-
1
-
-
84861346969
-
A metagenome of a full-scale microbial community carrying out enhanced biological phosphorus removal
-
Albertsen, M., Hansen, L.B.S., Saunders, A.M., Nielsen, P.H., and Nielsen, K.L. (2012) A metagenome of a full-scale microbial community carrying out enhanced biological phosphorus removal. ISME J 6: 1094-1106.
-
(2012)
ISME J
, vol.6
, pp. 1094-1106
-
-
Albertsen, M.1
Hansen, L.B.S.2
Saunders, A.M.3
Nielsen, P.H.4
Nielsen, K.L.5
-
2
-
-
84879678051
-
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
-
Albertsen, M., Hugenholtz, P., Skarshewski, A., Nielsen, K.L., Tyson, G.W., and Nielsen, P.H. (2013) Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes. Nat Biotechnol 31: 533-538.
-
(2013)
Nat Biotechnol
, vol.31
, pp. 533-538
-
-
Albertsen, M.1
Hugenholtz, P.2
Skarshewski, A.3
Nielsen, K.L.4
Tyson, G.W.5
Nielsen, P.H.6
-
3
-
-
84908597294
-
Binning metagenomic contigs by coverage and composition
-
Alneberg, J., Bjarnason, B.S., de Bruijn, I., Schirmer, M., Quick, J., Ijaz, U.Z., etal. (2014) Binning metagenomic contigs by coverage and composition. Nat Methods 11: 1-7.
-
(2014)
Nat Methods
, vol.11
, pp. 1-7
-
-
Alneberg, J.1
Bjarnason, B.S.2
de Bruijn, I.3
Schirmer, M.4
Quick, J.5
Ijaz, U.Z.6
-
4
-
-
84887618970
-
Advances in metabolic pathway and strain engineering paving the way for sustainable production of chemical building blocks
-
Chen, Y., and Nielsen, J. (2013) Advances in metabolic pathway and strain engineering paving the way for sustainable production of chemical building blocks. Curr Opin Biotechnol 24: 965-972.
-
(2013)
Curr Opin Biotechnol
, vol.24
, pp. 965-972
-
-
Chen, Y.1
Nielsen, J.2
-
5
-
-
33749578843
-
Wastewater treatment: a model system for microbial ecology
-
Daims, H., Taylor, M.W., and Wagner, M. (2006) Wastewater treatment: a model system for microbial ecology. Trends Biotechnol 24: 483-489.
-
(2006)
Trends Biotechnol
, vol.24
, pp. 483-489
-
-
Daims, H.1
Taylor, M.W.2
Wagner, M.3
-
6
-
-
77951498518
-
AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature
-
Denef, V.J., Mueller, R.S., and Banfield, J.F. (2010) AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature. ISME J 4: 599-610.
-
(2010)
ISME J
, vol.4
, pp. 599-610
-
-
Denef, V.J.1
Mueller, R.S.2
Banfield, J.F.3
-
7
-
-
84864035417
-
Microbial metaproteomics: identifying the repertoire of proteins that microorganisms use to compete and cooperate in complex environmental communities
-
Hettich, R.L., Sharma, R., Chourey, K., and Giannone, R.J. (2012) Microbial metaproteomics: identifying the repertoire of proteins that microorganisms use to compete and cooperate in complex environmental communities. Curr Opin Microbiol 15: 373-380.
-
(2012)
Curr Opin Microbiol
, vol.15
, pp. 373-380
-
-
Hettich, R.L.1
Sharma, R.2
Chourey, K.3
Giannone, R.J.4
-
8
-
-
34249950990
-
Raman-FISH: combining stable-isotope Raman spectroscopy and fluorescence in situ hybridization for the single cell analysis of identity and function
-
Huang, W.E., Stoecker, K., Griffiths, R., Newbold, L., Daims, H., Whiteley, A.S., and Wagner, M. (2007) Raman-FISH: combining stable-isotope Raman spectroscopy and fluorescence in situ hybridization for the single cell analysis of identity and function. Environ Microbiol 9: 1878-1889.
