation codon. J. Immunol. 148, 1941-1948
-
(1992)
J. Immunol.
, vol.148
, pp. 1941-1948
-
-
Zemmour, J.1
Little, A.M.2
Schendel, D.J.3
Parham, P.4
-
27
-
-
0025335830
-
Structure and diversity of HLA-B27-specific T cell epitopes. Analysis with site-directed mutants mimicking HLA-B27 subtype polymorphism
-
Calvo, V., Rojo, S., Lopez, D., Galocha, B., and Lopez de Castro, J. A. (1990). Structure and diversity of HLA-B27-specific T cell epitopes. Analysis with site-directed mutants mimicking HLA-B27 subtype polymorphism. J. Immunol. 144, 4038-4045
-
(1990)
J. Immunol.
, vol.144
, pp. 4038-4045
-
-
Calvo, V.1
Rojo, S.2
Lopez, D.3
Galocha, B.4
Lopez De Castro, J.A.5
-
28
-
-
0028351519
-
Unusual topology of an HLA-B27 allospecific T cell epitope lacking peptide specificity
-
Villadangos, J. A., Galocha, B., and Lopez de Castro, J. A. (1994). Unusual topology of an HLA-B27 allospecific T cell epitope lacking peptide specificity. J. Immunol. 152, 2317-2323
-
(1994)
J. Immunol.
, vol.152
, pp. 2317-2323
-
-
Villadangos, J.A.1
Galocha, B.2
Lopez De Castro, J.A.3
-
29
-
-
0037047424
-
Differential association of HLA-B∗2705 and B∗2709 to ankylosing spondylitis correlates with limited peptide subsets but not with altered cell surface stability
-
Ramos, M., Paradela, A., Vazquez, M., Marina, A., Vazquez, J., and Lopez de Castro, J. A. (2002). Differential association of HLA-B∗2705 and B∗2709 to ankylosing spondylitis correlates with limited peptide subsets but not with altered cell surface stability. J. Biol. Chem. 277, 28749-28756
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 28749-28756
-
-
Ramos, M.1
Paradela, A.2
Vazquez, M.3
Marina, A.4
Vazquez, J.5
Lopez De Castro, J.A.6
-
30
-
-
33746217869
-
B∗2707 differs in peptide specificity from B∗2705 and B∗2704 as much as from HLA-B27 subtypes not associated to spondyloarthritis
-
Gomez, P., Montserrat, V., Marcilla, M., Paradela, A., and López de Castro, J. A. (2006). B∗2707 differs in peptide specificity from B∗2705 and B∗2704 as much as from HLA-B27 subtypes not associated to spondyloarthritis. Eur. J. Immunol. 36, 1867-1881
-
(2006)
Eur. J. Immunol.
, vol.36
, pp. 1867-1881
-
-
Gomez, P.1
Montserrat, V.2
Marcilla, M.3
Paradela, A.4
López De Castro, J.A.5
-
31
-
-
0018154865
-
Production of monoclonal antibodies to group A erythrocytes, HLA and other human cell surface antigens. New tools for genetic analysis
-
Barnstable, C. J., Bodmer, W. F., Brown, G., Galfre, G., Milstein, C., Williams, A. F., and Ziegler, A. (1978) Production of monoclonal antibodies to group A erythrocytes, HLA and other human cell surface antigens. New tools for genetic analysis. Cell 14, 9-20
-
(1978)
Cell
, vol.14
, pp. 9-20
-
-
Barnstable, C.J.1
Bodmer, W.F.2
Brown, G.3
Galfre, G.4
Milstein, C.5
Williams, A.F.6
Ziegler, A.7
-
32
-
-
0032533487
-
The same natural ligand is involved in allorecognition of multiple HLA-B27 subtypes by a single T cell clone: Role of peptide and the MHC molecule in alloreactivity
-
Paradela, A., Garcia-Peydro, M., Vazquez, J., Rognan, D., and Lopez de Castro, J. A. (1998). The same natural ligand is involved in allorecognition of multiple HLA-B27 subtypes by a single T cell clone: role of peptide and the MHC molecule in alloreactivity. J. Immunol. 161, 5481-5490
-
(1998)
