메뉴 건너뛰기




Volumn 22, Issue , 2015, Pages 75-84

Mitochondrial DNA haplogroup phylogeny of the dog: Proposal for a cladistic nomenclature

Author keywords

Canis lupus familiaris; Cladistic; Dog; Haplogroup; Mitochondrial DNA; Nomenclature

Indexed keywords

MITOCHONDRIAL DNA;

EID: 84928139653     PISSN: 15677249     EISSN: 18728278     Source Type: Journal    
DOI: 10.1016/j.mito.2015.04.001     Document Type: Article
Times cited : (11)

References (52)
  • 1
    • 33747336678 scopus 로고    scopus 로고
    • Ancient origin and evolution of the Indian wolf: evidence from mitochondrial DNA typing of wolves from Trans-Himalayan region and Peninsular India
    • Aggarwal R.K., Ramadevi J., Singh L. Ancient origin and evolution of the Indian wolf: evidence from mitochondrial DNA typing of wolves from Trans-Himalayan region and Peninsular India. Genome Biol. 2003, 4:P6.
    • (2003) Genome Biol. , vol.4 , pp. P6
    • Aggarwal, R.K.1    Ramadevi, J.2    Singh, L.3
  • 2
    • 84863319439 scopus 로고    scopus 로고
    • Comprehensive study of mtDNA among Southwest Asian dogs contradicts independent domestication of wolf, but implies dog-wolf hybridization
    • Ardalan A., Kluetsch C.F., Zhang A.B., Erdogan M., Uhlen M., Houshmand M., Tepeli C., Ashtiani S.R., Savolainen P. Comprehensive study of mtDNA among Southwest Asian dogs contradicts independent domestication of wolf, but implies dog-wolf hybridization. Ecol. Evol. 2011, 1:373-385.
    • (2011) Ecol. Evol. , vol.1 , pp. 373-385
    • Ardalan, A.1    Kluetsch, C.F.2    Zhang, A.B.3    Erdogan, M.4    Uhlen, M.5    Houshmand, M.6    Tepeli, C.7    Ashtiani, S.R.8    Savolainen, P.9
  • 4
    • 0032900678 scopus 로고    scopus 로고
    • Median-joining networks for inferring intraspecific phylogenies
    • Bandelt H.J., Forster P., Rohl A. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 1999, 16:37-48.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 37-48
    • Bandelt, H.J.1    Forster, P.2    Rohl, A.3
  • 6
    • 33746731132 scopus 로고    scopus 로고
    • Relaxation of selective constraint on dog mitochondrial DNA following domestication
    • Bjornerfeldt S., Webster M.T., Vila C. Relaxation of selective constraint on dog mitochondrial DNA following domestication. Genome Res. 2006, 16:990-994.
    • (2006) Genome Res. , vol.16 , pp. 990-994
    • Bjornerfeldt, S.1    Webster, M.T.2    Vila, C.3
  • 9
    • 84873839807 scopus 로고    scopus 로고
    • Ancient DNA evidence for genetic continuity in arctic dogs
    • Brown S.K., Darwent C.M., Sacks B.N. Ancient DNA evidence for genetic continuity in arctic dogs. J. Archaeol. Sci. 2013, 40:1279-1288.
    • (2013) J. Archaeol. Sci. , vol.40 , pp. 1279-1288
    • Brown, S.K.1    Darwent, C.M.2    Sacks, B.N.3
  • 11
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
    • (2007) BMC Evol. Biol. , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 13
    • 58149123802 scopus 로고    scopus 로고
    • An evaluation of genetic analyses, skull morphology and visual appearance for assessing dingo purity: implications for dingo conservation
    • Elledge A.E., Allen L.R., Carlsson B.L., Wilton A.N., Leung L.K.P. An evaluation of genetic analyses, skull morphology and visual appearance for assessing dingo purity: implications for dingo conservation. Wildl. Res. 2008, 35:812-820.
    • (2008) Wildl. Res. , vol.35 , pp. 812-820
    • Elledge, A.E.1    Allen, L.R.2    Carlsson, B.L.3    Wilton, A.N.4    Leung, L.K.P.5
  • 15
    • 79251599859 scopus 로고    scopus 로고
    • HaploSearch: a tool for haplotype-sequence two-way transformation
