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Volumn 16, Issue 1, 2015, Pages

Transcriptional landscape of psoriasis identifies the involvement of IL36 and IL36RN

Author keywords

Functional genomics; Gene expression profiling; High throughput nucleotide sequencing; Psoriasis; Transcriptome

Indexed keywords

TRANSCRIPTOME; IL36G PROTEIN, HUMAN; IL36RN PROTEIN, HUMAN; INTERLEUKIN 1; INTERLEUKIN DERIVATIVE;

EID: 84928259014     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-015-1508-2     Document Type: Article
Times cited : (71)

References (42)
  • 2
    • 0037420518 scopus 로고    scopus 로고
    • Psoriasis
    • Lebwohl M. Psoriasis. Lancet. 2003;361(9364):1197-204.
    • (2003) Lancet , vol.361 , Issue.9364 , pp. 1197-1204
    • Lebwohl, M.1
  • 4
    • 43249083380 scopus 로고    scopus 로고
    • A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci
    • Liu Y, Helms C, Liao W, Zaba LC, Duan S, Gardner J, et al. A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci. PLoS Genet. 2008;4(3):e1000041.
    • (2008) PLoS Genet , vol.4 , Issue.3 , pp. e1000041
    • Liu, Y.1    Helms, C.2    Liao, W.3    Zaba, L.C.4    Duan, S.5    Gardner, J.6
  • 5
    • 11044228418 scopus 로고    scopus 로고
    • Combined haplotype analysis of the interleukin-19 and -20 genes: relationship to plaque-type psoriasis
    • Kõks S, Kingo K, Rätsep R, Karelson M, Silm H, Vasar E. Combined haplotype analysis of the interleukin-19 and -20 genes: relationship to plaque-type psoriasis. Genes Immun. 2004;5(8):662-7.
    • (2004) Genes Immun , vol.5 , Issue.8 , pp. 662-667
    • Kõks, S.1    Kingo, K.2    Rätsep, R.3    Karelson, M.4    Silm, H.5    Vasar, E.6
  • 6
    • 30744458384 scopus 로고    scopus 로고
    • Possible relations between the polymorphisms of the cytokines IL-19, IL-20 and IL-24 and plaque-type psoriasis
    • Kõks S, Kingo K, Vabrit K, Rätsep R, Karelson M, Silm H, et al. Possible relations between the polymorphisms of the cytokines IL-19, IL-20 and IL-24 and plaque-type psoriasis. Genes Immun. 2005;6(5):407-15.
    • (2005) Genes Immun , vol.6 , Issue.5 , pp. 407-415
    • Kõks, S.1    Kingo, K.2    Vabrit, K.3    Rätsep, R.4    Karelson, M.5    Silm, H.6
  • 7
    • 0035880456 scopus 로고    scopus 로고
    • Insights into psoriasis and other inflammatory diseases from large-scale gene expression studies
    • Bowcock AM, Shannon W, Du F, Duncan J, Cao K, Aftergut K, et al. Insights into psoriasis and other inflammatory diseases from large-scale gene expression studies. Hum Mol Genet. 2001;10(17):1793-805.
    • (2001) Hum Mol Genet , vol.10 , Issue.17 , pp. 1793-1805
    • Bowcock, A.M.1    Shannon, W.2    Du, F.3    Duncan, J.4    Cao, K.5    Aftergut, K.6
  • 8
    • 77953620903 scopus 로고    scopus 로고
    • Assessment of the psoriatic transcriptome in a large sample: additional regulated genes and comparisons with in vitro models
    • Gudjonsson JE, Ding J, Johnston A, Tejasvi T, Guzman AM, Nair RP, et al. Assessment of the psoriatic transcriptome in a large sample: additional regulated genes and comparisons with in vitro models. J Invest Dermatol. 2010;130(7):1829-40.