J. Immunol.
, vol.161
, pp. 5481-5490
-
-
Paradela, A.1
Garcia-Peydro, M.2
Vazquez, J.3
Rognan, D.4
Lopez De Castro, J.A.5
-
33
-
-
0033961477
-
Limited diversity of peptides related to an alloreactive T cell epitope in the HLA-B27-bound peptide repertoire results from restrictions at multiple steps along the processing-loading pathway
-
Paradela, A., Alvarez, I., Garcia-Peydro, M., Sesma, L., Ramos, M., Vazquez, J., and Lopez de Castro, J. A. 2000. Limited diversity of peptides related to an alloreactive T cell epitope in the HLA-B27-bound peptide repertoire results from restrictions at multiple steps along the processing-loading pathway. J. Immunol. 164, 329-337
-
(2000)
J. Immunol.
, vol.164
, pp. 329-337
-
-
Paradela, A.1
Alvarez, I.2
Garcia-Peydro, M.3
Sesma, L.4
Ramos, M.5
Vazquez, J.6
Lopez De Castro, J.A.7
-
34
-
-
84856072195
-
The origin of proteasome-inhibitor resistant HLA class I peptidomes: A study with HLA-A∗68:01
-
Garcia-Medel, N., Sanz-Bravo, A., Barnea, E., Admon, A., and Lopez de Castro, J. A. (2012). The origin of proteasome-inhibitor resistant HLA class I peptidomes: a study with HLA-A∗68:01. Mol. Cell. Proteomics 11, 1-15
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 1-15
-
-
Garcia-Medel, N.1
Sanz-Bravo, A.2
Barnea, E.3
Admon, A.4
Lopez De Castro, J.A.5
-
35
-
-
84893340488
-
Increased diversity of the HLA-B40 ligandome by the presentation of peptides phosphorylated at their main anchor residue
-
Marcilla, M., Alpizar, A., Lombardia, M., Ramos-Fernandez, A., Ramos, M., and Albar, J. P. (2014) Increased diversity of the HLA-B40 ligandome by the presentation of peptides phosphorylated at their main anchor residue. Mol. Cell. Proteomics 13, 462-474
-
(2014)
Mol. Cell. Proteomics
, vol.13
, pp. 462-474
-
-
Marcilla, M.1
Alpizar, A.2
Lombardia, M.3
Ramos-Fernandez, A.4
Ramos, M.5
Albar, J.P.6
-
36
-
-
1842580753
-
Improving large-scale proteomics by clustering of mass spectrometry data
-
Beer, I., Barnea, E., Ziv, T., and Admon, A. (2004) Improving large-scale proteomics by clustering of mass spectrometry data. Proteomics 4, 950-960
-
(2004)
Proteomics
, vol.4
, pp. 950-960
-
-
Beer, I.1
Barnea, E.2
Ziv, T.3
Admon, A.4
-
37
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng, J. K., McCormack, A. L., and Yates, J. R. (1994) An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Amer. Soc. Mass. Spect. 5, 976-989
-
(1994)
J. Amer. Soc. Mass. Spect.
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates, J.R.3
-
38
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D. N., Pappin, D. J., Creasy, D. M., and Cottrell, J. S. (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20, 3551-3567
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
39
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.P.B.-range mass accuracies and proteome-wide protein quantification
-
Cox, J., and Mann, M. (2008) MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol. 26, 1367-1372
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
40
-
-
33847630405
-
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
-
Elias, J. E., and Gygi, S. P. (2007) Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry. Nat. Methods 4, 207-214
-
(2007)
Nat. Methods
, vol.4
, pp. 207-214
-
-
Elias, J.E.1
Gygi, S.P.2
-
41
-
-
77449146854
-
Target-decoy search strategy for mass spectrometry-based proteomics
-
Elias, J. E., and Gygi, S. P. (2010) Target-decoy search strategy for mass spectrometry-based proteomics. Methods Mol. Biol. 604, 55-71
-
(2010)
Methods Mol. Biol.
