Mineral tunnelling by fungi

Fungi in Biogeochemical Cycles

Volumn , Issue , 2006, Pages 311-327

  Smits, Mark ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

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[No Author keywords available]

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EID: 84927072866     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1017/CBO9780511550522.014     Document Type: Chapter

References (103)

1. Åberg, G., Jacks, G., Wickman, T. & Hamilton, P. J. (1990). Strontium isotopes in trees as an indicator for calcium availability. Catena, 17, 1-11.
2. Ashford, A. E., Ryde, S. & Barrow, K. D. (1994). Demonstration of a short chain polyphosphate in Pisolithus tinctorius and the implications for phosphorus transport. New Phytologist, 126, 239-47.
3. Ashford, A. E., Vesk, P. A., Orlovich, D. A., Markovina, A. L. & Allaway, W. G. (1999). Dispersed polyphosphate in fungal vacuoles in Eucalyptus pilularis/Pisolithus tinctorius ectomycorrhizas. Fungal Genetics and Biology, 28, 21-33.
4. Banfield, J. F. & Hamers, R. J. (1997). Processes at minerals and surfaces with relevance to microorganisms and prebiotic synthesis. In Geomicrobiology: Interactions between Microbes and Minerals, Vol. 35, ed. J. F. Banfield & K. H. Nealson. Washington DC: Mineralogical Society of America, pp. 81-122.
5. Barker, W. W., Welch, S. A. & Banfield, J. F. (1997). Biogeochemical weathering of silicate minerals. In Geomicrobiology: Interactions between Microbes and Minerals, Vol. 35, ed. J. F. Banfield & K. H. Nealson. Washington DC: Mineralogical Society of America, pp. 391-428.
6. Bell, L. S., Boyde, A. & Jones, S. J. (1991). Diagenetic alteration to teeth Insitu illustrated by backscattered electron imaging. Scanning, 13, 173-83.
7. Bénézeth, P., Diakonov, I. I., Pokrovski, G. S. et al. (1997). Gallium speciation in aqueous solution. Experimental study and modelling: Part 2. Solubility of a-GaOOH in acidic solutions from 150 to 250 8C and hydrolysis constants of gallium (III) to 300 8C. Geochimica et Cosmochimica Acta, 61, 1345-57.
8. Berner, R. A. (1995). Chemical weathering and its effect on atmospheric CO2 and climate. In Chemical Weathering Rates in Silicate Minerals, ed. A. F. White & S. L. Brantley. Washington DC: Mineralogical Society of America, pp. 565-83.
9. Blum, J. D., Klaue, A., Nezat, C. A. et al. (2002). Mycorrhizal weathering of apatite as an important calcium source in base-poor forest ecosystems. Nature, 417, 729-31.
10. Brandes, B., Godbold, D. L., Kuhn, A. J. & Jentschke, G. (1998). Nitrogen and phosphorus acquisition by the mycelium of the ectomycorrhizal fungus Paxillus involutus and its effect on host nutrition. New Phytologist, 140, 735-43.
11. Brandtberg, P. O. & Simonsson, M. (2003). Aluminum and iron chemistry in the O horizon changed by a shift in tree species composition. Biogeochemistry, 63, 207-28.
12. Bücking, H. & Heyser, W. (1999). Elemental composition and function of polyphosphates in ectomycorrhizal fungi-an X-ray microanalytical study. Mycological Research, 103, 31-9.
13. Chang, T. T. & Li, C. Y. (1998). Weathering of limestone, marble, and calcium phosphate by ectomycorrhizal fungi and associated microorganisms. Taiwan Journal of Forest Science, 13, 85-90.
14. Chou, L. & Wollast, R. (1985). Steady-state kinetics and dissolution mechanisms of albite. American Journal of Science, 285, 963-93.
15. Danielsson, R. M. & Visser, S. (1989). Effects of forest soil acidification on ectomycorrhizal and vesicular-arbuscular mycorrhizal development. New Phytologist, 112, 41-7.
16. Davidson, F. A. (1998). Modelling the qualitative response of fungal mycelia to heterogeneous environments. Journal of Theoretical Biology, 195, 281-92.
17. Davidson, F. A. & Olsson, S. (2000). Translocation induced outgrowth of fungi in nutrientfree environments. Journal of Theoretical Biology, 205, 73-84.
18. Delcourt, P. A., Petty, W. H. & Delcourt, H. R. (1996). Late-Holocene formation of Lake Michigan beach ridges correlated with a 70-yr oscillation in global climate. Quaternary Research, 45, 321-6.
