메뉴 건너뛰기




Volumn 6, Issue 8, 2015, Pages 1447-1453

Insights into laccase engineering from molecular simulations: Toward a binding-focused strategy

Author keywords

copper oxidoreductases; directed evolution; in silico enzyme engineering; PELE; substrate binding; substrate oxidation

Indexed keywords

BINDING ENERGY; COPPER; ENZYME ACTIVITY; OXIDATION; REDOX REACTIONS; SUBSTRATES;

EID: 84927918112     PISSN: None     EISSN: 19487185     Source Type: Journal    
DOI: 10.1021/acs.jpclett.5b00225     Document Type: Article
Times cited : (54)

References (62)
  • 1
    • 77949860707 scopus 로고    scopus 로고
    • Designing Artificial Enzymes by Intuition and Computation
    • Nanda, V.; Koder, R. L. Designing Artificial Enzymes by Intuition and Computation Nat. Chem. 2010, 2, 15-24
    • (2010) Nat. Chem. , vol.2 , pp. 15-24
    • Nanda, V.1    Koder, R.L.2
  • 2
    • 65249177164 scopus 로고    scopus 로고
    • Directed Enzyme Evolution: Climbing Fitness Peaks One Amino Acid at a Time
    • Tracewell, C. A.; Arnold, F. H. Directed Enzyme Evolution: Climbing Fitness Peaks One Amino Acid at a Time Curr. Opin. Chem. Biol. 2009, 13, 3-9
    • (2009) Curr. Opin. Chem. Biol. , vol.13 , pp. 3-9
    • Tracewell, C.A.1    Arnold, F.H.2
  • 6
    • 33646154205 scopus 로고    scopus 로고
    • Laccases: Blue Enzymes for Green Chemistry
    • Riva, S. Laccases: Blue Enzymes for Green Chemistry Trends Biotechnol. 2006, 24, 219-226
    • (2006) Trends Biotechnol. , vol.24 , pp. 219-226
    • Riva, S.1
  • 7
    • 52949143475 scopus 로고    scopus 로고
    • Direct Electron Transfer from Graphite and Functionalized Gold Electrodes to T1 and T2/T3 Copper Centers of Bilirubin Oxidase
    • Ramírez, P.; Mano, N.; Andreu, R.; Ruzgas, T.; Heller, A.; Gorton, L.; Shleev, S. Direct Electron Transfer from Graphite and Functionalized Gold Electrodes to T1 and T2/T3 Copper Centers of Bilirubin Oxidase Biochim. Biophys. Acta, Bioenerg. 2008, 1777, 1364-1369
    • (2008) Biochim. Biophys. Acta, Bioenerg. , vol.1777 , pp. 1364-1369
    • Ramírez, P.1    Mano, N.2    Andreu, R.3    Ruzgas, T.4    Heller, A.5    Gorton, L.6    Shleev, S.7
  • 8
    • 0029937108 scopus 로고    scopus 로고
    • Oxidation of Phenols, Anilines, and Benzenethiols by Fungal Laccases: Correlation between Activity and Redox Potentials as Well as Halide Inhibition†
    • Xu, F. Oxidation of Phenols, Anilines, and Benzenethiols by Fungal Laccases: Correlation between Activity and Redox Potentials as Well as Halide Inhibition† Biochemistry (Moscow) 1996, 35, 7608-7614
    • (1996) Biochemistry (Moscow) , vol.35 , pp. 7608-7614
    • Xu, F.1
  • 10
    • 43249105591 scopus 로고    scopus 로고
    • An Assessment of the Relative Contributions of Redox and Steric Issues to Laccase Specificity towards Putative Substrates
    • Tadesse, M. A.; D'Annibale, A.; Galli, C.; Gentili, P.; Sergi, F. An Assessment of the Relative Contributions of Redox and Steric Issues to Laccase Specificity towards Putative Substrates Org. Biomol. Chem. 2008, 6, 868-878
    • (2008) Org. Biomol. Chem. , vol.6 , pp. 868-878
    • Tadesse, M.A.1    D'Annibale, A.2    Galli, C.3    Gentili, P.4    Sergi, F.5
  • 11
    • 84890121231 scopus 로고    scopus 로고
