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Volumn 9, Issue 1, 2015, Pages 101-114

Life on the edge: Functional genomic response of Ignicoccus hospitalis to the presence of Nanoarchaeum equitans

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA; CRENARCHAEOTA; IGNICOCCUS; NANOARCHAEUM EQUITANS;

EID: 84927693506     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2014.112     Document Type: Article
Times cited : (35)

References (42)
  • 2
    • 33845713959 scopus 로고    scopus 로고
    • The dominating outer membrane protein of the hyperthermophilic Archaeum Ignicoccus hospitalis: A novel pore-forming complex
    • Burghardt T, Näther DJ, Junglas B, Huber H, Rachel R. (2007). The dominating outer membrane protein of the hyperthermophilic Archaeum Ignicoccus hospitalis: a novel pore-forming complex. Mol Microbiol 63: 166-176.
    • (2007) Mol Microbiol , vol.63 , pp. 166-176
    • Burghardt, T.1    Näther, D.J.2    Junglas, B.3    Huber, H.4    Rachel, R.5
  • 3
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R, Domrachev M, Lash AE. (2002). Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-210.
    • (2002) Nucleic Acids Res , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 4
    • 79961169429 scopus 로고    scopus 로고
    • Microbial community structure of hydrothermal deposits from geochemically different vent fields along the Mid-Atlantic Ridge
    • Flores GE, Campbell JH, Kirshtein JD, Meneghin J, Podar M, Steinberg JI et al. (2011). Microbial community structure of hydrothermal deposits from geochemically different vent fields along the Mid-Atlantic Ridge. Environ Microbiol 13: 2158-2171.
    • (2011) Environ Microbiol , vol.13 , pp. 2158-2171
    • Flores, G.E.1    Campbell, J.H.2    Kirshtein, J.D.3    Meneghin, J.4    Podar, M.5    Steinberg, J.I.6
  • 5
    • 84862804279 scopus 로고    scopus 로고
    • Inter-field variability in the microbial communities of hydrothermal vent deposits from a back-arc basin
    • Flores GE, Shakya M, Meneghin J, Yang ZK, Seewald JS, Geoff Wheat C et al. (2012). Inter-field variability in the microbial communities of hydrothermal vent deposits from a back-arc basin. Geobiology 10: 333-346.
    • (2012) Geobiology , vol.10 , pp. 333-346
    • Flores, G.E.1    Shakya, M.2    Meneghin, J.3    Yang, Z.K.4    Seewald, J.S.5    Geoff Wheat, C.6
  • 6
    • 79961096901 scopus 로고    scopus 로고
    • Proteomic characterization of cellular and molecular processes that enable the Nanoarchaeum equitans-Ignicoccus hospitalis relationship
    • Giannone RJ, Huber H, Karpinets T, Heimerl T, Küper U, Rachel R et al. (2011). Proteomic characterization of cellular and molecular processes that enable the Nanoarchaeum equitans-Ignicoccus hospitalis relationship. PLoS One 6: e22942.
    • (2011) PLoS One , vol.6 , pp. e22942
    • Giannone, R.J.1    Huber, H.2    Karpinets, T.3    Heimerl, T.4    Küper, U.5    Rachel, R.6
  • 7
    • 84874854709 scopus 로고    scopus 로고
    • Integrated analysis of transcriptomic and proteomic data
    • Haider S, Pal R. (2013). Integrated analysis of transcriptomic and proteomic data. Curr Genom 14: 91-110.
    • (2013) Curr Genom , vol.14 , pp. 91-110
    • Haider, S.1    Pal, R.2
  • 8
    • 73949111750 scopus 로고    scopus 로고
    • Bacterial competition: Surviving and thriving in the microbial jungle
    • Hibbing ME, Fuqua C, Parsek MR, Peterson SB. (2010). Bacterial competition: surviving and thriving in the microbial jungle. Nat Rev Microbiol 8: 15-25.