19. Dickie, I. A., Xu, B. & Koide, R. T. (2002). Vertical niche differentiation of ectomycorrhizal hyphae in soil as shown by T-RFLP analysis. New Phytologist, 156, 527-35.
20. Dijkstra, F. & Smits, M. (2002). Tree species effects on calcium cycling: The role of calcium uptake in deep soil. Ecosystems, 5, 385-98.
21. Dye, T. J., Lucy, D. & Pollard, A. M. (1995). The occurrence and implications of postmortem pink teeth in forensic and archaeological cases. International Journal of Osteoarchaeology, 5, 339-48.
22. Egli, S. (1981). Mycorrhizae and their vertical distribution in oak stands. Schweizerische Zeitschrift für Forstwesen, 132, 345-53.
23. Faarinen, M. (2003). Development of the Lund AMS facility for detection of 26Al-with applications in plant ecology. Unpublished Ph.D. thesis, Lund University, Lund.
24. Faarinen, M., Magnusson, C. E., Hellborg, R. et al. (2001). Al-26 investigations at the AMSlaboratory in Lund. Journal of Inorganic Biochemistry, 87, 57-61.
25. Falandysz, J., Szymczyk, K., Ichihashi, H. et al. (2001). ICP/MS and ICP/AES elemental analysis (38 elements) of edible wild mushrooms growing in Poland. Food Additives and Contaminants, 18, 503-13.
26. Fransson, P. M. A., Taylor, A. F. S. & Finlay, R. D. (2000). Effects of continuous optimal fertilization on belowground ectomycorrhizal community structure in a Norway spruce forest. Tree Physiology, 20, 599-606.
27. Gadd, G. M. (1999). Fungal production of citric and oxalic acid: Importance in metal speciation, physiology and biogeochemical processes. Advances in Microbial Physiology, 41, 47-92.
28. Gautier, J. M., Oelkers, E. H. & Schott, J. (1994). Experimental study of K-feldspar dissolution rates as a function of chemical affinity at 150 8C and pH-9. Geochimica et Cosmochimica Acta, 58, 4549-60.
29. Giesler, R., Högberg, M. & Högberg, P. (1998). Soil chemistry and plants in Fennoscandian boreal forest as exemplified by a local gradient. Ecology, 79, 119-37.
30. Giesler, R., Ilvesniemi, H., Nyberg, L. et al. (2000). Distribution and mobilization of Al, Fe and Si in three podzolic soil profiles in relation to the humus layer. Geoderma, 94, 249-63.
31. Glowa, K. R., Arocena, J. M. & Massicotte, H. B. (2003). Extraction of potassium and/or magnesium from selected soil minerals by Piloderma. Geomicrobiology Journal, 20, 99-111.
32. Goodman, D. M. & Trofymow, J. A. (1998). Distribution of ectomycorrhizas in microhabitats in mature and old-growth stands of Douglas-fir on southeastern Vancouver island. Soil Biology and Biochemistry, 30, 2127-38.
33. Hacket, C. (1976). Microscopical focal destruction (tunnels) in exhumed human bone. Medicine Science and the Law, 21, 243-64.
34. Hagerberg, D., Thelin, G. & Wallander, H. (2003). The production of ectomycorrhizal mycelium in forests: Relation between forest nutrient status and local mineral sources. Plant and Soil, 252, 279-90.
35. Heinonsalo, J., Jorgensen, K. S. & Sen, R. (2001). Microcosm-based analyses of Scots pine seedling growth, ectomycorrhizal fungal community structure and bacterial carbon utilization profiles in boreal forest humus and underlying illuvial mineral horizons. FEMS Microbiology Ecology, 36, 73-84.
36. Heinonsalo, J., Hurme, K. R. & Sen, R. (2004). Recent C14-labelled assimilate allocation to Scots pine seedling root and mycorrhizosphere compartments developed on reconstructed podzol humus, E-and B-mineral horizons. Plant and Soil, 259, 111-21.
37. Hoffland, E., Giesler, R., Jongmans, T. & van Breemen, N. (2002). Increasing feldspar tunneling by fungi across a North Sweden podzol chronosequence. Ecosystems, 5, 11-22.
38. Hoffland, E., Giesler, R., Jongmans, A. G. & van Breemen, N. (2003). Feldspar tunneling by fungi along natural productivity gradients. Ecosystems, 6, 739-46.
39. Hoffland, E., Kuyper T W., Wallander, H. et al. (2004). The role of fungi in weathering. Frontiers in Ecology, 2, 258-64.