, vol.604
, pp. 55-71
-
-
Elias, J.E.1
Gygi, S.P.2
-
42
-
-
77956503752
-
Protein information and knowledge extractor: Discovering biological information from proteomics data
-
Medina-Aunon, J. A., Paradela, A., Macht, M., Thiele, H., Corthals, G., and Albar, J. P. (2010) Protein information and knowledge extractor: discovering biological information from proteomics data. Proteomics 10, 3262-3271
-
(2010)
Proteomics
, vol.10
, pp. 3262-3271
-
-
Medina-Aunon, J.A.1
Paradela, A.2
Macht, M.3
Thiele, H.4
Corthals, G.5
Albar, J.P.6
-
43
-
-
77949368187
-
Quantitative modeling of peptide binding to TAP using support vector machine
-
Diez-Rivero, C. M., Chenlo, B., Zuluaga, P., and Reche, P. A. (2010) Quantitative modeling of peptide binding to TAP using support vector machine. Proteins 78, 63-72
-
(2010)
Proteins
, vol.78
, pp. 63-72
-
-
Diez-Rivero, C.M.1
Chenlo, B.2
Zuluaga, P.3
Reche, P.A.4
-
44
-
-
77954148985
-
The specificity of trimming of MHC class I-presented peptides in the endoplasmic reticulum
-
Hearn, A., York, I. A., and Rock, K. L. (2009) The specificity of trimming of MHC class I-presented peptides in the endoplasmic reticulum. J. Immunol. 183, 5526-5536
-
(2009)
J. Immunol.
, vol.183
, pp. 5526-5536
-
-
Hearn, A.1
York, I.A.2
Rock, K.L.3
-
45
-
-
84880062482
-
The human leukocyte antigen-presented ligandome of B lymphocytes
-
Hassan, C., Kester, M. G., de Ru, A. H., Hombrink, P., Drijfhout, J. W., Nijveen, H., Leunissen, J. A., Heemskerk, M. H., Falkenburg, J. H., and van Veelen, P. A. (2013) The human leukocyte antigen-presented ligandome of B lymphocytes. Mol. Cell Proteomics 12, 1829-1843
-
(2013)
Mol. Cell Proteomics
, vol.12
, pp. 1829-1843
-
-
Hassan, C.1
Kester, M.G.2
De Ru, A.H.3
Hombrink, P.4
Drijfhout, J.W.5
Nijveen, H.6
Leunissen, J.A.7
Heemskerk, M.H.8
Falkenburg, J.H.9
Van Veelen, P.A.10
-
46
-
-
0035966070
-
The Cys-67 residue of HLA-B27 influences cell surface stability, peptide specificity, and T-cell antigen presentation
-
Alvarez, I., Martí, M., Vazquez, J., Camafeita, E., Ogueta, S., and Lopez de Castro, J. A. (2001). The Cys-67 residue of HLA-B27 influences cell surface stability, peptide specificity, and T-cell antigen presentation. J. Biol. Chem. 276, 48740-48747
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 48740-48747
-
-
Alvarez, I.1
Martí, M.2
Vazquez, J.3
Camafeita, E.4
Ogueta, S.5
Lopez De Castro, J.A.6
-
47
-
-
75749136956
-
The HLA-B∗2705 peptidome
-
Ben Dror, L., Barnea, E., Beer, I., Mann, M., and Admon, A. (2010) The HLA-B∗2705 peptidome. Arthritis Rheum. 62, 420-429
-
(2010)
Arthritis Rheum.