    • (2010) Nat Rev Microbiol , vol.8 , pp. 15-25
    • Hibbing, M.E.1    Fuqua, C.2    Parsek, M.R.3    Peterson, S.B.4
  • 9
    • 0034519274 scopus 로고    scopus 로고
    • Ignicoccus gen. Nov., a novel genus of hyperthermophilic, chemolithoautotrophic Archaea, represented by two new species, Ignicoccus islandicus sp nov and Ignicoccus pacificus sp nov
    • Huber H, Burggraf S, Mayer T, Wyschkony I, Rachel R, Stetter KO. (2000). Ignicoccus gen. nov., a novel genus of hyperthermophilic, chemolithoautotrophic Archaea, represented by two new species, Ignicoccus islandicus sp nov and Ignicoccus pacificus sp nov. Int J Syst Evol Microbiol 50(Part 6): 2093-2100.
    • (2000) Int J Syst Evol Microbiol , vol.50 , pp. 2093-2100
    • Huber, H.1    Burggraf, S.2    Mayer, T.3    Wyschkony, I.4    Rachel, R.5    Stetter, K.O.6
  • 10
    • 45549103517 scopus 로고    scopus 로고
    • A dicarboxylate/4-hydroxybutyrate autotrophic carbon assimilation cycle in the hyperthermophilic Archaeum Ignicoccus hospitalis
    • Huber H, Gallenberger M, Jahn U, Eylert E, Berg IA, Kockelkorn D et al. (2008). A dicarboxylate/4-hydroxybutyrate autotrophic carbon assimilation cycle in the hyperthermophilic Archaeum Ignicoccus hospitalis. Proc Natl Acad Sci USA 105: 7851-7856.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 7851-7856
    • Huber, H.1    Gallenberger, M.2    Jahn, U.3    Eylert, E.4    Berg, I.A.5    Et Al., K.D.6
  • 11
    • 0037007636 scopus 로고    scopus 로고
    • A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont
    • Huber H, Hohn MJ, Rachel R, Fuchs T, Wimmer VC, Stetter KO. (2002). A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont. Nature 417: 63-67.
    • (2002) Nature , vol.417 , pp. 63-67
    • Huber, H.1    Hohn, M.J.2    Rachel, R.3    Fuchs, T.4    Wimmer, V.C.5    Stetter, K.O.6
  • 12
    • 39749161029 scopus 로고    scopus 로고
    • Nanoarchaeum equitans and Ignicoccus hospitalis: New insights into a unique, intimate association of two archaea
    • Jahn U, Gallenberger M, Paper W, Junglas B, Eisenreich W, Stetter KO et al. (2008). Nanoarchaeum equitans and Ignicoccus hospitalis: new insights into a unique, intimate association of two archaea. J Bacteriol 190: 1743-1750.
    • (2008) J Bacteriol , vol.190 , pp. 1743-1750
    • Jahn, U.1    Gallenberger, M.2    Paper, W.3    Junglas, B.4    Eisenreich, W.5    Stetter, K.O.6
  • 13
    • 34249798717 scopus 로고    scopus 로고
    • Insights into the autotrophic CO2 fixation pathway of the archaeon Ignicoccus hospitalis: Comprehensive analysis of the central carbon metabolism
    • Jahn U, Huber H, Eisenreich W, Hugler M, Fuchs G. (2007). Insights into the autotrophic CO2 fixation pathway of the archaeon Ignicoccus hospitalis: comprehensive analysis of the central carbon metabolism. J Bacteriol 189: 4108-4119.
    • (2007) J Bacteriol , vol.189 , pp. 4108-4119
    • Jahn, U.1    Huber, H.2    Eisenreich, W.3    Hugler, M.4    Fuchs, G.5
  • 14
    • 8644239355 scopus 로고    scopus 로고
    • Composition of the lipids of Nanoarchaeum equitans and their origin from its host Ignicoccus sp. Strain KIN4/I
    • Jahn U, Summons R, Sturt H, Grosjean E, Huber H. (2004). Composition of the lipids of Nanoarchaeum equitans and their origin from its host Ignicoccus sp. strain KIN4/I. Arch Microbiol 182: 404-413.