-
(2007)
Environ Microbiol
, vol.9
, pp. 1878-1889
-
-
Huang, W.E.1
Stoecker, K.2
Griffiths, R.3
Newbold, L.4
Daims, H.5
Whiteley, A.S.6
Wagner, M.7
-
9
-
-
84897374590
-
Alignment-free visualization of metagenomic data by nonlinear dimension reduction
-
Laczny, C.C., Pinel, N., Vlassis, N., and Wilmes, P. (2014) Alignment-free visualization of metagenomic data by nonlinear dimension reduction. Sci Rep 4: 4516: 1-12.
-
(2014)
Sci Rep
, vol.4
, pp. 1-12
-
-
Laczny, C.C.1
Pinel, N.2
Vlassis, N.3
Wilmes, P.4
-
10
-
-
84911861819
-
IVT-seq reveals extreme bias in RNA-sequencing
-
Lahens, N.F., Kavakli, I.H., Zhang, R., Hayer, K., Black, M.B., Dueck, H., etal. (2014) IVT-seq reveals extreme bias in RNA-sequencing. Genome Biol 15: R86.
-
(2014)
Genome Biol
, vol.15
, pp. R86
-
-
Lahens, N.F.1
Kavakli, I.H.2
Zhang, R.3
Hayer, K.4
Black, M.B.5
Dueck, H.6
-
11
-
-
34548669100
-
Quantitative imaging of nitrogen fixation by individual bacteria within animal cells
-
Lechene, C.P., Luyten, Y., McMahon, G., and Distel, D.L. (2007) Quantitative imaging of nitrogen fixation by individual bacteria within animal cells. Science 317: 1563-1566.
-
(2007)
Science
, vol.317
, pp. 1563-1566
-
-
Lechene, C.P.1
Luyten, Y.2
McMahon, G.3
Distel, D.L.4
-
12
-
-
57049098094
-
Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels
-
Lee, S.K., Chou, H., Ham, T.S., Lee, T.S., and Keasling, J.D. (2008) Metabolic engineering of microorganisms for biofuels production: from bugs to synthetic biology to fuels. Curr Opin Biotechnol 19: 556-563.
-
(2008)
Curr Opin Biotechnol
, vol.19
, pp. 556-563
-
-
Lee, S.K.1
Chou, H.2
Ham, T.S.3
Lee, T.S.4
Keasling, J.D.5
-
13
-
-
52949088250
-
Environmental genomics reveals a functional chlorite dismutase in the nitrite-oxidizing bacterium 'Candidatus Nitrospira defluvii'
-
Maixner, F., Wagner, M., Lücker, S., Pelletier, E., Schmitz-esser, S., Hace, K., etal. (2008) Environmental genomics reveals a functional chlorite dismutase in the nitrite-oxidizing bacterium 'Candidatus Nitrospira defluvii'. Environ Microbiol 10: 3043-3056.
-
(2008)
Environ Microbiol
, vol.10
, pp. 3043-3056
-
-
Maixner, F.1
Wagner, M.2
Lücker, S.3
Pelletier, E.4
Schmitz-esser, S.5
Hace, K.6
-
14
-
-
77955312030
-
Exploring research frontiers in microbiology: the challenge of metagenomics in soil microbiology
-
Mocali, S., and Benedetti, A. (2010) Exploring research frontiers in microbiology: the challenge of metagenomics in soil microbiology. Res Microbiol 161: 497-505.
-
(2010)
Res Microbiol
, vol.161
, pp. 497-505
-
-
Mocali, S.1
Benedetti, A.2
-
15
-
-
84879787915
-
Condensing the omics fog of microbial communities
-
Muller, E.E.L., Glaab, E., May, P., Vlassis, N., and Wilmes, P. (2013) Condensing the omics fog of microbial communities. Trends Microbiol 21: 325-333.
-
(2013)
Trends Microbiol
, vol.21
, pp. 325-333
-
-
Muller, E.E.L.1
Glaab, E.2
May, P.3
Vlassis, N.4
Wilmes, P.5
-
16
-
-
84899058250
-
Lipid-based biofuel production from wastewater
-
Muller, E.E.L., Sheik, A.R., and Wilmes, P. (2014) Lipid-based biofuel production from wastewater. Curr Opin Biotechnol 30C: 9-16.
-
(2014)
Curr Opin Biotechnol
, vol.30 C
, pp. 9-16
-
-
Muller, E.E.L.1
Sheik, A.R.2
Wilmes, P.3
-
17
-
-
84923224630
-
Community integrated omics links the dominance of a microbial generalist to fine-tuned resource usage
-
1-10.