    • (2010) J Invest Dermatol , vol.130 , Issue.7 , pp. 1829-1840
    • Gudjonsson, J.E.1    Ding, J.2    Johnston, A.3    Tejasvi, T.4    Guzman, A.M.5    Nair, R.P.6
  • 9
    • 84880891082 scopus 로고    scopus 로고
    • Dissecting the psoriasis transcriptome: inflammatory- and cytokine-driven gene expression in lesions from 163 patients
    • Swindell WR, Johnston A, Voorhees JJ, Elder JT, Gudjonsson JE. Dissecting the psoriasis transcriptome: inflammatory- and cytokine-driven gene expression in lesions from 163 patients. BMC Genomics. 2013;14:527.
    • (2013) BMC Genomics , vol.14 , pp. 527
    • Swindell, W.R.1    Johnston, A.2    Voorhees, J.J.3    Elder, J.T.4    Gudjonsson, J.E.5
  • 10
    • 79959361260 scopus 로고    scopus 로고
    • Global gene expression analysis reveals evidence for decreased lipid biosynthesis and increased innate immunity in uninvolved psoriatic skin
    • Gudjonsson JE, Ding J, Li X, Nair RP, Tejasvi T, Qin ZS, et al. Global gene expression analysis reveals evidence for decreased lipid biosynthesis and increased innate immunity in uninvolved psoriatic skin. J Invest Dermatol. 2009;129(12):2795-804.
    • (2009) J Invest Dermatol , vol.129 , Issue.12 , pp. 2795-2804
    • Gudjonsson, J.E.1    Ding, J.2    Li, X.3    Nair, R.P.4    Tejasvi, T.5    Qin, Z.S.6
  • 11
    • 77956298963 scopus 로고    scopus 로고
    • Evaluation of the psoriasis transcriptome across different studies by gene set enrichment analysis (GSEA)
    • Suarez-Farinas M, Lowes MA, Zaba LC, Krueger JG. Evaluation of the psoriasis transcriptome across different studies by gene set enrichment analysis (GSEA). PLoS One. 2010;5(4):e10247.
    • (2010) PLoS One , vol.5 , Issue.4 , pp. e10247
    • Suarez-Farinas, M.1    Lowes, M.A.2    Zaba, L.C.3    Krueger, J.G.4
  • 12
    • 84902544820 scopus 로고    scopus 로고
    • Transcriptome Analysis of Psoriasis in a Large Case-control Sample: RNA-Seq Provides Insights into Disease Mechanisms
    • Li B, Tsoi LC, Swindell WR, Gudjonsson JE, Tejasvi T, Johnston A, et al. Transcriptome Analysis of Psoriasis in a Large Case-control Sample: RNA-Seq Provides Insights into Disease Mechanisms. J Invest Dermatol. 2014;134(7):1828-38.
    • (2014) J Invest Dermatol , vol.134 , Issue.7 , pp. 1828-1838
    • Li, B.1    Tsoi, L.C.2    Swindell, W.R.3    Gudjonsson, J.E.4    Tejasvi, T.5    Johnston, A.6
  • 13
    • 84856086455 scopus 로고    scopus 로고
    • Transcriptional profiling of psoriasis using RNA-seq reveals previously unidentified differentially expressed genes
    • Jabbari A, Suarez-Farinas M, Dewell S, Krueger JG. Transcriptional profiling of psoriasis using RNA-seq reveals previously unidentified differentially expressed genes. J Invest Dermatol. 2012;132(1):246-9.
    • (2012) J Invest Dermatol , vol.132 , Issue.1 , pp. 246-249
    • Jabbari, A.1    Suarez-Farinas, M.2    Dewell, S.3    Krueger, J.G.4
  • 14
    • 84858041341 scopus 로고    scopus 로고
    • Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
    • McCarthy DJ, Chen Y, Smyth GK. Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation. Nucleic Acids Res. 2012;40(10):4288-97.
    • (2012) Nucleic Acids Res , vol.40 , Issue.10 , pp. 4288-4297
    • McCarthy, D.J.1    Chen, Y.2    Smyth, G.K.3
  • 15
    • 75249087100 scopus 로고    scopus 로고
    • edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics. 2010;26(1):139-40.