    • Fregel R., Delgado S. HaploSearch: a tool for haplotype-sequence two-way transformation. Mitochondrion 2011, 11:366-367.
    • (2011) Mitochondrion , vol.11 , pp. 366-367
    • Fregel, R.1    Delgado, S.2
  • 16
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 1999, 41:95-98.
    • (1999) Nucleic Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 17
    • 84863775244 scopus 로고    scopus 로고
    • Identification of single nucleotide polymorphisms within the mtDNA genome of the domestic dog to discriminate individuals with common HVI haplotypes
    • Imes D.L., Wictum E.J., Allard M.W., Sacks B.N. Identification of single nucleotide polymorphisms within the mtDNA genome of the domestic dog to discriminate individuals with common HVI haplotypes. Forensic Sci. Int. Genet. 2012, 6:630-639.
    • (2012) Forensic Sci. Int. Genet. , vol.6 , pp. 630-639
    • Imes, D.L.1    Wictum, E.J.2    Allard, M.W.3    Sacks, B.N.4
  • 18
    • 43149087535 scopus 로고    scopus 로고
    • New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree
    • Karafet T.M., Mendez F.L., Meilerman M.B., Underhill P.A., Zegura S.L., Hammer M.F. New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Genome Res. 2008, 18:830-838.
    • (2008) Genome Res. , vol.18 , pp. 830-838
    • Karafet, T.M.1    Mendez, F.L.2    Meilerman, M.B.3    Underhill, P.A.4    Zegura, S.L.5    Hammer, M.F.6
  • 19
    • 0032176078 scopus 로고    scopus 로고
    • The complete nucleotide sequence of the domestic dog (Canis familiaris) mitochondrial genome
    • Kim K.S., Lee S.E., Jeong H.W., Ha J.H. The complete nucleotide sequence of the domestic dog (Canis familiaris) mitochondrial genome. Mol. Phylogenet. Evol. 1998, 10:210-220.
    • (1998) Mol. Phylogenet. Evol. , vol.10 , pp. 210-220
    • Kim, K.S.1    Lee, S.E.2    Jeong, H.W.3    Ha, J.H.4
  • 21
    • 78651382459 scopus 로고    scopus 로고
    • Regional occurrence, high frequency but low diversity of mitochondrial DNA haplogroup d1 suggests a recent dog-wolf hybridization in Scandinavia
    • Klutsch C.F., Seppala E.H., Fall T., Uhlen M., Hedhammar A., Lohi H., Savolainen P. Regional occurrence, high frequency but low diversity of mitochondrial DNA haplogroup d1 suggests a recent dog-wolf hybridization in Scandinavia. Anim. Genet. 2011, 42:100-103.
    • (2011) Anim. Genet. , vol.42 , pp. 100-103
    • Klutsch, C.F.1    Seppala, E.H.2    Fall, T.3    Uhlen, M.4    Hedhammar, A.5    Lohi, H.6    Savolainen, P.7
  • 24
    • 79960004119 scopus 로고    scopus 로고
    • Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
    • Letunic I., Bork P. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res. 2011, 39:W475-W478.
    • (2011) Nucleic Acids Res. , vol.39 , pp. W475-W478
    • Letunic, I.1    Bork, P.2
  • 25
    • 78650564597 scopus 로고    scopus 로고
    • Complete sequence of the Tibetan Mastiff mitochondrial genome and its phylogenetic relationship with other Canids (Canis, Canidae)
    • Li Y., Li Q., Zhao X., Xie Z., Xu Y. Complete sequence of the Tibetan Mastiff mitochondrial genome and its phylogenetic relationship with other Canids (Canis, Canidae). Animal 2011, 5:18-25.
    • (2011) Animal , vol.5 , pp. 18-25
    • Li, Y.1    Li, Q.2    Zhao, X.3    Xie, Z.4    Xu, Y.5
  • 28
    • 84876519306 scopus 로고    scopus 로고
    • Ultrafast approximation for phylogenetic bootstrap
    • Minh B.Q., Nguyen M.A., von Haeseler A. Ultrafast approximation for phylogenetic bootstrap. Mol. Biol. Evol. 2013, 30:1188-1195.
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 1188-1195
    • Minh, B.Q.1    Nguyen, M.A.2    von Haeseler, A.3
  • 29
    • 0030338061 scopus 로고    scopus 로고