-
Muller, E.E.L., Pinel, N., Laczny, C.C., Hoopmann, M.R., Narayanasamy, S., Lebrun, L.A., etal. (2014) Community integrated omics links the dominance of a microbial generalist to fine-tuned resource usage. Nat Commun. 5: 5603; 1-10.
-
(2014)
Nat Commun.
, vol.5
, pp. 5603
-
-
Muller, E.E.L.1
Pinel, N.2
Laczny, C.C.3
Hoopmann, M.R.4
Narayanasamy, S.5
Lebrun, L.A.6
-
18
-
-
84856716159
-
Detecting metabolic activities in single cells, with emphasis on nanoSIMS
-
Musat, N., Foster, R., Vagner, T., Adam, B., and Kuypers, M.M.M. (2012) Detecting metabolic activities in single cells, with emphasis on nanoSIMS. FEMS Microbiol Rev 36: 486-511.
-
(2012)
FEMS Microbiol Rev
, vol.36
, pp. 486-511
-
-
Musat, N.1
Foster, R.2
Vagner, T.3
Adam, B.4
Kuypers, M.M.M.5
-
19
-
-
84905730761
-
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
-
Nielsen, H.B., Almeida, M., Juncker, A.S., Rasmussen, S., Li, J., Sunagawa, S., etal. (2014) Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. Nat Biotechnol 32: 1-11.
-
(2014)
Nat Biotechnol
, vol.32
, pp. 1-11
-
-
Nielsen, H.B.1
Almeida, M.2
Juncker, A.S.3
Rasmussen, S.4
Li, J.5
Sunagawa, S.6
-
20
-
-
84865142847
-
Microbial engineering for the production of advanced biofuels
-
Peralta-Yahya, P.P., Zhang, F., del Cardayre, S.B., and Keasling, J.D. (2012) Microbial engineering for the production of advanced biofuels. Nature 488: 320-328.
-
(2012)
Nature
, vol.488
, pp. 320-328
-
-
Peralta-Yahya, P.P.1
Zhang, F.2
del Cardayre, S.B.3
Keasling, J.D.4
-
21
-
-
34250835050
-
Production of dimethylfuran for liquid fuels from biomass-derived carbohydrates
-
Román-Leshkov, Y., Barrett, C.J., Liu, Z.Y., and Dumesic, J.A. (2007) Production of dimethylfuran for liquid fuels from biomass-derived carbohydrates. Nature 447: 982-985.
-
(2007)
Nature
, vol.447
, pp. 982-985
-
-
Román-Leshkov, Y.1
Barrett, C.J.2
Liu, Z.Y.3
Dumesic, J.A.4
-
22
-
-
77956647726
-
Systems approaches to microbial communities and their functioning
-
Röling, W.F.M., Ferrer, M., and Golyshin, P.N. (2010) Systems approaches to microbial communities and their functioning. Curr Opin Biotechnol 21: 532-538.
-
(2010)
Curr Opin Biotechnol
, vol.21
, pp. 532-538
-
-
Röling, W.F.M.1
Ferrer, M.2
Golyshin, P.N.3
-
23
-
-
84884539107
-
Sequential isolation of metabolites, RNA, DNA, and proteins from the same unique sample
-
Roume, H., Heintz-Buschart, A., Muller, E.E.L., and Wilmes, P. (2013a) Sequential isolation of metabolites, RNA, DNA, and proteins from the same unique sample. Methods Enzymol 531: 219-236.
-
(2013)
Methods Enzymol
, vol.531
, pp. 219-236
-
-
Roume, H.1
Heintz-Buschart, A.2
Muller, E.E.L.3
Wilmes, P.4
-
24
-
-
84871363554
-
A biomolecular isolation framework for eco-systems biology
-
Roume, H., Muller, E.E.L., Cordes, T., Renaut, J., Hiller, K., and Wilmes, P. (2013b) A biomolecular isolation framework for eco-systems biology. ISME J 7: 110-121.
-
(2013)
ISME J
, vol.7
, pp. 110-121
-
-
Roume, H.1
Muller, E.E.L.2
Cordes, T.3
Renaut, J.4
Hiller, K.5
Wilmes, P.6
-
25
-
-
84881548286
-
Computational meta'omics for microbial community studies
-
1-15.