, vol.62
, pp. 420-429
-
-
Ben Dror, L.1
Barnea, E.2
Beer, I.3
Mann, M.4
Admon, A.5
-
48
-
-
84876270993
-
Natural HLA-B∗2705 protein ligands with glutamine as anchor motif: Implications for HLA-B27 association with spondyloarthropathy
-
Infantes, S., Lorente, E., Barnea, E., Beer, I., Barriga, A., Lasala, F., Jimenez, M., Admon, A., and Lopez, D. (2013) Natural HLA-B∗2705 protein ligands with glutamine as anchor motif: implications for HLA-B27 association with spondyloarthropathy. J. Biol. Chem. 288, 10882-10889
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 10882-10889
-
-
Infantes, S.1
Lorente, E.2
Barnea, E.3
Beer, I.4
Barriga, A.5
Lasala, F.6
Jimenez, M.7
Admon, A.8
Lopez, D.9
-
49
-
-
0037053328
-
The peptide repertoires of HLA-B27 subtypes differentially associated to spondyloarthropathy (B∗2704 and B∗2706) differ by specific changes at three anchor positions
-
Sesma, L., Montserrat, V., Lamas, J. R., Marina, A., Vazquez, J., and Lopez de Castro, J. A. (2002). The peptide repertoires of HLA-B27 subtypes differentially associated to spondyloarthropathy (B∗2704 and B∗2706) differ by specific changes at three anchor positions. J. Biol. Chem. 277, 16744-16749
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 16744-16749
-
-
Sesma, L.1
Montserrat, V.2
Lamas, J.R.3
Marina, A.4
Vazquez, J.5
Lopez De Castro, J.A.6
-
50
-
-
0035725736
-
Large sharing of T-cell epitopes and natural ligands between HLA-B27 subtypes (B∗2702 and B∗2705) associated with spondyloarthritis
-
Marti, M., Alvarez, I., Montserrat, V., and Lopez de Castro, J. A. (2001). Large sharing of T-cell epitopes and natural ligands between HLA-B27 subtypes (B∗2702 and B∗2705) associated with spondyloarthritis. Tissue Antigens 58, 351-362
-
(2001)
Tissue Antigens
, vol.58
, pp. 351-362
-
-
Marti, M.1
Alvarez, I.2
Montserrat, V.3
Lopez De Castro, J.A.4
-
51
-
-
0028819781
-
The peptide-binding motif for the human transporter associated with antigen processing
-
Van Endert, P. M., Riganelli, D., Greco, G., Fleischhauer, K., Sidney, J., Sette, A., and Bach, J. F. (1995) The peptide-binding motif for the human transporter associated with antigen processing. J. Exp. Med. 182, 1883-1895
-
(1995)
J. Exp. Med.
, vol.182
, pp. 1883-1895
-
-
Van Endert, P.M.1
Riganelli, D.2
Greco, G.3
Fleischhauer, K.4
Sidney, J.5
Sette, A.6
Bach, J.F.7
-
52
-
-
35748981184
-
Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants
-
WTCC Consortium (2007) Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants. Nat. Genet. 39, 1329-1337
-
(2007)
Nat. Genet.
, vol.39
, pp. 1329-1337
-
-
-
53
-
-
84857924158
-
Endoplasmic reticulum aminopeptidase 1 (ERAP1) exhibits functionally significant interaction with HLA-B27 and relates to subtype specificity in ankylosing spondylitis
-
Haroon, N., Tsui, F. W., Uchanska-Ziegler, B., Ziegler, A., and Inman, R. D. (2012) Endoplasmic reticulum aminopeptidase 1 (ERAP1) exhibits functionally significant interaction with HLA-B27 and relates to subtype specificity in ankylosing spondylitis. Ann. Rheum. Dis. 71, 589-595
-
(2012)
Ann. Rheum. Dis.