    • (2010) Bioinformatics , vol.26 , Issue.1 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 16
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey JD, Tibshirani R. Statistical significance for genomewide studies. Proc Natl Acad Sci U S A. 2003;100(16):9440-5.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , Issue.16 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 17
    • 77953128344 scopus 로고    scopus 로고
    • Serum IL-22 correlates with psoriatic severity and serum IL-6 correlates with susceptibility to phototherapy
    • Lo YH, Torii K, Saito C, Furuhashi T, Maeda A, Morita A. Serum IL-22 correlates with psoriatic severity and serum IL-6 correlates with susceptibility to phototherapy. J Dermatol Sci. 2010;58(3):225-7.
    • (2010) J Dermatol Sci , vol.58 , Issue.3 , pp. 225-227
    • Lo, Y.H.1    Torii, K.2    Saito, C.3    Furuhashi, T.4    Maeda, A.5    Morita, A.6
  • 18
    • 0028317093 scopus 로고
    • Serum interleukin-6 levels as an early marker of therapeutic response to UVB radiation and topical steroids in psoriatic patients
    • Bonifati C, Solmone M, Trento E, Pietravalle M, Fazio M, Ameglio F. Serum interleukin-6 levels as an early marker of therapeutic response to UVB radiation and topical steroids in psoriatic patients. Int J Clin Lab Res. 1994;24(2):122-3.
    • (1994) Int J Clin Lab Res , vol.24 , Issue.2 , pp. 122-123
    • Bonifati, C.1    Solmone, M.2    Trento, E.3    Pietravalle, M.4    Fazio, M.5    Ameglio, F.6
  • 19
    • 79951821248 scopus 로고    scopus 로고
    • IL-1F5, -F6, -F8, and -F9: a novel IL-1 family signaling system that is active in psoriasis and promotes keratinocyte antimicrobial peptide expression
    • Johnston A, Xing X, Guzman AM, Riblett M, Loyd CM, Ward NL, et al. IL-1F5, -F6, -F8, and -F9: a novel IL-1 family signaling system that is active in psoriasis and promotes keratinocyte antimicrobial peptide expression. J Immunol. 2011;186(4):2613-22.
    • (2011) J Immunol , vol.186 , Issue.4 , pp. 2613-2622
    • Johnston, A.1    Xing, X.2    Guzman, A.M.3    Riblett, M.4    Loyd, C.M.5    Ward, N.L.6
  • 20
    • 84898658026 scopus 로고    scopus 로고
    • Gene expression profiles normalized in psoriatic skin by treatment with brodalumab, a human anti-IL-17 receptor monoclonal antibody
    • Russell CB, Rand H, Bigler J, Kerkof K, Timour M, Bautista E, et al. Gene expression profiles normalized in psoriatic skin by treatment with brodalumab, a human anti-IL-17 receptor monoclonal antibody. J Immunol. 2014;192(8):3828-36.
    • (2014) J Immunol , vol.192 , Issue.8 , pp. 3828-3836
    • Russell, C.B.1    Rand, H.2    Bigler, J.3    Kerkof, K.4    Timour, M.5    Bautista, E.6
  • 22
    • 0037453146 scopus 로고    scopus 로고
    • Novel mechanisms of T-cell and dendritic cell activation revealed by profiling of psoriasis on the 63,100-element oligonucleotide array
    • Zhou X, Krueger JG, Kao MC, Lee E, Du F, Menter A, et al. Novel mechanisms of T-cell and dendritic cell activation revealed by profiling of psoriasis on the 63,100-element oligonucleotide array. Physiol Genomics. 2003;13(1):69-78.
    • (2003) Physiol Genomics , vol.13 , Issue.1 , pp. 69-78
    • Zhou, X.1    Krueger, J.G.2    Kao, M.C.3    Lee, E.4    Du, F.5    Menter, A.6
  • 25
    • 71749085498 scopus 로고    scopus 로고
    • Effective treatment of psoriasis with etanercept is linked to suppression of IL-17 signaling, not immediate response TNF genes
    • 1022-1010, e1021-1395.