-
Segata, N., Boernigen, D., Tickle, T.L., Morgan, X.C., Garrett, W.S., and Huttenhower, C. (2013) Computational meta'omics for microbial community studies. Mol Syst Biol 9: 666; 1-15.
-
(2013)
Mol Syst Biol
, vol.9
, pp. 666
-
-
Segata, N.1
Boernigen, D.2
Tickle, T.L.3
Morgan, X.C.4
Garrett, W.S.5
Huttenhower, C.6
-
26
-
-
84897943415
-
A hundred years of activated sludge: time for a rethink
-
1-7.
-
Sheik, A.R., Muller, E.E.L., and Wilmes, P. (2014) A hundred years of activated sludge: time for a rethink. Front Microbiol 5: 47; 1-7.
-
(2014)
Front Microbiol
, vol.5
, pp. 47
-
-
Sheik, A.R.1
Muller, E.E.L.2
Wilmes, P.3
-
27
-
-
84893437280
-
Extracting data from the muck: deriving biological insight from complex microbial communities and non-model organisms with next generation sequencing
-
Solomon, K.V., Haitjema, C.H., Thompson, D.A., and O'Malley, M.A. (2014) Extracting data from the muck: deriving biological insight from complex microbial communities and non-model organisms with next generation sequencing. Curr Opin Biotechnol 28C: 103-110.
-
(2014)
Curr Opin Biotechnol
, vol.28 C
, pp. 103-110
-
-
Solomon, K.V.1
Haitjema, C.H.2
Thompson, D.A.3
O'Malley, M.A.4
-
28
-
-
84888425488
-
Linking microbial community structure, interactions and function in anaerobic digesters using new molecular techniques
-
Vanwonterghem, I., Jensen, P.D., Ho, D.P., Batstone, D.J., and Tyson, G.W. (2014) Linking microbial community structure, interactions and function in anaerobic digesters using new molecular techniques. Curr Opin Biotechnol 27: 55-64.
-
(2014)
Curr Opin Biotechnol
, vol.27
, pp. 55-64
-
-
Vanwonterghem, I.1
Jensen, P.D.2
Ho, D.P.3
Batstone, D.J.4
Tyson, G.W.5
-
29
-
-
28644431563
-
A wide host-range metagenomic library from a waste water treatment plant yields a novel alcohol/aldehyde dehydrogenase
-
Wexler, M., Bond, P.L., Richardson, D.J., and Johnston, A.W.B. (2005) A wide host-range metagenomic library from a waste water treatment plant yields a novel alcohol/aldehyde dehydrogenase. Environ Microbiol 7: 1917-1926.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1917-1926
-
-
Wexler, M.1
Bond, P.L.2
Richardson, D.J.3
Johnston, A.W.B.4
-
30
-
-
57549111277
-
The dynamic genetic repertoire of microbial communities
-
Wilmes, P., Simmons, S.L., Denef, V.J., and Banfield, J.F. (2009) The dynamic genetic repertoire of microbial communities. FEMS Microbiol Rev 33: 109-132.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 109-132
-
-
Wilmes, P.1
Simmons, S.L.2
Denef, V.J.3
Banfield, J.F.4
-
31
-
-
25444476441
-
Systematic survey reveals general applicability of 'guilt-by-association' within gene coexpression networks
-
1-10.
-
Wolfe, C.J., Kohane, I.S., and Butte, A.J. (2005) Systematic survey reveals general applicability of 'guilt-by-association' within gene coexpression networks. BMC Bioinformatics 6: 227; 1-10.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 227
-
-
Wolfe, C.J.1
Kohane, I.S.2
Butte, A.J.3
-
32
-
-
84874566601
-
Beyond the genome: community-level analysis of the microbial world
-
Zarraonaindia, I., Smith, D.P., and Gilbert, J.A. (2013) Beyond the genome: community-level analysis of the microbial world. Biol Philos 28: 261-282.
-
(2013)
Biol Philos
, vol.28
, pp. 261-282
-
-
Zarraonaindia, I.1
Smith, D.P.2
Gilbert, J.A.3
-
33
-
-
84861345451
-
454 pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants
-
Zhang, T., Shao, M.-F., and Ye, L. (2012) 454 pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants. ISME J 6: 1137-1147.
-
(2012)
ISME J
, vol.6
, pp. 1137-1147
-
-
Zhang, T.1
Shao, M.-F.2
Ye, L.3
|