    • (2004) Arch Microbiol , vol.182 , pp. 404-413
    • Jahn, U.1    Summons, R.2    Sturt, H.3    Grosjean, E.4    Huber, H.5
  • 15
    • 49749094746 scopus 로고    scopus 로고
    • Ignicoccus hospitalis and Nanoarchaeum equitans: Ultrastructure, cell-cell interaction, and 3D reconstruction from serial sections of freeze-substituted cells and by electron cryotomography
    • Junglas B, Briegel A, Burghardt T, Walther P, Wirth R, Huber H et al. (2008). Ignicoccus hospitalis and Nanoarchaeum equitans: ultrastructure, cell-cell interaction, and 3D reconstruction from serial sections of freeze-substituted cells and by electron cryotomography. Arch Microbiol 90: 395-408.
    • (2008) Arch Microbiol , vol.90 , pp. 395-408
    • Junglas, B.1    Briegel, A.2    Burghardt, T.3    Walther, P.4    Wirth, R.5    Huber, H.6
  • 16
    • 77649265011 scopus 로고    scopus 로고
    • Energized outer membrane and spatial separation of metabolic processes in the hyperthermophilic Archaeon Ignicoccus hospitalis
    • Küper U, Meyer C, Müller V, Rachel R, Huber H. (2010). Energized outer membrane and spatial separation of metabolic processes in the hyperthermophilic Archaeon Ignicoccus hospitalis. Proc Natl Acad Sci USA 107: 3152-3156.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 3152-3156
    • Küper, U.1    Meyer, C.2    Müller, V.3    Rachel, R.4    Huber, H.5
  • 17
    • 79960581086 scopus 로고    scopus 로고
    • A dynamic model of proteome changes reveals new roles for transcript alteration in yeast
    • Lee MV, Topper SE, Hubler SL, Hose J, Wenger CD, Coon JJ et al. (2011). A dynamic model of proteome changes reveals new roles for transcript alteration in yeast. Mol Syst Biol 7: 514.
    • (2011) Mol Syst Biol , vol.7 , pp. 514
    • Lee, M.V.1    Topper, S.E.2    Hubler, S.L.3    Hose, J.4    Wenger, C.D.5    Coon, J.J.6
  • 18
    • 68549092907 scopus 로고    scopus 로고
    • IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering
    • Ma ZQ, Dasari S, Chambers MC, Litton MD, Sobecki SM, Zimmerman LJ et al. (2009). IDPicker 2.0: improved protein assembly with high discrimination peptide identification filtering. J Proteome Res 8: 3872-3881.
    • (2009) J Proteome Res , vol.8 , pp. 3872-3881
    • Ma, Z.Q.1    Dasari, S.2    Chambers, M.C.3    Litton, M.D.4    Sobecki, S.M.5    Zimmerman, L.J.6
  • 19
    • 84857961488 scopus 로고    scopus 로고
    • AMP-forming acetyl coenzyme A synthetase in the outermost membrane of the hyperthermophilic crenarchaeon Ignicoccus hospitalis
    • Mayer F, Küper U, Meyer C, Daxer S, Müller V, Rachel R et al. (2012). AMP-forming acetyl coenzyme A synthetase in the outermost membrane of the hyperthermophilic crenarchaeon Ignicoccus hospitalis. J Bacteriol 194: 1572-1581.
    • (2012) J Bacteriol , vol.194 , pp. 1572-1581
    • Mayer, F.1    Küper, U.2    Meyer, C.3    Daxer, S.4    Müller, V.5    Rachel, R.6
  • 23
    • 70350455958 scopus 로고    scopus 로고
    • The Iho670 fibers of Ignicoccus hospitalis: A new type of archaeal cell surface appendage
    • Müller DW, Meyer C, Gurster S, Küper U, Huber H, Rachel R et al. (2009). The Iho670 fibers of Ignicoccus hospitalis: a new type of archaeal cell surface appendage. J Bacteriol 191: 6465-6468.