, vol.71
, pp. 589-595
-
-
Haroon, N.1
Tsui, F.W.2
Uchanska-Ziegler, B.3
Ziegler, A.4
Inman, R.D.5
-
54
-
-
0029094240
-
Modulation of peptide binding by HLA-B27 polymorphism in pockets A and B, and peptide specificity of B∗2703
-
Villadangos, J. A., Galocha, B., Garcia, F., Albar, J. P., and Lopez de Castro, J. A. (1995). Modulation of peptide binding by HLA-B27 polymorphism in pockets A and B, and peptide specificity of B∗2703. Eur. J. Immunol. 25, 2370-2377
-
(1995)
Eur. J. Immunol.
, vol.25
, pp. 2370-2377
-
-
Villadangos, J.A.1
Galocha, B.2
Garcia, F.3
Albar, J.P.4
Lopez De Castro, J.A.5
-
55
-
-
33750798266
-
HLA-B∗2704, an allotype associated with ankylosing spondylitis, is critically dependent on transporter associated with antigen processing and relatively independent of tapasin and immunoproteasome for maturation, surface expression, and T cell recognition: Relationship to B∗2705 and B∗2706
-
Montserrat, V., Galocha, B., Marcilla, M., Vazquez, M., and Lopez de Castro, J. A. (2006). HLA-B∗2704, an allotype associated with ankylosing spondylitis, is critically dependent on transporter associated with antigen processing and relatively independent of tapasin and immunoproteasome for maturation, surface expression, and T cell recognition: relationship to B∗2705 and B∗2706. J. Immunol. 177, 7015-7023
-
(2006)
J. Immunol.
, vol.177
, pp. 7015-7023
-
-
Montserrat, V.1
Galocha, B.2
Marcilla, M.3
Vazquez, M.4
Lopez De Castro, J.A.5
-
56
-
-
0036230677
-
Optimization of the MHC class I peptide cargo is dependent on tapasin
-
Williams, A. P., Peh, C. A., Purcell, A. W., McCluskey, J., and Elliott, T. S. (2002) Optimization of the MHC class I peptide cargo is dependent on tapasin. Immunity. 16, 509-520
-
(2002)
Immunity.
, vol.16
, pp. 509-520
-
-
Williams, A.P.1
Peh, C.A.2
Purcell, A.W.3
McCluskey, J.4
Elliott, T.S.5
-
57
-
-
39749093082
-
Folding of HLA-B27 subtypes is determined by the global effect of polymorphic residues and shows incomplete correspondence to ankylosing spondylitis
-
Galocha, B., and López de Castro, J. A. (2008). Folding of HLA-B27 subtypes is determined by the global effect of polymorphic residues and shows incomplete correspondence to ankylosing spondylitis. Arthritis Rheum. 58, 401-412
-
(2008)
Arthritis Rheum.
, vol.58
, pp. 401-412
-
-
Galocha, B.1
López De Castro, J.A.2
-
58
-
-
78649810797
-
Mutational analysis reveals a complex interplay of peptide binding and multiple biological features of HLA-B27
-
Galocha, B., and López de Castro, J. A. (2010). Mutational analysis reveals a complex interplay of peptide binding and multiple biological features of HLA-B27. J. Biol. Chem. 285, 39180-39190
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 39180-39190
-
-
Galocha, B.1
López De Castro, J.A.2
-
59
-
-
0036847117
-
Ankylosing spondylitis is associated with HLA-B∗1403 in a West African population
-
Lopez-Larrea, C., Mijiyawa, M., Gonzalez, S., Fernandez-Morera, J. L., Blanco-Gelaz, M. A., Martinez-Borra, J., and Lopez-Vazquez, A. (2002) Ankylosing spondylitis is associated with HLA-B∗1403 in a West African population. Arthritis Rheum. 46, 2968-2971
-
(2002)
Arthritis Rheum.