    • Concerted Electron/Proton Transfer Mechanism in the Oxidation of Phenols by Laccase
    • Galli, C.; Madzak, C.; Vadalà, R.; Jolivalt, C.; Gentili, P. Concerted Electron/Proton Transfer Mechanism in the Oxidation of Phenols by Laccase ChemBioChem. 2013, 14, 2500-2505
    • (2013) ChemBioChem. , vol.14 , pp. 2500-2505
    • Galli, C.1    Madzak, C.2    Vadalaì, R.3    Jolivalt, C.4    Gentili, P.5
  • 12
    • 21144473420 scopus 로고
    • Electron Transfer Reactions in Chemistry. Theory and Experiment
    • Marcus, R. A. Electron Transfer Reactions in Chemistry. Theory and Experiment Rev. Mod. Phys. 1993, 65, 599-610
    • (1993) Rev. Mod. Phys. , vol.65 , pp. 599-610
    • Marcus, R.A.1
  • 13
    • 79953842858 scopus 로고    scopus 로고
    • Design Parameters for Tuning the Type 1 Cu Multicopper Oxidase Redox Potential: Insight from a Combination of First Principles and Empirical Molecular Dynamics Simulations
    • Hong, G.; Ivnitski, D. M.; Johnson, G. R.; Atanassov, P.; Pachter, R. Design Parameters for Tuning the Type 1 Cu Multicopper Oxidase Redox Potential: Insight from a Combination of First Principles and Empirical Molecular Dynamics Simulations J. Am. Chem. Soc. 2011, 133, 4802-4809
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 4802-4809
    • Hong, G.1    Ivnitski, D.M.2    Johnson, G.R.3    Atanassov, P.4    Pachter, R.5
  • 14
    • 3042694367 scopus 로고    scopus 로고
    • Determinants of the Relative Reduction Potentials of Type-1 Copper Sites in Proteins
    • Li, H.; Webb, S. P.; Ivanic, J.; Jensen, J. H. Determinants of the Relative Reduction Potentials of Type-1 Copper Sites in Proteins J. Am. Chem. Soc. 2004, 126, 8010-8019
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 8010-8019
    • Li, H.1    Webb, S.P.2    Ivanic, J.3    Jensen, J.H.4
  • 15
    • 0037473550 scopus 로고    scopus 로고
    • Frozen Density Functional Free Energy Simulations of Redox Proteins: Computational Studies of the Reduction Potential of Plastocyanin and Rusticyanin
    • Olsson, M. H. M.; Hong, G.; Warshel, A. Frozen Density Functional Free Energy Simulations of Redox Proteins: Computational Studies of the Reduction Potential of Plastocyanin and Rusticyanin J. Am. Chem. Soc. 2003, 125, 5025-5039
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 5025-5039
    • Olsson, M.H.M.1    Hong, G.2    Warshel, A.3
  • 16
    • 0030025889 scopus 로고    scopus 로고
    • A Study of a Series of Recombinant Fungal Laccases and Bilirubin Oxidase That Exhibit Significant Differences in Redox Potential, Substrate Specificity, and Stability
    • Xu, F.; Shin, W.; Brown, S. H.; Wahleithner, J. A.; Sundaram, U. M.; Solomon, E. I. A Study of a Series of Recombinant Fungal Laccases and Bilirubin Oxidase That Exhibit Significant Differences in Redox Potential, Substrate Specificity, and Stability Biochim. Biophys. Acta, Protein Struct. Mol. Enzymol. 1996, 1292, 303-311
    • (1996) Biochim. Biophys. Acta, Protein Struct. Mol. Enzymol. , vol.1292 , pp. 303-311
    • Xu, F.1    Shin, W.2    Brown, S.H.3    Wahleithner, J.A.4    Sundaram, U.M.5    Solomon, E.I.6
  • 19
    • 33745747078 scopus 로고    scopus 로고