    • (2009) J Bacteriol , vol.191 , pp. 6465-6468
    • Müller, D.W.1    Meyer, C.2    Gurster, S.3    Küper, U.4    Huber, H.5    Rachel, R.6
  • 24
    • 66349107635 scopus 로고    scopus 로고
    • Methods for unveiling cryptic microbial partnerships in nature
    • Orphan VJ. (2009). Methods for unveiling cryptic microbial partnerships in nature. Curr Opin Microbiol 12: 231-237.
    • (2009) Curr Opin Microbiol , vol.12 , pp. 231-237
    • Orphan, V.J.1
  • 27
    • 57049130376 scopus 로고    scopus 로고
    • A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans
    • Podar M, Anderson I, Makarova KS, Elkins JG, Ivanova N, Wall MA et al. (2008a). A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans. Genome Biol 9: R158.
    • (2008) Genome Biol , vol.9 , pp. R158
    • Podar, M.1    Anderson, I.2    Makarova, K.S.3    Elkins, J.G.4    Ivanova, N.5    Wall, M.A.6
  • 28
    • 84876741070 scopus 로고    scopus 로고
    • Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park
    • Podar M, Makarova KS, Graham DE, Wolf YI, Koonin EV, Reysenbach AL. (2013). Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park. Biol Direct 8: 9.
    • (2013) Biol Direct , vol.8 , pp. 9
    • Podar, M.1    Makarova, K.S.2    Graham, D.E.3    Wolf, Y.I.4    Koonin, E.V.5    Reysenbach, A.L.6
  • 29
    • 39749142690 scopus 로고    scopus 로고
    • The prokaryotic V4R domain is the likely ancestor of a key component of the eukaryotic vesicle transport system
    • Podar M, Wall MA, Makarova KS, Koonin EV. (2008b). The prokaryotic V4R domain is the likely ancestor of a key component of the eukaryotic vesicle transport system. Biol Direct 3: 2.
    • (2008) Biol Direct , vol.3 , pp. 2
    • Podar, M.1    Wall, M.A.2    Makarova, K.S.3    Koonin, E.V.4
  • 30
    • 0012998399 scopus 로고    scopus 로고
    • The ultrastructure of Ignicoccus: Evidence for a novel outer membrane and for intracellular vesicle budding in an archaeon
    • Rachel R, Wyschkony I, Riehl S, Huber H. (2002). The ultrastructure of Ignicoccus: evidence for a novel outer membrane and for intracellular vesicle budding in an archaeon. Archaea 1: 9-18.
    • (2002) Archaea , vol.1 , pp. 9-18
    • Rachel, R.1    Wyschkony, I.2    Riehl, S.3    Huber, H.4
  • 31
    • 84869138346 scopus 로고    scopus 로고
    • Molecular force transduction by ion channels: Diversity and unifying principles
    • Sukharev S, Sachs F. (2012). Molecular force transduction by ion channels: diversity and unifying principles. J Cell Sci 125: 3075-3083.
    • (2012) J Cell Sci , vol.125 , pp. 3075-3083
    • Sukharev, S.1    Sachs, F.2
  • 32
    • 77956320089 scopus 로고    scopus 로고
    • Quantitative proteome and transcriptome analysis of the archaeon Thermoplasma acidophilum cultured under aerobic and anaerobic conditions
    • Sun N, Pan C, Nickell S, Mann M, Baumeister W, Nagy I. (2010). Quantitative proteome and transcriptome analysis of the archaeon Thermoplasma acidophilum cultured under aerobic and anaerobic conditions. J Proteome Res 9: 4839-4850.
    • (2010) J Proteome Res , vol.9 , pp. 4839-4850
    • Sun, N.1    Pan, C.2    Nickell, S.3    Mann, M.4    Baumeister, W.5    Nagy, I.6
  • 33
    • 33847401893 scopus 로고    scopus 로고
    • MyriMatch: Highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis
    • Tabb DL, Fernando CG, Chambers MC. (2007). MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis. J Proteome Res 6: 654-661.
