Structural basis of the substrate specificity of the FPOD/FAOD family revealed by fructosyl peptide oxidase from Eupenicillium terrenum

Acta Crystallographica Section F: Structural Biology Communications

Volumn 71, Issue , 2015, Pages 381-387

  Gan, Weiqiong ^a,b   Gao, Feng ^a   Xing, Keke ^c   Jia, Minze ^a   Liu, Haiping ^c   Gong, Weimin ^a,d  

^a INSTITUTE OF BIOPHYSICS   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c Tianjin Airport Economic Area   (China)

^d UNIVERSITY OF SCIENCE AND TECHNOLOGY OF CHINA   (China)

Author keywords

Eupenicillium terrenum; FAOD FPOD family; fructosyl peptide oxidase

Indexed keywords

EUPENICILLIUM TERRENUM;

AMADORIASE; FRUCTOSYL-PEPTIDE OXIDASE; OXIDOREDUCTASE;

AMINO ACID SEQUENCE; CHEMISTRY; ENZYME SPECIFICITY; ENZYMOLOGY; EUPENICILLIUM; GENETICS; HUMAN; METABOLISM; MOLECULAR GENETICS; PHYSIOLOGY; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE;

AMINO ACID OXIDOREDUCTASES; AMINO ACID SEQUENCE; EUPENICILLIUM; HUMANS; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SUBSTRATE SPECIFICITY;

EID: 84927635657     PISSN: None     EISSN: 2053230X     Source Type: Journal    
DOI: 10.1107/S2053230X15003921     Document Type: Article

References (36)

1. Adams, P. D. et al. (2010). Acta Cryst. D66, 213-221.
2. Akazawa, S., Karino, T., Yoshida, N., Katsuragi, T., Tani, Y. (2004). Appl. Environ. Microbiol. 70, 5882-5890.
3. Collard, F., Zhang, J., Nemet, I., Qanungo, K. R., Monnier, V. M., Yee, V. C. (2008). J. Biol. Chem. 283, 27007-27016.
4. DeLano, W. L. (2002). PyMOL. http://www.pymol.org.
5. Emsley, P., Lohkamp, B., Scott, W. G., Cowtan, K. (2010). Acta Cryst. D66, 486-501.
6. Ferri, S., Kim, S., Tsugawa, W., Sode, K. (2009). J. Diabetes Sci. Technol. 3, 585-592.
7. Ferri, S., Miura, S., Sakaguchi, A., Ishimura, F., Tsugawa, W., Sode, K. (2004). Mar. Biotechnol. 6, 625-632.
8. Fujiwara, M., Sumitani, J., Koga, S., Yoshioka, I., Kouzuma, T., Imamura, S., Kawaguchi, T., Arai, M. (2006). J. Biosci. Bioeng. 102, 241-243.
9. Fujiwara, M., Sumitani, J., Koga, S., Yoshioka, I., Kouzuma, T., Imamura, S., Kawaguchi, T., Arai, M. (2007). Appl. Microbiol. Biotechnol. 74, 813-819.
10. Hirokawa, K., Gomi, K., Bakke, M., Kajiyama, N. (2003). Arch. Microbiol. 180, 227-231.
11. Hirokawa, K., Gomi, K., Kajiyama, N. (2003). Biochem. Biophys. Res. Commun. 311, 104-111.
12. Kim, S., Ferri, S., Tsugawa, W., Mori, K., Sode, K. (2010). Biotechnol. Bioeng. 106, 358-366.
13. Kim, S., Miura, S., Ferri, S., Tsugawa, W., Sode, K. (2009). Enzyme Microb. Technol. 44, 52-56.
14. Kim, S., Nibe, E., Ferri, S., Tsugawa, W., Sode, K. (2010). Biotechnol. Lett. 32, 1123-1129.
15. Kim, S., Nibe, E., Tsugawa, W., Kojima, K., Ferri, S., Sode, K. (2012). Biotechnol. Lett. 34, 491-497.
16. Kobold, U., Jeppsson, J. O., Dü lffer, T., Finke, A., Hoelzel, W., Miedema, K. (1997). Clin. Chem. 43, 1944-1951.
17. Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A., Lopez, R., Thompson, J. D., Gibson, T. J., Higgins, D. G. (2007). Bioinformatics, 23, 2947-2948.
18. Laskowski, R. A., MacArthur, M. W., Moss, D. S., Thornton, J. M. (1993). J. Appl. Cryst. 26, 283-291.
19. Lin, Z., Zheng, J. (2010). Appl. Microbiol. Biotechnol. 86, 1613-1619.
20. McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C., Read, R. J. (2007). J. Appl. Cryst. 40, 658-674.
21. Miura, S., Ferri, S., Tsugawa, W., Kim, S., Sode, K. (2006). Biotechnol. Lett. 28, 1895-1900.
22. Miura, S., Ferri, S., Tsugawa, W., Kim, S., Sode, K. (2008). Protein Engineering Des. Sel. 21, 233-239.
23. Murshudov, G. N., Skubá k, P., Lebedev, A. A., Pannu, N. S., Steiner, R. A., Nicholls, R. A., Winn, M. D., Long, F., Vagin, A. A. (2011). Acta Cryst. D67, 355-367.
24. Potterton, E., Briggs, P., Turkenburg, M., Dodson, E. (2003). Acta Cryst. D59, 1131-1137.
25. Robert, X., Gouet, P. (2014). Nucleic Acids Res. 42, W320-W324.
26. Sakai, Y., Yoshida, N., Isogai, A., Tani, Y., Kato, N. (1995). Biosci. Biotechnol. Biochem. 59, 487-491.
27. Sakai, Y., Yoshida, N., Tani, Y., Kato, N. (1996). Biosci. Biotechnol. Biochem. 60, 150-151.
28. Takahashi, M., Pischetsrieder, M., Monnier, V. M. (1997a). J. Biol. Chem. 272, 3437-3443.
29. Takahashi, M., Pischetsrieder, M., Monnier, V. M. (1997b). J. Biol. Chem. 272, 12505-12507.
30. Winn, M. D. et al. (2011). Acta Cryst. D67, 235-242.
31. Wu, X., Chen, S. G., Petrash, J. M., Monnier, V. M. (2002). Biochemistry, 41, 4453-4458.
32. Wu, X., Takahashi, M., Chen, S. G., Monnier, V. M. (2000). Biochemistry, 39, 1515-1521.
33. Xing, K., Gan, W., Jia, M., Gao, F., Gong, W. (2013). Acta Cryst. F69, 666-668.
34. Yoshida, N., Sakai, Y., Isogai, A., Fukuya, H., Yagi, M., Tani, Y., Kato, N. (1996). Eur. J. Biochem. 242, 499-505.
35. Yoshida, N., Sakai, Y., Serata, M., Tani, Y., Kato, N. (1995). Appl. Environ. Microbiol. 61, 4487-4489.
36. Zhao, G., Song, H., Chen, Z.-W., Mathews, F. S., Jorns, M. S. (2002). Biochemistry, 41, 9751-9764.