    • Perturbations of the T1 Copper Site in the CotA Laccase from Bacillus Subtilis: Structural, Biochemical, Enzymatic and Stability Studies
    • Durão, P.; Bento, I.; Fernandes, A. T.; Melo, E. P.; Lindley, P. F.; Martins, L. O. Perturbations of the T1 Copper Site in the CotA Laccase from Bacillus Subtilis: Structural, Biochemical, Enzymatic and Stability Studies JBIC, J. Biol. Inorg. Chem. 2006, 11, 514-526
    • (2006) JBIC, J. Biol. Inorg. Chem. , vol.11 , pp. 514-526
    • Durão, P.1    Bento, I.2    Fernandes, A.T.3    Melo, E.P.4    Lindley, P.F.5    Martins, L.O.6
  • 20
    • 79959212575 scopus 로고    scopus 로고
    • How Is the Reactivity of Laccase Affected by Single-Point Mutations? Engineering Laccase for Improved Activity towards Sterically Demanding Substrates
    • Galli, C.; Gentili, P.; Jolivalt, C.; Madzak, C.; Vadalà, R. How Is the Reactivity of Laccase Affected by Single-Point Mutations? Engineering Laccase for Improved Activity towards Sterically Demanding Substrates Appl. Microbiol. Biotechnol. 2011, 91, 123-131
    • (2011) Appl. Microbiol. Biotechnol. , vol.91 , pp. 123-131
    • Galli, C.1    Gentili, P.2    Jolivalt, C.3    Madzak, C.4    Vadalaì, R.5
  • 22
    • 50249212855 scopus 로고
    • Über Die Zuordnung von Wellenfunktionen Und Eigenwerten Zu Den Einzelnen Elektronen Eines Atoms
    • Koopmans, T. Über Die Zuordnung von Wellenfunktionen Und Eigenwerten Zu Den Einzelnen Elektronen Eines Atoms Physica 1934, 1, 104-113
    • (1934) Physica , vol.1 , pp. 104-113
    • Koopmans, T.1
  • 23
    • 79960716800 scopus 로고    scopus 로고
    • The Reorganization Energy in Cytochrome c Is Controlled by the Accessibility of the Heme to the Solvent
    • Bortolotti, C. A.; Siwko, M. E.; Castellini, E.; Ranieri, A.; Sola, M.; Corni, S. The Reorganization Energy in Cytochrome c Is Controlled by the Accessibility of the Heme to the Solvent J. Phys. Chem. Lett. 2011, 2, 1761-1765
    • (2011) J. Phys. Chem. Lett. , vol.2 , pp. 1761-1765
    • Bortolotti, C.A.1    Siwko, M.E.2    Castellini, E.3    Ranieri, A.4    Sola, M.5    Corni, S.6
  • 24
    • 84893727993 scopus 로고    scopus 로고
    • Electron Flow through Metalloproteins
    • Winkler, J. R.; Gray, H. B. Electron Flow through Metalloproteins Chem. Rev. 2013, 114 (7) 3369-3380
    • (2013) Chem. Rev. , vol.114 , Issue.7 , pp. 3369-3380
    • Winkler, J.R.1    Gray, H.B.2
  • 26
    • 84949114843 scopus 로고    scopus 로고
    • Laccase Engineering by Rational and Evolutionary Design
    • Pardo, I.; Camarero, S. Laccase Engineering by Rational and Evolutionary Design Cell. Mol. Life Sci. 2015, 1-14
    • (2015) Cell. Mol. Life Sci. , pp. 1-14
    • Pardo, I.1    Camarero, S.2
  • 27
    • 34147107263 scopus 로고    scopus 로고
    • PELE: Protein Energy Landscape Exploration. A Novel Monte Carlo Based Technique
    • Borrelli, K. W.; Vitalis, A.; Alcantara, R.; Guallar, V. PELE: Protein Energy Landscape Exploration. A Novel Monte Carlo Based Technique J. Chem. Theory Comput. 2005, 1, 1304-1311
    • (2005) J. Chem. Theory Comput. , vol.1 , pp. 1304-1311
    • Borrelli, K.W.1    Vitalis, A.2    Alcantara, R.3    Guallar, V.4
  • 28
    • 84858325807 scopus 로고    scopus 로고
    • Exploration of Protein Conformational Change with PELE and Meta-Dynamics
