Accelerated evolution of schistosome genes coding for proteins located at the host-parasite interface

Genome Biology and Evolution

Volumn 7, Issue 2, 2015, Pages 431-443

  Philippsen, Gisele S ^a   Wilson, R Alan ^b   DeMarco, Ricardo ^a  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b UNIVERSITY OF YORK   (United Kingdom)

Author keywords

gene duplication; gene evolution; nonsynonymous mutations; vaccine candidates

Indexed keywords

SCHISTOSOMA; SCHISTOSOMA MANSONI;

SPHINGOLIPID ACTIVATOR PROTEIN; TRANSPOSON; VACCINE;

ANIMAL; GENE; GENE DUPLICATION; GENE EXPRESSION REGULATION; GENETIC DATABASE; GENETICS; HOST PARASITE INTERACTION; IMMUNOLOGY; INTRON; MOLECULAR EVOLUTION; OPEN READING FRAME; PARASITE; PHYLOGENY; SCHISTOSOMA; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; TRANSPOSON;

ANIMALS; DATABASES, GENETIC; DNA TRANSPOSABLE ELEMENTS; EVOLUTION, MOLECULAR; GENE DUPLICATION; GENES, HELMINTH; HOST-PARASITE INTERACTIONS; INTRONS; MUTAGENESIS, INSERTIONAL; OPEN READING FRAMES; PARASITES; PHYLOGENY; SAPOSINS; SCHISTOSOMA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SPECIES SPECIFICITY; VACCINES;

EID: 84928252852     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evu287     Document Type: Article

References (46)