    • Intra- and interbreed genetic variations of mitochondrial DNA major non-coding regions in Japanese native dog breeds (Canis familiaris)
    • Okumura N., Ishiguro N., Nakano M., Matsui A., Sahara M. Intra- and interbreed genetic variations of mitochondrial DNA major non-coding regions in Japanese native dog breeds (Canis familiaris). Anim. Genet. 1996, 27:397-405.
    • (1996) Anim. Genet. , vol.27 , pp. 397-405
    • Okumura, N.1    Ishiguro, N.2    Nakano, M.3    Matsui, A.4    Sahara, M.5
  • 30
    • 84856256905 scopus 로고    scopus 로고
    • Mitochondrial DNA data indicate an introduction through Mainland Southeast Asia for Australian dingoes and Polynesian domestic dogs
    • Oskarsson M.C., Klutsch C.F., Boonyaprakob U., Wilton A., Tanabe Y., Savolainen P. Mitochondrial DNA data indicate an introduction through Mainland Southeast Asia for Australian dingoes and Polynesian domestic dogs. Proc. Biol. Sci. 2011, 279:967-974.
    • (2011) Proc. Biol. Sci. , vol.279 , pp. 967-974
    • Oskarsson, M.C.1    Klutsch, C.F.2    Boonyaprakob, U.3    Wilton, A.4    Tanabe, Y.5    Savolainen, P.6
  • 32
    • 38749087597 scopus 로고    scopus 로고
    • Genetic differentiation in pointing dog breeds inferred from microsatellites and mitochondrial DNA sequence
    • Parra D., Mendez S., Canon J., Dunner S. Genetic differentiation in pointing dog breeds inferred from microsatellites and mitochondrial DNA sequence. Anim. Genet. 2008, 39:1-7.
    • (2008) Anim. Genet. , vol.39 , pp. 1-7
    • Parra, D.1    Mendez, S.2    Canon, J.3    Dunner, S.4
  • 33
    • 1842450924 scopus 로고    scopus 로고
    • Standardisation of nomenclature for dog mtDNA D-loop: a prerequisite for launching a Canis familiaris database
    • Pereira L., Van Asch B., Amorim A. Standardisation of nomenclature for dog mtDNA D-loop: a prerequisite for launching a Canis familiaris database. Forensic Sci. Int. 2004, 141:99-108.
    • (2004) Forensic Sci. Int. , vol.141 , pp. 99-108
    • Pereira, L.1    Van Asch, B.2    Amorim, A.3
  • 35
    • 0036245438 scopus 로고    scopus 로고
    • Genealogical trees, coalescent theory and the analysis of genetic polymorphisms
    • Rosenberg N.A., Nordborg M. Genealogical trees, coalescent theory and the analysis of genetic polymorphisms. Nat. Rev. Genet. 2002, 3:380-390.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 380-390
    • Rosenberg, N.A.1    Nordborg, M.2
  • 36
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S., Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 2000, 132:365-386.
    • (2000) Methods Mol. Biol. , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 37
    • 84876536191 scopus 로고    scopus 로고
    • Y chromosome analysis of dingoes and Southeast Asian village dogs suggests a neolithic continental expansion from Southeast Asia followed by multiple Austronesian dispersals
    • Sacks B.N., Brown S.K., Stephens D., Pedersen N.C., Wu J.T., Berry O. Y chromosome analysis of dingoes and Southeast Asian village dogs suggests a neolithic continental expansion from Southeast Asia followed by multiple Austronesian dispersals. Mol. Biol. Evol. 2013, 30:1103-1118.
    • (2013) Mol. Biol. Evol. , vol.30 , pp. 1103-1118
    • Sacks, B.N.1    Brown, S.K.2    Stephens, D.3    Pedersen, N.C.4    Wu, J.T.5    Berry, O.6
  • 38
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 39
    • 2242463993 scopus 로고    scopus 로고
    • Genetic evidence for an East Asian origin of domestic dogs
    • Savolainen P., Zhang Y.P., Luo J., Lundeberg J., Leitner T. Genetic evidence for an East Asian origin of domestic dogs. Science 2002, 298:1610-1613.