    • Cossins, B. P.; Hosseini, A.; Guallar, V. Exploration of Protein Conformational Change with PELE and Meta-Dynamics J. Chem. Theory Comput. 2012, 8, 959-965
    • (2012) J. Chem. Theory Comput. , vol.8 , pp. 959-965
    • Cossins, B.P.1    Hosseini, A.2    Guallar, V.3
  • 29
    • 84892621445 scopus 로고    scopus 로고
    • Monte Carlo Free Ligand Diffusion with Markov State Model Analysis and Absolute Binding Free Energy Calculations
    • Takahashi, R.; Gil, V. A.; Guallar, V. Monte Carlo Free Ligand Diffusion with Markov State Model Analysis and Absolute Binding Free Energy Calculations J. Chem. Theory Comput. 2014, 10, 282-288
    • (2014) J. Chem. Theory Comput. , vol.10 , pp. 282-288
    • Takahashi, R.1    Gil, V.A.2    Guallar, V.3
  • 30
    • 60349127442 scopus 로고    scopus 로고
    • QM/MM Methods for Biomolecular Systems
    • Senn, H. M.; Thiel, W. QM/MM Methods for Biomolecular Systems Angew. Chem., Int. Ed. 2009, 48, 1198-1229
    • (2009) Angew. Chem., Int. Ed. , vol.48 , pp. 1198-1229
    • Senn, H.M.1    Thiel, W.2
  • 32
    • 20744450524 scopus 로고    scopus 로고
    • Computational Approaches to the Determination of Active Site Structures and Reaction Mechanisms in Heterogeneous Catalysts
    • Catlow, C. R. A.; French, S. A.; Sokol, A. A.; Thomas, J. M. Computational Approaches to the Determination of Active Site Structures and Reaction Mechanisms in Heterogeneous Catalysts Philos. Trans. R. Soc., A 2005, 363, 913-936
    • (2005) Philos. Trans. R. Soc., A , vol.363 , pp. 913-936
    • Catlow, C.R.A.1    French, S.A.2    Sokol, A.A.3    Thomas, J.M.4
  • 33
    • 58749105158 scopus 로고    scopus 로고
    • Mapping Protein Electron Transfer Pathways with QM/MM Methods
    • Guallar, V.; Wallrapp, F. Mapping Protein Electron Transfer Pathways with QM/MM Methods J. R. Soc. Interface 2008, 5, S233-S239
    • (2008) J. R. Soc. Interface , vol.5 , pp. S233-S239
    • Guallar, V.1    Wallrapp, F.2
  • 34
    • 55749088365 scopus 로고    scopus 로고
    • Heme Electron Transfer in Peroxidases: The Propionate E-Pathway
    • Guallar, V. Heme Electron Transfer in Peroxidases: The Propionate E-Pathway J. Phys. Chem. B 2008, 112, 13460-13464
    • (2008) J. Phys. Chem. B , vol.112 , pp. 13460-13464
    • Guallar, V.1
  • 35
    • 0031458001 scopus 로고    scopus 로고
    • Relationship between the Oxidation Potential and Electron Spin Density of the Primary Electron Donor in Reaction Centers from Rhodobacter Sphaeroides
    • Artz, K.; Williams, J. C.; Allen, J. P.; Lendzian, F.; Rautter, J.; Lubitz, W. Relationship between the Oxidation Potential and Electron Spin Density of the Primary Electron Donor in Reaction Centers from Rhodobacter Sphaeroides Proc. Natl. Acad. Sci. U. S. A. 1997, 94, 13582-13587
    • (1997) Proc. Natl. Acad. Sci. U. S. A. , vol.94 , pp. 13582-13587
    • Artz, K.1    Williams, J.C.2    Allen, J.P.3    Lendzian, F.4    Rautter, J.5    Lubitz, W.6
  • 36
    • 0001225885 scopus 로고
    • One-Electron Redox Potentials of Nitro Compounds and Radiosensitizers. Correlation with Spin Densities of Their Radical Anions
    • Meisel, D.; Neta, P. One-Electron Redox Potentials of Nitro Compounds and Radiosensitizers. Correlation with Spin Densities of Their Radical Anions J. Am. Chem. Soc. 1975, 97, 5198-5203
