Standardisation of nomenclature for dog mtDNA D-loop: A prerequisite for launching a Canis familiaris database

Forensic Science International

Volumn 141, Issue 2-3, 2004, Pages 99-108

  Pereira, Luísa ^a   Van Asch, Bárbara ^a   Amorim, António ^a  

^a UNIVERSITY OF PORTO   (Portugal)

Author keywords

Canis familiaris; Database; Dogs; MtDNA

Indexed keywords

MITOCHONDRIAL DNA;

DNA DETERMINATION; DNA SEQUENCE; DOG; GENETIC DATABASE; GENETIC POLYMORPHISM; HAPLOTYPE; HUMAN; NOMENCLATURE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REVIEW; STANDARDIZATION; UNINDEXED SEQUENCE;

EID: 1842450924     PISSN: 03790738     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.forsciint.2003.12.014     Document Type: Article

References (22)

1. Richards M., Macaulay V. The mitochondrial gene tree comes of age. Am. J. Hum. Genet. 68:2001;1315-1320.
2. Carracedo A., Bar W., Lincoln P., Mayr W., Morling N., Olaisen B., Schneider P., Budowle B., Brinkmann B., Gill P., Holland M., Tully G., Wilson M. DNA commission of the international society for forensic genetics: guidelines for mitochondrial DNA typing. Forensic Sci. Int. 110:2000;79-85.
3. Savolainen P., Zhang Y.P., Luo J., Lundeberg J., Leitner T. Genetic evidence for an East Asian origin of domestic dogs. Science. 298:2002;1610-1613.
4. Savolainen P., Rosen B., Holmberg A., Leitner T., Uhlen M., Lundeberg J. Sequence analysis of domestic dog mitochondrial DNA for forensic use. J. Forensic Sci. 42:1997;593-600.
5. Savolainen P., Lundeberg J. Forensic evidence based on mtDNA from dog and wolf hairs. J. Forensic Sci. 44:1999;77-81.
6. Wetton J.H., Higgs J.E., Spriggs A.C., Roney C.A., Tsang C.S., Foster A.P. Mitochondrial profiling of dog hairs. Forensic Sci. Int. 133:2003;235-241.
7. Leonard J.A., Wayne R.K., Wheeler J., Valadez R., Guillen S., Vila C. Ancient DNA evidence for old world origin of new world dogs. Science. 298:2002;1613-1616.
8. Kuehn B.M. Breed discrimination bites homeowners: insurance companies dropping home insurance coverage for owners of large dog breeds. J. Am. Vet. Med. Assoc. 222:2003;1337-1338.
9. Dobson J.M., Samuel S., Milstein H., Rogers K., Wood J.L. Canine neoplasia in the UK: estimates of incidence rates from a population of insured dogs. J. Small Anim. Pract. 43:2002;240-246.
10. Anderson S., Bankier A.T., Barrell B.G., de Bruijn M.H., Coulson A.R., Drouin J., Eperon I.C., Nierlich D.P., Roe B.A., Sanger F., Schreier P.H., Smith A.J., Staden R., Young I.G. Sequence and organization of the human mitochondrial genome. Nature. 290:1981;457-465.
11. Andrews R.M., Kubacka I., Chinnery P.F., Lightowlers R.N., Turnbull D.M., Howell N. Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat. Genet. 23:1999;147.
12. Vila C., Savolainen P., Maldonado J.E., Amorim I.R., Rice J.E., Honeycutt R.L., Crandall K.A., Lundeberg J., Wayne R.K. Multiple and ancient origins of the domestic dog. Science. 276:1997;1687-1689.
13. Kim K.S., Lee S.E., Jeong H.W., Ha J.H. The complete nucleotide sequence of the domestic dog (Canis familiaris) mitochondrial genome. Mol. Phylogenet. E. 10:1998;210-220.
14. Takahasi S., Miyahara K., Ishikawa H., Ishiguro N., Suzuki M. Lineage classification of canine inheritable disorders using mitochondrial DNA haplotypes. J. Vet. Med. Sci. 64:2002;255-259.
15. Kim K.S., Jeong H.W., Park C.K., Ha J.H. Suitability of AFLP markers for the study of genetic relationships among Korean native dogs. Genes Genet. Syst. 76:2001;243-250.
16. Savolainen P., Arvestad L., Lundeberg J. A novel method for forensic DNA investigations: repeat-type sequence analysis of tandemly repeated mtDNA in domestic dogs. J. Forensic Sci. 45:2000;990-999.
17. Okumura N., Ishiguro N., Nakano M., Matsui A., Saharal M. Intra- and interbreed genetic variations of mitochondrial DNA major non-coding regions in Japanese native dog breeds (Canis familiaris). Anim. Genet. 27:1996;397-405.
18. Wilson M.R., Allard M.W., Monson K., Miller K.W., Budowle B. Recommendations for consistent treatment of length variants in the human mitochondrial DNA control region. Forensic Sci. Int. 129:2002;35-42.
19. Wilson M.R., Allard M.W., Monson K., Miller K.W., Budowle B. Further discussion of the consistent treatment of length variants in the human mitochondrial DNA control region. Forensic Sci. Commun. 4:2002;4.
20. Y Chromosome Consortium, A nomenclature system for the tree of human Y-chromosomal binary haplogroups, Genome Res. 12 (2002) 339-348.
21. Schneider P.M., Seo Y., Rittner C. Forensic mtDNA hair analysis excludes a dog from having caused a traffic accident. Int. J. Legal Med. 112:1999;315-316.
22. Tsuda K., Kikkawa Y., Yonekawa H., Tanabe Y. Extensive interbreeding occurred among multiple matriarchal ancestors during the domestication of dogs: evidence from inter- and intraspecies polymorphisms in the D-loop region of mitochondrial DNA between dogs and wolves. Genes Genet. Syst. 72:1997;229-238.