    • Zaba LC, Suarez-Farinas M, Fuentes-Duculan J, Nograles KE, Guttman-Yassky E, Cardinale I, et al. Effective treatment of psoriasis with etanercept is linked to suppression of IL-17 signaling, not immediate response TNF genes. J Allergy Clin Immunol. 2009;124(5):1022-1010 e1021-1395.
    • (2009) J Allergy Clin Immunol , vol.124 , Issue.5
    • Zaba, L.C.1    Suarez-Farinas, M.2    Fuentes-Duculan, J.3    Nograles, K.E.4    Guttman-Yassky, E.5    Cardinale, I.6
  • 26
    • 84867887920 scopus 로고    scopus 로고
    • Expanding the psoriasis disease profile: interrogation of the skin and serum of patients with moderate-to-severe psoriasis
    • Suarez-Farinas M, Li K, Fuentes-Duculan J, Hayden K, Brodmerkel C, Krueger JG. Expanding the psoriasis disease profile: interrogation of the skin and serum of patients with moderate-to-severe psoriasis. J Invest Dermatol. 2012;132(11):2552-64.
    • (2012) J Invest Dermatol , vol.132 , Issue.11 , pp. 2552-2564
    • Suarez-Farinas, M.1    Li, K.2    Fuentes-Duculan, J.3    Hayden, K.4    Brodmerkel, C.5    Krueger, J.G.6
  • 27
    • 84866022852 scopus 로고    scopus 로고
    • Meta-analysis derived (MAD) transcriptome of psoriasis defines the "core" pathogenesis of disease
    • Tian S, Krueger JG, Li K, Jabbari A, Brodmerkel C, Lowes MA, et al. Meta-analysis derived (MAD) transcriptome of psoriasis defines the "core" pathogenesis of disease. PLoS One. 2012;7(9):e44274.
    • (2012) PLoS One , vol.7 , Issue.9 , pp. e44274
    • Tian, S.1    Krueger, J.G.2    Li, K.3    Jabbari, A.4    Brodmerkel, C.5    Lowes, M.A.6
  • 28
    • 80053159711 scopus 로고    scopus 로고
    • Deep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAome
    • Joyce CE, Zhou X, Xia J, Ryan C, Thrash B, Menter A, et al. Deep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAome. Hum Mol Genet. 2011;20(20):4025-40.
    • (2011) Hum Mol Genet , vol.20 , Issue.20 , pp. 4025-4040
    • Joyce, C.E.1    Zhou, X.2    Xia, J.3    Ryan, C.4    Thrash, B.5    Menter, A.6
  • 29
    • 84905253096 scopus 로고    scopus 로고
    • Integrative RNA-seq and microarray data analysis reveals GC content and gene length biases in the psoriasis transcriptome
    • Swindell WR, Xing X, Voorhees JJ, Elder JT, Johnston A, Gudjonsson JE. Integrative RNA-seq and microarray data analysis reveals GC content and gene length biases in the psoriasis transcriptome. Physiol Genomics. 2014;46(15):533-46.
    • (2014) Physiol Genomics , vol.46 , Issue.15 , pp. 533-546
    • Swindell, W.R.1    Xing, X.2    Voorhees, J.J.3    Elder, J.T.4    Johnston, A.5    Gudjonsson, J.E.6
  • 30
    • 67349136468 scopus 로고    scopus 로고
    • Activation of the 2-5OAS/RNase L pathway in CVB1 or HAV/18f infected FRhK-4 cells does not require induction of OAS1 or OAS2 expression
    • Kulka M, Calvo MS, Ngo DT, Wales SQ, Goswami BB. Activation of the 2-5OAS/RNase L pathway in CVB1 or HAV/18f infected FRhK-4 cells does not require induction of OAS1 or OAS2 expression. Virology. 2009;388(1):169-84.
    • (2009) Virology , vol.388 , Issue.1 , pp. 169-184
    • Kulka, M.1    Calvo, M.S.2    Ngo, D.T.3    Wales, S.Q.4    Goswami, B.B.5
  • 31
    • 84892458522 scopus 로고    scopus 로고
    • A T cell gene expression panel for the diagnosis and monitoring of disease activity in patients with systemic lupus erythematosus
    • Grammatikos AP, Kyttaris VC, Kis-Toth K, Fitzgerald LM, Devlin A, Finnell MD, et al. A T cell gene expression panel for the diagnosis and monitoring of disease activity in patients with systemic lupus erythematosus. Clin Immunol. 2014;150(2):192-200.