, vol.46
, pp. 2968-2971
-
-
Lopez-Larrea, C.1
Mijiyawa, M.2
Gonzalez, S.3
Fernandez-Morera, J.L.4
Blanco-Gelaz, M.A.5
Martinez-Borra, J.6
Lopez-Vazquez, A.7
-
60
-
-
56449122510
-
Influence of HLA-B∗5703 and HLA-B∗1403 on susceptibility to spondyloarthropathies in the Zambian population
-
Diaz-Pena, R., Blanco-Gelaz, M. A., Njobvu, P., Lopez-Vazquez, A., Suarez-Alvarez, B., and Lopez-Larrea, C. (2008) Influence of HLA-B∗5703 and HLA-B∗1403 on susceptibility to spondyloarthropathies in the Zambian population. J. Rheumatol. 35, 2236-2240
-
(2008)
J. Rheumatol.
, vol.35
, pp. 2236-2240
-
-
Diaz-Pena, R.1
Blanco-Gelaz, M.A.2
Njobvu, P.3
Lopez-Vazquez, A.4
Suarez-Alvarez, B.5
Lopez-Larrea, C.6
-
61
-
-
57549095623
-
Disparate folding and stability of the ankylosing spondylitis-associated HLA-B∗1403 and B∗2705 proteins
-
Merino, E., Galocha, B., Vazquez, M. N., and Lopez de Castro, J. A. (2008). Disparate folding and stability of the ankylosing spondylitis-associated HLA-B∗1403 and B∗2705 proteins. Arthritis Rheum. 58, 3693-3704
-
(2008)
Arthritis Rheum.
, vol.58
, pp. 3693-3704
-
-
Merino, E.1
Galocha, B.2
Vazquez, M.N.3
Lopez De Castro, J.A.4
-
62
-
-
27744561683
-
Two HLA-B14 subtypes (B∗1402 and B∗1403) differentially associated with ankylosing spondylitis differ substantially in peptide specificity, but have limited peptide and T-cell epitope sharing with HLA-B27
-
Merino, E., Montserrat, V., Paradela, A., and Lopez de Castro, J. A. (2005). Two HLA-B14 subtypes (B∗1402 and B∗1403) differentially associated with ankylosing spondylitis differ substantially in peptide specificity, but have limited peptide and T-cell epitope sharing with HLA-B27. J. Biol. Chem. 280, 35868-35880
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 35868-35880
-
-
Merino, E.1
Montserrat, V.2
Paradela, A.3
Lopez De Castro, J.A.4
-
63
-
-
0032528406
-
Relationship between peptide selectivities of human transporters associated with antigen processing and HLA class I molecules
-
Daniel, S., Brusic, V., Caillat-Zucman, S., Petrovsky, N., Harrison, L., Riganelli, D., Sinigaglia, F., Gallazzi, F., Hammer, J., and Van Endert, P. M. (1998) Relationship between peptide selectivities of human transporters associated with antigen processing and HLA class I molecules. J. Immunol. 161, 617-624
-
(1998)
J. Immunol.
, vol.161
, pp. 617-624
-
-
Daniel, S.1
Brusic, V.2
Caillat-Zucman, S.3
Petrovsky, N.4
Harrison, L.5
Riganelli, D.6
Sinigaglia, F.7
Gallazzi, F.8
Hammer, J.9
Van Endert, P.M.10
-
64
-
-
33644547347
-
Cutting edge: HLA-B27 acquires many N-terminal dibasic peptides: Coupling cytosolic peptide stability to antigen presentation
-
Herberts, C. A., Neijssen, J. J., de Haan, J., Janssen, L., Drijfhout, J. W., Reits, E. A., and Neefjes, J. J. (2006) Cutting edge: HLA-B27 acquires many N-terminal dibasic peptides: coupling cytosolic peptide stability to antigen presentation. J. Immunol. 176, 2697-2701
-
(2006)