    • (1975) J. Am. Chem. Soc. , vol.97 , pp. 5198-5203
    • Meisel, D.1    Neta, P.2
  • 37
    • 84891518118 scopus 로고    scopus 로고
    • Setting the Stage for Electron Transfer: Molecular Basis of ABTS-Binding to Four Laccases from Trametes Versicolor at Variable pH and Protein Oxidation State
    • Christensen, N. J.; Kepp, K. P. Setting the Stage for Electron Transfer: Molecular Basis of ABTS-Binding to Four Laccases from Trametes Versicolor at Variable pH and Protein Oxidation State J. Mol. Catal. B: Enzym. 2014, 100, 68-77
    • (2014) J. Mol. Catal. B: Enzym. , vol.100 , pp. 68-77
    • Christensen, N.J.1    Kepp, K.P.2
  • 38
    • 84875978674 scopus 로고    scopus 로고
    • In-Silico Assessment of Protein-Protein Electron Transfer. A Case Study: Cytochrome c Peroxidase - Cytochrome c
    • Wallrapp, F. H.; Voityuk, A. A.; Guallar, V. In-Silico Assessment of Protein-Protein Electron Transfer. A Case Study: Cytochrome c Peroxidase-Cytochrome c PLoS Comput. Biol. 2013, 9, e1002990
    • (2013) PLoS Comput. Biol. , vol.9
    • Wallrapp, F.H.1    Voityuk, A.A.2    Guallar, V.3
  • 39
    • 52449088531 scopus 로고    scopus 로고
    • Free Energies for Biological Electron Transfer from QM/MM Calculation: Method, Application and Critical Assessment
    • Blumberger, J. Free Energies for Biological Electron Transfer from QM/MM Calculation: Method, Application and Critical Assessment Phys. Chem. Chem. Phys. 2008, 10, 5651-5667
    • (2008) Phys. Chem. Chem. Phys. , vol.10 , pp. 5651-5667
    • Blumberger, J.1
  • 40
    • 80855128956 scopus 로고    scopus 로고
    • Reorganization Energy for Internal Electron Transfer in Multicopper Oxidases
    • Hu, L.; Farrokhnia, M.; Heimdal, J.; Shleev, S.; Rulíšek, L.; Ryde, U. Reorganization Energy for Internal Electron Transfer in Multicopper Oxidases J. Phys. Chem. B 2011, 115, 13111-13126
    • (2011) J. Phys. Chem. B , vol.115 , pp. 13111-13126
    • Hu, L.1    Farrokhnia, M.2    Heimdal, J.3    Shleev, S.4    Rulíšek, L.5    Ryde, U.6
  • 41
    • 0037159077 scopus 로고    scopus 로고
    • Fragment Charge Difference Method for Estimating Donor-acceptor Electronic Coupling: Application to DNA Π-Stacks
    • Voityuk, A. A.; Rösch, N. Fragment Charge Difference Method for Estimating Donor-acceptor Electronic Coupling: Application to DNA Π-Stacks J. Chem. Phys. 2002, 117, 5607-5616
    • (2002) J. Chem. Phys. , vol.117 , pp. 5607-5616
    • Voityuk, A.A.1    Rösch, N.2
  • 42
    • 49549095554 scopus 로고    scopus 로고
    • Crystal Structure of the Blue Multicopper Oxidase from the White-Rot Fungus Trametes Trogii Complexed with P-Toluate
    • Matera, I.; Gullotto, A.; Tilli, S.; Ferraroni, M.; Scozzafava, A.; Briganti, F. Crystal Structure of the Blue Multicopper Oxidase from the White-Rot Fungus Trametes Trogii Complexed with P-Toluate Inorg. Chim. Acta 2008, 361, 4129-4137
    • (2008) Inorg. Chim. Acta , vol.361 , pp. 4129-4137
    • Matera, I.1    Gullotto, A.2    Tilli, S.3    Ferraroni, M.4    Scozzafava, A.5    Briganti, F.6
  • 45
    • 1642310340 scopus 로고    scopus 로고
    • Glide: A New Approach for Rapid, Accurate Docking and Scoring. 2. Enrichment Factors in Database Screening
