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Volumn 7, Issue 1, 2013, Pages 110-121

A biomolecular isolation framework for eco-systems biology

Author keywords

biomolecules; eco systems biology; extraction; isolation; metabolomics; sample heterogeneity

Indexed keywords

DNA; LIPID; PROTEIN; RNA;

EID: 84871363554     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2012.72     Document Type: Article
Times cited : (82)

References (29)
  • 1
    • 79951576369 scopus 로고    scopus 로고
    • Improved method for simultaneous isolation of proteins and nucleic acids
    • Chey S, Claus C, Liebert UG. (2011). Improved method for simultaneous isolation of proteins and nucleic acids. Anal Biochem 411: 164-166.
    • (2011) Anal Biochem , vol.411 , pp. 164-166
    • Chey, S.1    Claus, C.2    Liebert, U.G.3
  • 2
    • 0027169767 scopus 로고
    • A reagent for the single-step simultaneous isolation of RNA, DNA and proteins from cell and tissue samples
    • Chomczynski P. (1993). A reagent for the single-step simultaneous isolation of RNA, DNA and proteins from cell and tissue samples. Biotechniques 15: 532-536.
    • (1993) Biotechniques , vol.15 , pp. 532-536
    • Chomczynski, P.1
  • 3
    • 77951498518 scopus 로고    scopus 로고
    • AMD biofilms: Using model communities to study microbial evolution and ecological complexity in nature
    • Denef VJ, Mueller RS, Banfield JF. (2010). AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature. ISME J 4: 599-610.
    • (2010) ISME J , vol.4 , pp. 599-610
    • Denef, V.J.1    Mueller, R.S.2    Banfield, J.F.3
  • 4
    • 79959913950 scopus 로고    scopus 로고
    • Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry
    • Dunn WB, Broadhurst D, Begley P, Zelena E, Francis-McIntyre S, Anderson N et al. (2011). Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry. Nat Protoc 6: 1060-1083.
    • (2011) Nat Protoc , vol.6 , pp. 1060-1083
    • Dunn, W.B.1    Broadhurst, D.2    Begley, P.3    Zelena, E.4    Francis-Mcintyre, S.5    Anderson, N.6
  • 6
    • 33644975004 scopus 로고    scopus 로고
    • RNA integrity and the effect on the real-time qRT-PCR performance
    • Fleige S, Pfaffl MW. (2006). RNA integrity and the effect on the real-time qRT-PCR performance. Mol Aspects Med 27: 126-139.
    • (2006) Mol Aspects Med , vol.27 , pp. 126-139
    • Fleige, S.1    Pfaffl, M.W.2
  • 7
    • 33750699996 scopus 로고    scopus 로고
    • Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors
    • Florens L, Carozza MJ, Swanson SK, Fournier M, Coleman MK, Workman JL et al. (2006). Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors. Methods 40: 303-311.
    • (2006) Methods , vol.40 , pp. 303-311
    • Florens, L.1    Carozza, M.J.2    Swanson, S.K.3    Fournier, M.4    Coleman, M.K.5    Workman, J.L.6
  • 9
    • 77957689489 scopus 로고    scopus 로고
    • Validation of two ribosomal RNA removal methods for microbial metatranscriptomics
    • He S, Wurtzel O, Singh K, Froula JL, Yilmaz S, Tringe SG et al. (2010). Validation of two ribosomal RNA removal methods for microbial metatranscriptomics. Nat Meth 7: 807-812.
    • (2010) Nat Meth , vol.7 , pp. 807-812
    • He, S.1    Wurtzel, O.2    Singh, K.3    Froula, J.L.4    Yilmaz, S.5    Tringe, S.G.6
  • 10
    • 34447523607 scopus 로고    scopus 로고
    • Isolation and solubilization of proteins after TRIzol extraction of RNA and DNA from patient material following prolonged storage
    • Hummon AB, Lim SR, Difilippantonio MJ, Ried T. (2007). Isolation and solubilization of proteins after TRIzol extraction of RNA and DNA from patient material following prolonged storage. Biotechniques 42: 467-472.
    • (2007) Biotechniques , vol.42 , pp. 467-472
    • Hummon, A.B.1    Lim, S.R.2    Difilippantonio, M.J.3    Ried, T.4
  • 11
    • 50649110928 scopus 로고    scopus 로고
    • Evaluation of isolation methods and RNA integrity for bacterial RNA quantitation
    • Jahn CE, Charkowski AO, Willis DK. (2008). Evaluation of isolation methods and RNA integrity for bacterial RNA quantitation. J Microbiol Methods 75: 318-324.
    • (2008) J Microbiol Methods , vol.75 , pp. 318-324
    • Jahn, C.E.1    Charkowski, A.O.2    Willis, D.K.3
  • 13
    • 0004243729 scopus 로고    scopus 로고
    • The MIT Press Cambridge, Massachusetts, London, England
    • Kitano H. (2001). Foundations of Systems Biology. The MIT Press: Cambridge, Massachusetts, London, England.
    • (2001) Foundations of Systems Biology
    • Kitano, H.1
  • 14
    • 33746776930 scopus 로고    scopus 로고
    • Phylogeny, physiology and distribution of'Candidatus Microthrix calida' a new Microthrix species isolated from industrial activated sludge wastewater treatment plants