    • (2007) J Proteome Res , vol.6 , pp. 654-661
    • Tabb, D.L.1    Fernando, C.G.2    Chambers, M.C.3
  • 34
    • 44449127723 scopus 로고    scopus 로고
    • Correlating the transcriptome, proteome, and metabolome in the environmental adaptation of a hyperthermophile
    • Trauger SA, Kalisak E, Kalisiak J, Morita H, Weinberg MV, Menon AL et al. (2008). Correlating the transcriptome, proteome, and metabolome in the environmental adaptation of a hyperthermophile. J Proteome Res 7: 1027-1035.
    • (2008) J Proteome Res , vol.7 , pp. 1027-1035
    • Trauger, S.A.1    Kalisak, E.2    Kalisiak, J.3    Morita, H.4    Weinberg, M.V.5    Menon, A.L.6
  • 35
    • 33947380915 scopus 로고    scopus 로고
    • Adaptations to energy stress dictate the ecology and evolution of the Archaea
    • Valentine DL. (2007). Adaptations to energy stress dictate the ecology and evolution of the Archaea. Nat Rev Microbiol 5: 316-323.
    • (2007) Nat Rev Microbiol , vol.5 , pp. 316-323
    • Valentine, D.L.1
  • 36
    • 84858439862 scopus 로고    scopus 로고
    • Insights into the regulation of protein abundance from proteomic and transcriptomic analyses
    • Vogel C, Marcotte EM. (2012). Insights into the regulation of protein abundance from proteomic and transcriptomic analyses. Nat Rev Genet 13: 227-232.
    • (2012) Nat Rev Genet , vol.13 , pp. 227-232
    • Vogel, C.1    Marcotte, E.M.2
  • 37
    • 0242300069 scopus 로고    scopus 로고
    • The genome of Nanoarchaeum equitans: Insights into early archaeal evolution and derived parasitism
    • Waters E, Hohn MJ, Ahel I, Graham DE, Adams MD, Barnstead M et al. (2003). The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. Proc Natl Acad Sci USA 100: 12984-12988.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 12984-12988
    • Waters, E.1    Hohn, M.J.2    Ahel, I.3    Graham, D.E.4    Adams, M.D.5    Barnstead, M.6
  • 38
    • 84888616602 scopus 로고    scopus 로고
    • Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass
    • Wilson CM, Rodriguez Jr M, Johnson CM, Martin SL, Chu TM, Wolfinger RD et al. (2013a). Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass. Biotechnol Biofuels 6: 179.
    • (2013) Biotechnol Biofuels , vol.6 , pp. 179
    • Wilson, C.M.1    Rodriguez, M.2    Johnson, C.M.3    Martin, S.L.4    Chu, T.M.5    Wolfinger, R.D.6
  • 39
    • 84883218029 scopus 로고    scopus 로고
    • MscS-like mechanosensitive channels in plants and microbes
    • Wilson ME, Maksaev G, Haswell ES. (2013b). MscS-like mechanosensitive channels in plants and microbes. Biochemistry 52: 5708-5722.
    • (2013) Biochemistry , vol.52 , pp. 5708-5722
    • Wilson, M.E.1    Maksaev, G.2    Haswell, E.S.3
  • 40
    • 84870950237 scopus 로고    scopus 로고
    • The updated clusters of orthologous genes for Archaea: A complex ancestor of the Archaea and the byways of horizontal gene transfer
    • Wolf YI, Makarova KS, Yutin N, Koonin EV. (2012). The updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer. Biology Direct 7: 46.
    • (2012) Biology Direct , vol.7 , pp. 46
    • Wolf, Y.I.1    Makarova, K.S.2    Yutin, N.3    Koonin, E.V.4
  • 42
    • 84864853841 scopus 로고    scopus 로고
    • Filaments from Ignicoccus hospitalis show diversity of packing in proteins containing N-terminal type IV pilin helices
    • Yu X, Goforth C, Meyer C, Rachel R, Wirth R, Schroder GF et al. (2012). Filaments from Ignicoccus hospitalis show diversity of packing in proteins containing N-terminal type IV pilin helices. J Mol Biol 422: 274-281.
    • (2012) J Mol Biol , vol.422 , pp. 274-281
    • Yu, X.1    Goforth, C.2    Meyer, C.3    Rachel, R.4    Wirth, R.5    Schroder, G.F.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.