    • Halgren, T. A.; Murphy, R. B.; Friesner, R. A.; Beard, H. S.; Frye, L. L.; Pollard, W. T.; Banks, J. L. Glide: A New Approach for Rapid, Accurate Docking and Scoring. 2. Enrichment Factors in Database Screening J. Med. Chem. 2004, 47, 1750-1759
    • (2004) J. Med. Chem. , vol.47 , pp. 1750-1759
    • Halgren, T.A.1    Murphy, R.B.2    Friesner, R.A.3    Beard, H.S.4    Frye, L.L.5    Pollard, W.T.6    Banks, J.L.7
  • 46
    • 84880529288 scopus 로고    scopus 로고
    • Protein and Ligand Preparation: Parameters, Protocols, and Influence on Virtual Screening Enrichments
    • Sastry, G. M.; Adzhigirey, M.; Day, T.; Annabhimoju, R.; Sherman, W. Protein and Ligand Preparation: Parameters, Protocols, and Influence on Virtual Screening Enrichments J. Comput.-Aided Mol. Des. 2013, 27, 221-234
    • (2013) J. Comput.-Aided Mol. Des. , vol.27 , pp. 221-234
    • Sastry, G.M.1    Adzhigirey, M.2    Day, T.3    Annabhimoju, R.4    Sherman, W.5
  • 47
    • 79951476387 scopus 로고    scopus 로고
    • PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical pKa Predictions
    • Olsson, M. H. M.; Søndergaard, C. R.; Rostkowski, M.; Jensen, J. H. PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical pKa Predictions J. Chem. Theory Comput. 2011, 7, 525-537
    • (2011) J. Chem. Theory Comput. , vol.7 , pp. 525-537
    • Olsson, M.H.M.1    Søndergaard, C.R.2    Rostkowski, M.3    Jensen, J.H.4
  • 48
    • 84864473993 scopus 로고    scopus 로고
    • H++ 3.0: Automating pK Prediction and the Preparation of Biomolecular Structures for Atomistic Molecular Modeling and Simulations
    • Anandakrishnan, R.; Aguilar, B.; Onufriev, A. V. H++ 3.0: Automating pK Prediction and the Preparation of Biomolecular Structures for Atomistic Molecular Modeling and Simulations Nucleic Acids Res. 2012, 40, W537-W541
    • (2012) Nucleic Acids Res. , vol.40 , pp. W537-W541
    • Anandakrishnan, R.1    Aguilar, B.2    Onufriev, A.V.3
  • 51
    • 0035913529 scopus 로고    scopus 로고
    • Evaluation and Reparametrization of the OPLS-AA Force Field for Proteins via Comparison with Accurate Quantum Chemical Calculations on Peptides
    • Kaminski, G. A.; Friesner, R. A.; Tirado-Rives, J.; Jorgensen, W. L. Evaluation and Reparametrization of the OPLS-AA Force Field for Proteins via Comparison with Accurate Quantum Chemical Calculations on Peptides J. Phys. Chem. B 2001, 105, 6474-6487
    • (2001) J. Phys. Chem. B , vol.105 , pp. 6474-6487
    • Kaminski, G.A.1    Friesner, R.A.2    Tirado-Rives, J.3    Jorgensen, W.L.4
  • 52
    • 0033654297 scopus 로고    scopus 로고
    • Generalized Born Models of Macromolecular Solvation Effects
    • Bashford, D.; Case, D. A. Generalized Born Models of Macromolecular Solvation Effects Annu. Rev. Phys. Chem. 2000, 51, 129-152
    • (2000) Annu. Rev. Phys. Chem. , vol.51 , pp. 129-152
    • Bashford, D.1    Case, D.A.2
  • 53
    • 0001664118 scopus 로고    scopus 로고
    • A Mixed Quantum Mechanics/molecular Mechanics (QM/MM) Method for Large-Scale Modeling of Chemistry in Protein Environments
    • Murphy, R. B.; Philipp, D. M.; Friesner, R. A. A Mixed Quantum Mechanics/molecular Mechanics (QM/MM) Method for Large-Scale Modeling of Chemistry in Protein Environments J. Comput. Chem. 2000, 21, 1442-1457