40. Högberg, P., Nordgren, A., Buchmann, N. et al. (2001). Large-scale forest girdling shows that current photosynthesis drives soil respiration. Nature, 411, 789-92.
41. Huggett, R. J. (1998). Soil chronosequences, soil development, and soil evolution: A critical review. Catena, 32, 155-72.
42. Jongmans, A. G., van Breemen, N., Lundström, U. S. et al. (1997). Rock-eating fungi. Nature, 389, 682-3.
43. Kinraide, T. B. (1991). Identity of the rhizotoxic aluminum species. Plant and Soil, 134, 167-78.
44. Landeweert, R., Hoffland, E., Finlay, R. D., Kuyper, T. W. & van Breemen, N. (2001). Linking plants to rocks: Ectomycorrhizal fungi mobilize nutrients from minerals. Trends in Ecology and Evolution, 16, 248-54.
45. Landeweert, R., Leeflang, P., Kuyper, T. W. et al. (2003). Molecular identification of ectomycorrhizal mycelium in soil horizons. Applied and Environmental Microbiology, 69, 327-33.
46. Lasaga, A. & KirkPatrick, R. (1981) Kinetics of Geochemical Processes. Washington, DC: Mineralogical Society of America.
47. Lasaga, A. C. & Luttge, A. (2003). A model for crystal dissolution. European Journal of Mineralogy, 15, 603-15.
48. Lawrence, G. B., David, M. B. & Shortle, W. C. (1995). A new mechanism for calcium loss in forest-floor soils. Nature, 378, 162-5.
49. Leski, T., Rudawska, M. & Kieliszewska-Rokicka, B. (1995). Intraspecific aluminium response in Suillus luteus (L.) S. F.Gray., an ectomycorrhizal symbiont of Scots Pine. Acta Societatis Botanicorum Poloniae, 64, 97-105.
50. Leyval, C., Laheurte, F., Belgy, G. & Berthelin, J. (1990). Weathering of micas in the rhizospheres of maize, pine and beech seedlings influenced by mycorrhizal and bacterial inoculation. Symbiosis, 9, 105-9.
51. Likens, G. E., Driscoll, C. T., Buso, D. C. et al. (1994). The biogeochemistry of potassium in the Hubbard Brook Experimental Forest, New Hampshire. Biogeochemistry, 25, 61-125.
52. Likens, G. E., Driscoll, C. T., Buso, D. C. et al. (1998). The biogeochemistry of calcium at Hubbard Brook. Biogeochemistry, 41, 89-173.
53. Ma, J. F. & Hiradate, S. (2000). Form of aluminium for uptake and translocation in buckwheat (Fagopyrum esculentum Moench). Planta, 211, 355-60.
54. Ma, J. F., Hiradate, S., Nomoto, K., Iwashita, T. & Matsumoto, H. (1997). Internal detoxification mechanism of Al in hydrangea-identification of Al form in the leaves. Plant Physiology, 113, 1033-9.
55. Ma, J. F., Hiradate, S. & Matsumoto, H. (1998). High aluminum resistance in buckwheat-II. Oxalic acid detoxifies aluminum internally. Plant Physiology, 117, 753-9.
56. Martin, F., Rubini, P., Côté, R. & Kottke, I. (1994). Aluminium polyphosphate complexes in the mycorrhizal basidiomycete Laccaria bicolor: A 27Al-nuclear magnetic resonance study. Planta, 194, 241-6.
57. Mulder, J., De Wit, H. A., Boonen, H. W. J. & Bakken, L. R. (2001). Increased levels of aluminium in forest soils: Effects on the stores of soil organic carbon. Water Air and Soil Pollution, 130, 989-94.
58. Müller, M., Anke, M. & Illing-Günther, H. (1997). Aluminium in wild mushrooms and cultivated Agaricus bisporus. Zeitschrift für Lebensmitteluntersuchung und Forschung A, 205, 242-7.
59. Ochs, M. (1996). Influence of humified and non-humified natural organic compounds on mineral dissolution. Chemical Geology, 132, 119-24.
60. Ochs, M., Brunner, I., Strumm, W. & Cosovic, B. (1993). Effects of root exudates and humic substances on weathering kinetics. Water Air and Soil Pollution, 68, 213-29.
61. Oelkers, E. H., Schott, J. & Devidal, J. L. (1994). The effect of aluminum, pH, and chemical affinity on the rates of aluminosilicate dissolution reactions. Geochimica et Cosmochimica Acta, 58, 2011-24.