J. Immunol.
, vol.176
, pp. 2697-2701
-
-
Herberts, C.A.1
Neijssen, J.J.2
De Haan, J.3
Janssen, L.4
Drijfhout, J.W.5
Reits, E.A.6
Neefjes, J.J.7
-
65
-
-
84879691837
-
Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci
-
Cortes, A., Hadler, J., Pointon, J. P., Robinson, P. C., Karaderi, T., Leo, P., Cremin, K., Pryce, K., Harris, J., Lee, S., Joo, K. B., Shim, S. C., Weisman, M., Ward, M., Zhou, X., Garchon, H. J., Chiocchia, G., Nossent, J., Lie, B. A., Forre, O., Tuomilehto, J., Laiho, K., Jiang, L., Liu, Y., Wu, X., Bradbury, L. A., Elewaut, D., Burgos-Vargas, R., Stebbings, S., Appleton, L., Farrah, C., Lau, J., Kenna, T. J., Haroon, N., Ferreira, M. A., Yang, J., Mulero, J., Fernandez-Sueiro, J. L., Gonzalez-Gay, M. A., Lopez-Larrea, C., Deloukas, P., Donnelly, P., Bowness, P., Gafney, K., Gaston, H., Gladman, D. D., Rahman, P., Maksymowych, W. P., Xu, H., Crusius, J. B., van der Horst-Bruinsma, I. E., Chou, C. T., Valle-Onate, R., Romero-Sanchez, C., Hansen, I. M., Pimentel-Santos, F.M., Inman, R. D., Videm, V., Martin, J., Breban, M., Reveille, J. D., Evans, D. M., Kim, T. H., Wordsworth, B. P., and Brown, M. A. (2013) Identification of multiple risk variants for ankylosing spondylitis through high-density genotyping of immune-related loci. Nat. Genet. 45, 730-738
-
(2013)
Nat. Genet.
, vol.45
, pp. 730-738
-
-
Cortes, A.1
Hadler, J.2
Pointon, J.P.3
Robinson, P.C.4
Karaderi, T.5
Leo, P.6
Cremin, K.7
Pryce, K.8
Harris, J.9
Lee, S.10
Joo, K.B.11
Shim, S.C.12
Weisman, M.13
Ward, M.14
Zhou, X.15
Garchon, H.J.16
Chiocchia, G.17
Nossent, J.18
Lie, B.A.19
Forre, O.20
Tuomilehto, J.21
Laiho, K.22
Jiang, L.23
Liu, Y.24
Wu, X.25
Bradbury, L.A.26
Elewaut, D.27
Burgos-Vargas, R.28
Stebbings, S.29
Appleton, L.30
Farrah, C.31
Lau, J.32
Kenna, T.J.33
Haroon, N.34
Ferreira, M.A.35
Yang, J.36
Mulero, J.37
Fernandez-Sueiro, J.L.38
Gonzalez-Gay, M.A.39
Lopez-Larrea, C.40
Deloukas, P.41
Donnelly, P.42
Bowness, P.43
Gafney, K.44
Gaston, H.45
Gladman, D.D.46
Rahman, P.47
Maksymowych, W.P.48
Xu, H.49
Crusius, J.B.50
Van Der Horst-Bruinsma, I.E.51
Chou, C.T.52
Valle-Onate, R.53
Romero-Sanchez, C.54
Hansen, I.M.55
Pimentel-Santos, F.M.56
Inman, R.D.57
Videm, V.58
Martin, J.59
Breban, M.60
Reveille, J.D.61
Evans, D.M.62
Kim, T.H.63
Wordsworth, B.P.64
Brown, M.A.65
more..
-
66
-
-
84896269583
-
Critical role of endoplasmic reticulum aminopeptidase 1 in determining the length and sequence of peptides bound and presented by HLA-B27
-
Chen, L., Fischer, R., Peng, Y., Reeves, E., McHugh, K., Ternette, N., Hanke, T., Dong, T., Elliott, T., Shastri, N., Kollnberger, S., James, E., Kessler, B., and Bowness, P. (2014) Critical role of endoplasmic reticulum aminopeptidase 1 in determining the length and sequence of peptides bound and presented by HLA-B27. Arthritis Rheumatol. 66, 284-294
-
(2014)
Arthritis Rheumatol.