    • (2000) J. Comput. Chem. , vol.21 , pp. 1442-1457
    • Murphy, R.B.1    Philipp, D.M.2    Friesner, R.A.3
  • 54
    • 11644266970 scopus 로고
    • Electronic Population Analysis on LCAO-MO Molecular Wave Functions. I
    • Mulliken, R. S. Electronic Population Analysis on LCAO-MO Molecular Wave Functions. I J. Chem. Phys. 1955, 23, 1833-1840
    • (1955) J. Chem. Phys. , vol.23 , pp. 1833-1840
    • Mulliken, R.S.1
  • 55
    • 43049141516 scopus 로고    scopus 로고
    • The M06 Suite of Density Functionals for Main Group Thermochemistry, Thermochemical Kinetics, Noncovalent Interactions, Excited States, and Transition Elements: Two New Functionals and Systematic Testing of Four M06-Class Functionals and 12 Other Functionals
    • Zhao, Y.; Truhlar, D. G. The M06 Suite of Density Functionals for Main Group Thermochemistry, Thermochemical Kinetics, Noncovalent Interactions, Excited States, and Transition Elements: Two New Functionals and Systematic Testing of Four M06-Class Functionals and 12 Other Functionals Theor. Chem. Acc. 2008, 120, 215-241
    • (2008) Theor. Chem. Acc. , vol.120 , pp. 215-241
    • Zhao, Y.1    Truhlar, D.G.2
  • 56
    • 33745770836 scopus 로고
    • Ab Initio Effective Core Potentials for Molecular Calculations. Potentials for the Transition Metal Atoms Sc to Hg
    • Hay, P. J.; Wadt, W. R. Ab Initio Effective Core Potentials for Molecular Calculations. Potentials for the Transition Metal Atoms Sc to Hg J. Chem. Phys. 1985, 82, 270-283
    • (1985) J. Chem. Phys. , vol.82 , pp. 270-283
    • Hay, P.J.1    Wadt, W.R.2
  • 57
    • 0347170005 scopus 로고
    • Self - Consistent Molecular Orbital Methods. XII. Further Extensions of Gaussian - Type Basis Sets for Use in Molecular Orbital Studies of Organic Molecules
    • Hehre, W. J.; Ditchfield, R.; Pople, J. A. Self-Consistent Molecular Orbital Methods. XII. Further Extensions of Gaussian-Type Basis Sets for Use in Molecular Orbital Studies of Organic Molecules J. Chem. Phys. 1972, 56, 2257-2261
    • (1972) J. Chem. Phys. , vol.56 , pp. 2257-2261
    • Hehre, W.J.1    Ditchfield, R.2    Pople, J.A.3
  • 59
    • 34547809547 scopus 로고
    • A Unified Formulation of the Constant Temperature Molecular Dynamics Methods
    • Nosé, S. A Unified Formulation of the Constant Temperature Molecular Dynamics Methods J. Chem. Phys. 1984, 81, 511-519
    • (1984) J. Chem. Phys. , vol.81 , pp. 511-519
    • Nosé, S.1
  • 60
    • 36449003554 scopus 로고
    • Constant Pressure Molecular Dynamics Algorithms
    • Martyna, G. J.; Tobias, D. J.; Klein, M. L. Constant Pressure Molecular Dynamics Algorithms J. Chem. Phys. 1994, 101, 4177-4189
    • (1994) J. Chem. Phys. , vol.101 , pp. 4177-4189
    • Martyna, G.J.1    Tobias, D.J.2    Klein, M.L.3
  • 61
    • 33646650705 scopus 로고
    • Reversible Multiple Time Scale Molecular Dynamics
    • Tuckerman, M.; Berne, B. J.; Martyna, G. J. Reversible Multiple Time Scale Molecular Dynamics J. Chem. Phys. 1992, 97, 1990-2001
    • (1992) J. Chem. Phys. , vol.97 , pp. 1990-2001
    • Tuckerman, M.1    Berne, B.J.2    Martyna, G.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.