    • Levantesi C, Rossetti S, Thelen K, Kragelund C, Krooneman J, Eikelboom D et al. (2006). Phylogeny, physiology and distribution of 'Candidatus Microthrix calida', a new Microthrix species isolated from industrial activated sludge wastewater treatment plants. Environ Microbiol 8: 1552-1563.
    • (2006) Environ Microbiol , vol.8 , pp. 1552-1563
    • Levantesi, C.1    Rossetti, S.2    Thelen, K.3    Kragelund, C.4    Krooneman, J.5    Eikelboom, D.6
  • 16
    • 0024521543 scopus 로고
    • A concordance correlation coefficient to evaluate reproducibility
    • Lin LI. (1989). A concordance correlation coefficient to evaluate reproducibility. Biometrics 45: 255-268.
    • (1989) Biometrics , vol.45 , pp. 255-268
    • Lin, L.I.1
  • 17
    • 0028990826 scopus 로고
    • Value of A260/A280 ratios for measurement of purity of nucleic acids
    • Manchester KL. (1995). Value of A260/A280 ratios for measurement of purity of nucleic acids. Biotechniques 19: 208-210.
    • (1995) Biotechniques , vol.19 , pp. 208-210
    • Manchester, K.L.1
  • 18
    • 33644965802 scopus 로고    scopus 로고
    • Concurrent mRNA and protein extraction from the same experimental sample using a commercially available column-based RNA preparation kit
    • Morse S, Shaw G, Larner S. (2006). Concurrent mRNA and protein extraction from the same experimental sample using a commercially available column-based RNA preparation kit. Biotechniques 40: 54-58.
    • (2006) Biotechniques , vol.40 , pp. 54-58
    • Morse, S.1    Shaw, G.2    Larner, S.3
  • 19
    • 70449377846 scopus 로고    scopus 로고
    • Simultaneous isolation of DNA, RNA, and proteins for genetic, epigenetic, transcriptomic, and proteomic analysis
    • Radpour R, Sikora M, Grussenmeyer T, Kohler C, Barekati Z, Holzgreve W et al. (2009). Simultaneous isolation of DNA, RNA, and proteins for genetic, epigenetic, transcriptomic, and proteomic analysis. J Proteome Res 8: 5264-5274.
    • (2009) J Proteome Res , vol.8 , pp. 5264-5274
    • Radpour, R.1    Sikora, M.2    Grussenmeyer, T.3    Kohler, C.4    Barekati, Z.5    Holzgreve, W.6
  • 20
    • 49649089054 scopus 로고    scopus 로고
    • Molecular eco-systems biology: Towards an understanding of community function
    • Raes J, Bork P. (2008). Molecular eco-systems biology: towards an understanding of community function. Nat Rev Micro 6: 693-699.
    • (2008) Nat Rev Micro , vol.6 , pp. 693-699
    • Raes, J.1    Bork, P.2
  • 22
    • 37349091160 scopus 로고    scopus 로고
    • Column-based method to simultaneously extract DNA, RNA, and proteins from the same sample
    • Tolosa JM, Schjenken1 JE, Civiti TD, Clifton VL, Smith R. (2007). Column-based method to simultaneously extract DNA, RNA, and proteins from the same sample. Biotechniques 43: 799-804.
    • (2007) Biotechniques , vol.43 , pp. 799-804
    • Tolosa, J.M.1    Schjenken, J.E.2    Civiti, T.D.3    Clifton, V.L.4    Smith, R.5
  • 23
    • 1542377296 scopus 로고    scopus 로고
    • Community structure and metabolism through reconstruction of microbial genomes from the environment
    • Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM et al. (2004). Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428: 37-43.
    • (2004) Nature , vol.428 , pp. 37-43
    • Tyson, G.W.1    Chapman, J.2    Hugenholtz, P.3    Allen, E.E.4    Ram, R.J.5    Richardson, P.M.6
  • 25
    • 0942265392 scopus 로고    scopus 로고
    • Process for the integrated extraction, identification and quantification of metabolites, proteins and RNA to reveal their co-regulation in biochemical networks
    • Weckwerth W, Wenzel K, Fiehn O. (2004). Process for the integrated extraction, identification and quantification of metabolites, proteins and RNA to reveal their co-regulation in biochemical networks. Proteomics 4: 78-83.
    • (2004) Proteomics , vol.4 , pp. 78-83
    • Weckwerth, W.1    Wenzel, K.2    Fiehn, O.3
  • 26
    • 4344646435 scopus 로고    scopus 로고
    • The application of two-dimensional polyacrylamide gel electrophoresis and downstream analyses to a mixed community of prokaryotic microorganisms
    • Wilmes P, Bond PL. (2004). The application of two-dimensional polyacrylamide gel electrophoresis and downstream analyses to a mixed community of prokaryotic microorganisms. Environ Microbiol 6: 911-920.
    • (2004) Environ Microbiol , vol.6 , pp. 911-920
    • Wilmes, P.1    Bond, P.L.2
  • 29
    • 78751633314 scopus 로고    scopus 로고
    • Simultaneous isolation of DNA, RNA, and protein from Medicago truncatula L
    • Xiong J, Yang Q, Kang J, Sun Y, Zhang T, Margaret G et al. (2011). Simultaneous isolation of DNA, RNA, and protein from Medicago truncatula L. Electrophoresis 32: 321-330.
    • (2011) Electrophoresis , vol.32 , pp. 321-330
    • Xiong, J.1    Yang, Q.2    Kang, J.3    Sun, Y.4    Zhang, T.5    Margaret, G.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.