, vol.66
, pp. 284-294
-
-
Chen, L.1
Fischer, R.2
Peng, Y.3
Reeves, E.4
McHugh, K.5
Ternette, N.6
Hanke, T.7
Dong, T.8
Elliott, T.9
Shastri, N.10
Kollnberger, S.11
James, E.12
Kessler, B.13
Bowness, P.14
-
67
-
-
0032742012
-
Misfolding of HLA-B27 as a result of its B pocket suggests a novel mechanism for its role in susceptibility to spondyloarthropathies
-
Mear, J. P., Schreiber, K. L., Münz, C., Zhu, X., Stevanovic, S., Rammensee, H. G., Rowland-Jones, S. L., and Colbert, R. A. (1999) Misfolding of HLA-B27 as a result of its B pocket suggests a novel mechanism for its role in susceptibility to spondyloarthropathies. J. Immunol. 163, 6665-6670
-
(1999)
J. Immunol.
, vol.163
, pp. 6665-6670
-
-
Mear, J.P.1
Schreiber, K.L.2
Münz, C.3
Zhu, X.4
Stevanovic, S.5
Rammensee, H.G.6
Rowland-Jones, S.L.7
Colbert, R.A.8
-
68
-
-
0037189545
-
HLA-B27 misfolding is associated with aberrant intermolecular disulfide bond formation (dimerization) in the endoplasmic reticulum
-
Dangoria, N. S., DeLay, M. L., Kingsbury, D. J., Mear, J. P., Uchanska-Ziegler, B., Ziegler, A., and Colbert, R. A. (2002) HLA-B27 misfolding is associated with aberrant intermolecular disulfide bond formation (dimerization) in the endoplasmic reticulum. J. Biol. Chem. 277, 23459-23468
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 23459-23468
-
-
Dangoria, N.S.1
DeLay, M.L.2
Kingsbury, D.J.3
Mear, J.P.4
Uchanska-Ziegler, B.5
Ziegler, A.6
Colbert, R.A.7
-
69
-
-
0036045424
-
HLA B27 in health and disease: A double-edged sword?
-
Bowness, P. (2002) HLA B27 in health and disease: a double-edged sword? Rheumatology 41, 857-868
-
(2002)
Rheumatology
, vol.41
, pp. 857-868
-
-
Bowness, P.1
-
70
-
-
84886249418
-
The arthritis-associated HLA-B∗27:05 allele forms more cell surface B27 dimer and free heavy chain ligands for KIR3DL2 than HLAB∗27:09
-
Cauli, A., Shaw, J., Giles, J., Hatano, J., Rysnik, O., Payeli, S., McHugh, K., Dessole, G., Porru, G., Desogus, E., Fiedler, S., Holper, S., Carette, A., Blanco-Gelaz, M. A., Vacca, A., Piga, M., Ibba, V., Garau, P., La Nasa, G., Lopez-Larrea, C., Mathieu, A., Renner, C., Bowness, P., and Kollnberger, S. (2013) The arthritis-associated HLA-B∗27:05 allele forms more cell surface B27 dimer and free heavy chain ligands for KIR3DL2 than HLAB∗27:09. Rheumatology 52, 1952-1962
-
(2013)
Rheumatology
, vol.52
, pp. 1952-1962
-
-
Cauli, A.1
Shaw, J.2
Giles, J.3
Hatano, J.4
Rysnik, O.5
Payeli, S.6
McHugh, K.7
Dessole, G.8
Porru, G.9
Desogus, E.10
Fiedler, S.11
Holper, S.12
Carette, A.13
Blanco-Gelaz, M.A.14
Vacca, A.15
Piga, M.16
Ibba, V.17
Garau, P.18
La Nasa, G.19
Lopez-Larrea, C.20
Mathieu, A.21
Renner, C.22
Bowness, P.23
Kollnberger, S.24
more..
|