62. Paris, F., Bonnaud, P., Ranger, J. & Lapeyrie, F. (1995a). In vitro weathering of phlogopite by ectomycorrhizal fungi: I. Effect of Kþ and Mg2þ deficiency on phyllosilicate evolution. Plant and Soil, 177, 191-201.
63. Paris, F., Bonnaud, P., Ranger, J., Robert, M. & Lapeyrie, F. (1995b). Weathering of ammonium-or calcium-saturated 2:1 phyllosilicates by ectomycorrhizal fungi in vitro. Soil Biology and Biochemistry, 27, 1237-44.
64. Paris, F., Botton, B. & Lapeyrie, F. (1996). In vitro weathering of phlogopite by ectomycorrhizal fungi. II. Effect of Kþ and Mgþ deficiency and N sources on accumulation of oxalate and Hþ. Plant and Soil, 179, 141-50.
65. Petty, W. H., Delcourt, P. A. & Delcourt, H. R. (1996). Holocene lake-level fluctuations and beach-ridge development along the northern shore of Lake Michigan, USA. Journal of Paleolimnology, 15, 147-69.
66. Piepenbrink, H. (1986). Two examples of biogenous dead bone decomposition and their consequences for taphonomic interpretation. Journal of Archaeological Science, 13, 417-30.
67. Poole, D. F. G. & Tratman, E. K. (1978). Postmortem changes in human-teeth from late upper Paleolithic-Mesolithic occupants of an English limestone cave. Archives of Oral Biology, 23, 1115-20.
68. Poszwa, A., Dambrine, E., Pollier, B. & Atteia, O. (2000). A comparison between Ca and Sr cycling in forest ecosystems. Plant and Soil, 225, 299-310.
69. Rambold, G. & Agerer, R. (1997). DEEMY-The concept of a characterization and determination system for ectomycorrhizae. Mycorrhiza, 7, 113-16.
70. Read, D. J. (1991). Mycorrhizas in ecosystems. Experientia, 47, 376-91.
71. Ritchie, G. S. P. (1995). Soluble aluminium in soils: Principles and practicalities. Plant and Soil, 171, 17-27.
72. Romao, P. M. S. & Rattazzi, A. (1996). Biodeterioration on megalithic monuments. Study of lichens’ colonization on Tapadao and Zambujeiro dolmens (Southern Portugal). International Biodeterioration and Biodegradation, 37, 23-35.
73. Rosling, A., Landeweert, R., Lindahl, B. et al. (2003). Vertical distribution of ectomycorrhizal root tips in a podzol soil profile. New Phytologist, 159, 775-83.
74. Rudawska, M. & Leski, T. (1998). Aluminium tolerance of different Paxillus involutus Fr. strains originating from polluted and nonpolluted sites. Acta Societatis Botanicorum Poloniae, 67, 115-22.
75. Rustad, L. E. & Cronan, C. S. (1988). Element loss and retention during litter decay in a red spruce stand in Maine. Canadian Journal of Forest Research, 18, 947-53.
76. Rustad, L. E. & Cronan, C. S. (1995). Biogeochemical controls on aluminum chemistry in the O horizon of a red spruce (Picea rubens Sarg.) stand in central Maine, USA. Biogeochemistry, 29, 107-29.
77. Shepherd, V. A., Orlovich, D. A. & Ashford, A. E. (1993a). Cell-to-cell transport via motile tubules in growing hyphae of a fungus. Journal of Cell Science, 105, 1173-8.
78. Shepherd, V. A., Orlovich, D. A. & Ashford, A. E. (1993b). A dynamic continuum of pleiomorphic tubules and vacuoles in growing hyphae of a fungus. Journal of Cell Science, 104, 495-507.
79. Shiller, A. M. & Frilot, D. M. (1996). The geochemistry of gallium relative to aluminum in Californian streams. Geochimica et Cosmochimica Acta, 60, 1323-8.
80. Smith, S. E. & Read, D. J. (1997) Mycorrhizal Symbiosis. San Diego: Academic Press.
81. Smits, M., Hoffland, E. & van Breemen, N. (2005). Contribution of mineral tunneling to total feldspar weathering. Geoderma, 125, 59-69.
82. Soggnaes, R. (1950). Histological studies of ancient and recent teeth with special regard to differential diagnosis between intra-vitam and post mortem characteristics. American Journal of Physical Anthropology, 8, 269-70.