1. Almeida GT, et al. 2012. Exploring the Schistosoma mansoni adult male transcriptome using RNA-seq. Exp Parasitol. 132:22-31.
2. Bower MA, Constant SL, Mendez S. 2008. Necator americanus: the Na-ASP-2 protein secreted by the infective larvae induces neutrophil recruitment in vivo and in vitro. Exp Parasitol. 118:569-575.
3. Braschi S, Borges WC, Wilson RA. 2006. Proteomic analysis of the schistosome tegument and its surface membranes. Mem Inst Oswaldo Cruz 101(Suppl 1): 205-212.
4. Braschi S, Wilson RA. 2006. Proteins exposed at the adult schistosome surface revealed by biotinylation. Mol Cell Proteomics. 5:347-356.
5. Bruhn H. 2005. A short guided tour through functional and structural features of saposin-like proteins. Biochem J. 389:249-257.
6. Cantacessi C, et al. 2012. Insights into SCP/TAPS proteins of liver flukes based on large-scale bioinformatic analyses of sequence datasets. PLoS One 7:e31164.
7. Cardoso FC, et al. 2008. Schistosoma mansoni tegument protein Sm29 is able to induce a Th1-type of immune response and protection against parasite infection. PLoS Negl Trop Dis. 2:e308.
8. Chalmers IW, et al. 2008. Developmentally regulated expression, alternative splicing and distinct sub-groupings in members of the Schistosoma mansoni venom allergen-like (SmVAL) gene family. BMC Genomics 9: 89.
9. Curwen RS, Ashton PD, Sundaralingam S, Wilson RA. 2006. Identification of novel proteases and immunomodulators in the secretions of schistosome cercariae that facilitate host entry. Mol Cell Proteomics. 5: 835-844.
10. Del Valle A, Jones BF, Harrison LM, Chadderdon RC, Cappello M. 2003. Isolation and molecular cloning of a secreted hookworm platelet inhibitor from adult Ancylostoma caninum. Mol Biochem Parasitol. 129: 167-177.
11. DeMarco R, et al. 2004. Saci-1, -2, and -3 and Perere, four novel retrotransposons with high transcriptional activities from the human parasite Schistosoma mansoni. J Virol. 78:2967-2978.
12. DeMarco R, et al. 2010. Protein variation in blood-dwelling schistosome worms generated by differential splicing of micro-exon gene transcripts. Genome Res. 20:1112-1121.
13. DeMarco R, Machado AA, Bisson-Filho AW, Verjovski-Almeida S. 2005. Identification of 18 new transcribed retrotransposons in Schistosoma mansoni. Biochem Biophys Res Commun. 333:230-240.
14. Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
15. Endo T, Ikeo K, Gojobori T. 1996. Large-scale search for genes on which positive selection may operate. Mol Biol Evol. 13:685-690.
16. Ferbeyre G, Smith JM, Cedergren R. 1998. Schistosome satellite DNA encodes active hammerhead ribozymes. Mol Cell Biol. 18:3880-3888.
17. Fiston-Lavier A-S, Anxolabehere D, Quesneville H. 2007. A model of segmental duplication formation in Drosophila melanogaster. Genome Res. 17:1458-1470.
18. Grabherr MG, et al. 2010. Genome-wide synteny through highly sensitive sequence alignment: Satsuma. Bioinformatics 26:1145-1151.
19. Hall SL, et al. 2011. Insights into blood feeding by schistosomes from a proteomic analysis of worm vomitus. Mol Biochem Parasitol. 179: 18-29.
20. Hawdon JM, Narasimhan S, Hotez PJ. 1999. Ancylostoma secreted protein 2: cloning and characterization of a second member of a family of nematode secreted proteins from Ancylostoma caninum. Mol Biochem Parasitol. 99:149-165.
21. Hedges DJ, Deininger PL. 2007. Inviting instability: transposable elements, double-strand breaks, and the maintenance of genome integrity. Mutat Res. 616:46-59.
22. Hughes MK, Hughes AL. 1995. Natural selection on Plasmodium surface proteins. Mol Biochem Parasitol. 71:99-113.
23. Knudsen GM,Medzihradszky KF, Lim K-C, Hansell E,McKerrow JH. 2005. Proteomic analysis of Schistosoma mansoni cercarial secretions. Mol Cell Proteomics. 4:1862-1875.
24. Lawton SP, Hirai H, Ironside JE, Johnston DA, Rollinson D. 2011. Genomes and geography: genomic insights into the evolution and phylogeography of the genus Schistosoma. Parasit Vectors. 4:131.
25. Li X-H, et al. 2013. The schistosome oesophageal gland: initiator of blood processing. PLoS Negl Trop Dis. 7:e2337.
26. Mathieson W, Wilson RA. 2010. A comparative proteomic study of the undeveloped and developed Schistosoma mansoni egg and its contents: the miracidium, hatch fluid and secretions. Int J Parasitol. 40: 617-628.
27. Milne TJ, Abbenante G, Tyndall JDA, Halliday J, Lewis RJ. 2003. Isolation and characterization of a cone snail protease with homology to CRISP proteins of the pathogenesis-related protein superfamily. J Biol Chem. 278:31105-31110.
28. Olson JH, et al. 2001. Allurin, a 21-kDa sperm chemoattractant from Xenopus egg jelly, is related to mammalian sperm-binding proteins. Proc Natl Acad Sci U S A. 98:11205-11210.
29. Page RDM. 1996. Tree View: an application to display phylogenetic trees on personal computers. Comput Appl Biosci. 12:357-358.
30. Parker-Manuel SJ, Ivens AC, Dillon GP, Wilson RA. 2011. Gene expression patterns in larval Schistosomamansoni associated with infection of the mammalian host. PLoS Negl Trop Dis. 5:e1274.
31. Protasio AV, et al. 2012. A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni. PLoS Negl Trop Dis. 6:e1455.
32. Rofatto HK, et al. 2012. Tissue expression patterns of Schistosoma mansoni Venom Allergen-Like proteins 6 and 7. Int J Parasitol. 42:613-620.
33. Schistosoma japonicum Genome Sequencing and Functional Analysis Consortium. 2009. The Schistosoma japonicum genome reveals features of host-parasite interplay. Nature 460:345-351.
34. Sealey KL, Kirk RS, Walker AJ, Rollinson D, Lawton SP. 2013. Adaptive radiation within the vaccine target tetraspanin-23 across nine Schistosoma species from Africa. Int J Parasitol. 43:95-103.
35. Silva LL, et al. 2012. The Schistosomamansoni phylome: using evolutionary genomics to gain insight into a parasite's biology. BMC Genomics 13: 617.
36. TaweW, Pearlman E, Unnasch TR, Lustigman S. 2000. Angiogenic activity of Onchocerca volvulus recombinant proteins similar to vespid venom antigen 5. Mol Biochem Parasitol. 109:91-99.
37. Tran MH, et al. 2006. Tetraspanins on the surface of Schistosomamansoni are protective antigens against schistosomiasis. NatMed. 12:835-840.
38. Venancio TM,Wilson RA, Verjovski-Almeida S, DeMarco R. 2010. Bursts of transposition from non-long terminal repeat retrotransposon families of the RTE clade in Schistosoma mansoni. Int J Parasitol. 40:743-749.
39. Verjovski-Almeida S, DeMarco R. 2011. Gene structure and splicing in schistosomes. J Proteomics. 74:1515-1518.
40. Wernersson R, Pedersen AG. 2003. RevTrans: multiple alignment of coding DNA from aligned amino acid sequences. Nucleic Acids Res. 31:3537-3539.
41. Wilson RA. 2012. Proteomics at the schistosome-mammalian host interface: any prospects for diagnostics or vaccines? Parasitology 139: 1178-1194.
42. Xu S, Benoff B, Liou H-L, Lobel P, Stock AM. 2007. Structural basis of sterol binding by NPC2, a lysosomal protein deficient in Niemann-Pick type C2 disease. J Biol Chem. 282:23525-23531.
43. Yang Z, Bielawski JP. 2000. Statistical methods for detecting molecular adaptation. Trends Ecol Evol. 15:496-503.
44. Young ND, et al. 2012. Whole-genome sequence of Schistosoma haematobium. Nat Genet. 44:221-225.
45. Zhang H, et al. 2013. Gene copy-number variation in haploid and diploid strains of the yeast Saccharomyces cerevisiae. Genetics 193:785-801.
46. Zhang W, et al. 2011. Inconsistent protective efficacy and marked polymorphism limits the value of Schistosoma japonicum tetraspanin-2 as a vaccine target. PLoS Negl Trop Dis. 5:e1166.