    • (2014) Clin Immunol , vol.150 , Issue.2 , pp. 192-200
    • Grammatikos, A.P.1    Kyttaris, V.C.2    Kis-Toth, K.3    Fitzgerald, L.M.4    Devlin, A.5    Finnell, M.D.6
  • 32
    • 84884685147 scopus 로고    scopus 로고
    • IL-29 is produced by T(H)17 cells and mediates the cutaneous antiviral competence in psoriasis
    • 204ra129
    • Wolk K, Witte K, Witte E, Raftery M, Kokolakis G, Philipp S, et al. IL-29 is produced by T(H)17 cells and mediates the cutaneous antiviral competence in psoriasis. Sci Transl Med. 2013;5(204):204ra129.
    • (2013) Sci Transl Med , vol.5 , Issue.204
    • Wolk, K.1    Witte, K.2    Witte, E.3    Raftery, M.4    Kokolakis, G.5    Philipp, S.6
  • 33
    • 84896708817 scopus 로고    scopus 로고
    • Modulation of epidermal transcription circuits in psoriasis: new links between inflammation and hyperproliferation
    • Swindell WR, Johnston A, Xing X, Voorhees JJ, Elder JT, Gudjonsson JE. Modulation of epidermal transcription circuits in psoriasis: new links between inflammation and hyperproliferation. PLoS One. 2013;8(11):e79253.
    • (2013) PLoS One , vol.8 , Issue.11 , pp. e79253
    • Swindell, W.R.1    Johnston, A.2    Xing, X.3    Voorhees, J.J.4    Elder, J.T.5    Gudjonsson, J.E.6
  • 34
    • 84911002483 scopus 로고    scopus 로고
    • Role of Cytosolic Phospholipase A in Oxidative and Inflammatory Signaling Pathways in Different Cell Types in the Central Nervous System
    • Sun GY, Chuang DY, Zong Y, Jiang J, Lee JC, Gu Z, et al. Role of Cytosolic Phospholipase A in Oxidative and Inflammatory Signaling Pathways in Different Cell Types in the Central Nervous System. Molecular neurobiology. 2014;50(1):6-14.
    • (2014) Molecular neurobiology , vol.50 , Issue.1 , pp. 6-14
    • Sun, G.Y.1    Chuang, D.Y.2    Zong, Y.3    Jiang, J.4    Lee, J.C.5    Gu, Z.6
  • 35
    • 0034616346 scopus 로고    scopus 로고
    • Identification and initial characterization of four novel members of the interleukin-1 family
    • Kumar S, McDonnell PC, Lehr R, Tierney L, Tzimas MN, Griswold DE, et al. Identification and initial characterization of four novel members of the interleukin-1 family. J Biol Chem. 2000;275(14):10308-14.
    • (2000) J Biol Chem , vol.275 , Issue.14 , pp. 10308-10314
    • Kumar, S.1    McDonnell, P.C.2    Lehr, R.3    Tierney, L.4    Tzimas, M.N.5    Griswold, D.E.6
  • 37
    • 79953813107 scopus 로고    scopus 로고
    • Interleukin-1 in the pathogenesis and treatment of inflammatory diseases
    • Dinarello CA. Interleukin-1 in the pathogenesis and treatment of inflammatory diseases. Blood. 2011;117(14):3720-32.
    • (2011) Blood , vol.117 , Issue.14 , pp. 3720-3732
    • Dinarello, C.A.1
  • 41
    • 84890235827 scopus 로고    scopus 로고
    • The interleukin-1 family: back to the future
    • Garlanda C, Dinarello CA, Mantovani A. The interleukin-1 family: back to the future. Immunity. 2013;39(6):1003-18.
    • (2013) Immunity , vol.39 , Issue.6 , pp. 1003-1018
    • Garlanda, C.1    Dinarello, C.A.2    Mantovani, A.3


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