83. Sterflinger, K. (2000). Fungi as geologic agents. Geomicrobiology Journal, 17, 97-124.
84. Sverdrup, H. (1990). Kinetics of Base Cation Release due to Chemical Weathering. Lund: Lund University Press.
85. Sverdrup, H. (1996). Geochemistry, the key to understanding environmental chemistry. Science of the Total Environment, 183, 67-87.
86. Sverdrup, H., Hagen-Thorn, A., Holmqvist, J. et al. (2002). Biogeochemical processes and mechanisms. In Developing Principles and Models for Sustainable Forestry in Sweden, ed. H. Sverdrup & I. Stjernquist. Dordrecht: Kluwer Academic Publishers, pp. 91-196.
87. Tedersoo, L., Koljalg, U., Hallenberg, N. & Larsson, K. H. (2003). Fine scale distribution of ectomycorrhizal fungi and roots across substrate layers including coarse woody debris in a mixed forest. New Phytologist, 159, 153-65.
88. Ugolini, F. C., Dahlgren, R., Righi, D. & Chauvel, A. (1987). The mechanism of podzolization as revealed by soil solution studies. In Podzols et Podzolisation, Proceedings, Symposium, 10-11 April 1986. Poitiers: CNRS, pp. 195-203.
89. van Breemen, N., Finlay, R. D., Lundström, U. S. et al. (2000a). Mycorrhizal weathering: A true case of mineral plant nutrition? Biogeochemistry, 49, 53-67.ad
90. van Breemen, N., Lundstrom, U. S. & Jongmans, A. G. (2000b). Do plants drive podzolization via rock-eating mycorrhizal fungi? Geoderma, 94, 163-71.
91. Väre, H. (1990). Aluminum polyphosphate in the ectomycorrhizal fungus Suillus variegatus (Fr.) O. Kunze as revealed by energy dispersive spectrometry. New Phytologist, 116, 663-8.
92. Vogt, K. A., Dahlgren, R. A., Ugolini, F. C. et al. (1987). Aluminium, Fe, Ca, Mg, K, M, Cu, Zn and P in above-and belowground biomass. II. Pools and circulation in a subalpine Abies amabilis stand. Biogeochemistry, 4, 295-311.
93. Wallander, H. (2000). Uptake of P from apatite by Pinus sylvestris seedlings colonised by different ectomycorrhizal fungi. Plant and Soil, 218, 249-56.
94. Wallander, H. & Wickman, T. (1999). Biotite and microcline as potassium sources in ectomycorrhizal and non-mycorrhizal Pinus sylvestris seedlings. Mycorrhiza, 9, 25-32.
95. Wallander, H., Wickman, T. & Jacks, G. (1997). Apatite as a P source in mycorrhizal and non-mycorrhizal Pinus sylvestris seedlings. Plant and Soil, 196, 123-31.
96. Wallander, H., Johansson, L. & Pallon, J. (2002). PIXE analysis to estimate the elemental composition of ectomycorrhizal rhizomorphs grown in contact with different minerals in forest soil. FEMS Microbiology Ecology, 39, 147-56.
97. Wallander, H., Mahmood, S., Hagerberg, D., Johansson, L. & Pallon, J. (2003). Elemental composition of ectomycorrhizal mycelia identified by PCR-RFLP analysis and grown in contact with apatite or wood ash in forest soil. FEMS Microbiology Ecology, 44, 57-65.
98. Wallander, H., Goransson, H. & Rosengren, U. (2004). Production, standing biomass and natural abundance ofN15 and C13 in ectomycorrhizal mycelia collected at different soil depths in two forest types. Oecologia, 139, 89-97.
99. Watmough, S. A. & Dillon, P. J. (2003). Ecology-mycorrhizal weathering in base-poor forests. Nature, 423, 823-4.
100. Welch, S. A., Taunton, A. E. & Banfield, J. F. (2002). Effect of microorganisms and microbial metabolites on apatite dissolution. Geomicrobiology Journal, 19, 343-67.
101. Werelds, R. (1962). Nouvelles observations sur les dégradations post-mortem de la dentine et du cément des dents inhumé es. Bulletin du Groupment Internationale pour la Recherche Scientifique en Stomatologie, 5, 559-91.
102. White, A. F. (1995). Chemical weathering rates of silicate minerals in soils. In Chemical Weathering Rates of Silicate Minerals, ed. A. F. White & S. L. Brantley. Washington, DC: Mineralogical Society of America, pp. 407-61.
103. Zhou, Z. H. & Hogetsu, T. (2002). Subterranean community structure of ectomycorrhizal fungi under Suillus grevillei sporocarps in a Larix kaempferi forest. New Phytologist, 154, 529-39.