    • (2002) Science , vol.298 , pp. 1610-1613
    • Savolainen, P.1    Zhang, Y.P.2    Luo, J.3    Lundeberg, J.4    Leitner, T.5
  • 42
    • 84879696086 scopus 로고    scopus 로고
    • Genetic characterization, at the mitochondrial and nuclear DNA levels, of five Canary Island dog breeds
    • Suarez N.M., Betancor E., Fregel R., Pestano J. Genetic characterization, at the mitochondrial and nuclear DNA levels, of five Canary Island dog breeds. Anim. Genet. 2013, 44:432-441.
    • (2013) Anim. Genet. , vol.44 , pp. 432-441
    • Suarez, N.M.1    Betancor, E.2    Fregel, R.3    Pestano, J.4
  • 43
    • 0036513041 scopus 로고    scopus 로고
    • Lineage classification of canine inheritable disorders using mitochondrial DNA haplotypes
    • Takahasi S., Miyahara K., Ishikawa H., Ishiguro N., Suzuki M. Lineage classification of canine inheritable disorders using mitochondrial DNA haplotypes. J. Vet. Med. Sci. 2002, 64:255-259.
    • (2002) J. Vet. Med. Sci. , vol.64 , pp. 255-259
    • Takahasi, S.1    Miyahara, K.2    Ishikawa, H.3    Ishiguro, N.4    Suzuki, M.5
  • 45
    • 0030810253 scopus 로고    scopus 로고
    • Extensive interbreeding occurred among multiple matriarchal ancestors during the domestication of dogs: evidence from inter- and intraspecies polymorphisms in the D-loop region of mitochondrial DNA between dogs and wolves
    • Tsuda K., Kikkawa Y., Yonekawa H., Tanabe Y. Extensive interbreeding occurred among multiple matriarchal ancestors during the domestication of dogs: evidence from inter- and intraspecies polymorphisms in the D-loop region of mitochondrial DNA between dogs and wolves. Genes Genet. Syst. 1997, 72:229-238.
    • (1997) Genes Genet. Syst. , vol.72 , pp. 229-238
    • Tsuda, K.1    Kikkawa, Y.2    Yonekawa, H.3    Tanabe, Y.4
  • 46
    • 26444602094 scopus 로고    scopus 로고
    • MtDNA diversity among four Portuguese autochthonous dog breeds: a fine-scale characterisation
    • van Asch B., Pereira L., Pereira F., Santa-Rita P., Lima M., Amorim A. MtDNA diversity among four Portuguese autochthonous dog breeds: a fine-scale characterisation. BMC Genet. 2005, 6.
    • (2005) BMC Genet. , vol.6
    • van Asch, B.1    Pereira, L.2    Pereira, F.3    Santa-Rita, P.4    Lima, M.5    Amorim, A.6
  • 47
    • 84887730995 scopus 로고    scopus 로고
    • Pre-Columbian origins of Native American dog breeds, with only limited replacement by European dogs, confirmed by mtDNA analysis
    • van Asch B., Zhang A.B., Oskarsson M.C., Klutsch C.F., Amorim A., Savolainen P. Pre-Columbian origins of Native American dog breeds, with only limited replacement by European dogs, confirmed by mtDNA analysis. Proc. Biol. Sci. 2013, 280:20131142.
    • (2013) Proc. Biol. Sci. , vol.280 , pp. 20131142
    • van Asch, B.1    Zhang, A.B.2    Oskarsson, M.C.3    Klutsch, C.F.4    Amorim, A.5    Savolainen, P.6
  • 48
    • 64049089255 scopus 로고    scopus 로고
    • Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation
    • van Oven M., Kayser M. Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation. Hum. Mutat. 2009, 30:E386-E394.
    • (2009) Hum. Mutat. , vol.30 , pp. E386-E394
    • van Oven, M.1    Kayser, M.2
  • 50
    • 0025760031 scopus 로고
    • Molecular distance and divergence time in carnivores and primates
    • Wayne R.K., Van Valkenburgh B., O'Brien S.J. Molecular distance and divergence time in carnivores and primates. Mol. Biol. Evol. 1991, 8:297-319.
    • (1991) Mol. Biol. Evol. , vol.8 , pp. 297-319
    • Wayne, R.K.1    Van Valkenburgh, B.2    O'Brien, S.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.