메뉴 건너뛰기




Volumn 206, Issue 3, 2015, Pages 1075-1085

Mathematical modelling of the diurnal regulation of the MEP pathway in Arabidopsis

Author keywords

2 C methyl D erythritol 4 phosphate (MEP) pathway; Arabidopsis thaliana; Isoprenoids; Mathematical modelling; Plant metabolism; Systems biology; Whole plant physiology

Indexed keywords

CHLOROPLAST; DICOTYLEDON; DIURNAL ACTIVITY; ENZYME ACTIVITY; EXPERIMENTAL STUDY; FLUX MEASUREMENT; INTEGRATED APPROACH; ISOPRENOID; METABOLISM; NUMERICAL MODEL; PHOTOSYNTHESIS; THEORETICAL STUDY;

EID: 84926517052     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/nph.13258     Document Type: Article
Times cited : (70)

References (48)
  • 1
    • 83055187942 scopus 로고    scopus 로고
    • A quantitative comparison of Calvin-Benson cycle models
    • Arnold A, Nikoloski Z. 2011. A quantitative comparison of Calvin-Benson cycle models. Trends in Plant Science 16: 676-683.
    • (2011) Trends in Plant Science , vol.16 , pp. 676-683
    • Arnold, A.1    Nikoloski, Z.2
  • 2
    • 69249103778 scopus 로고    scopus 로고
    • Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations
    • Arrivault S, Guenther M, Ivakov A, Feil R, Vosloh D, van Dongen JT, Sulpice R, Stitt M. 2009. Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations. Plant Journal 59: 826-839.
    • (2009) Plant Journal , vol.59 , pp. 826-839
    • Arrivault, S.1    Guenther, M.2    Ivakov, A.3    Feil, R.4    Vosloh, D.5    van Dongen, J.T.6    Sulpice, R.7    Stitt, M.8
  • 3
    • 84904173300 scopus 로고    scopus 로고
    • Methylerythritol 4-phosphate (MEP) pathway metabolic regulation
    • Banerjee A, Sharkey TD. 2014. Methylerythritol 4-phosphate (MEP) pathway metabolic regulation. Natural Products Reports 31: 1043-1055.
    • (2014) Natural Products Reports , vol.31 , pp. 1043-1055
    • Banerjee, A.1    Sharkey, T.D.2
  • 4
    • 84878768243 scopus 로고    scopus 로고
    • Feedback inhibition of deoxy-D-xylulose-5-phosphate synthase regulates the methylerythritol 4-phosphate pathway
    • Banerjee A, Wu Y, Banerjee R, Li Y, Yan H, Sharkey TD. 2013. Feedback inhibition of deoxy-D-xylulose-5-phosphate synthase regulates the methylerythritol 4-phosphate pathway. Journal of Biological Chemistry 288: 16 926-16 936.
    • (2013) Journal of Biological Chemistry , vol.288 , pp. 16 926-16 936
    • Banerjee, A.1    Wu, Y.2    Banerjee, R.3    Li, Y.4    Yan, H.5    Sharkey, T.D.6
  • 6
    • 0001065489 scopus 로고
    • Determination of phytyl diphosphate and geranylgeranyl diphosphate in etiolated oat seedlings
    • Benz J, Fischer I, Rüdiger W. 1983. Determination of phytyl diphosphate and geranylgeranyl diphosphate in etiolated oat seedlings. Phytochemistry 22: 2801-2804.
    • (1983) Phytochemistry , vol.22 , pp. 2801-2804
    • Benz, J.1    Fischer, I.2    Rüdiger, W.3
  • 7
    • 84867838237 scopus 로고    scopus 로고
    • 2C-Methyl-D-erythritol 4-phosphate enhances and sustains cyclodiphosphate synthase IspF activity
    • Bitok JK, Meyers CF. 2012. 2C-Methyl-D-erythritol 4-phosphate enhances and sustains cyclodiphosphate synthase IspF activity. ACS Chemical Biology 7: 1702-1710.
    • (2012) ACS Chemical Biology , vol.7 , pp. 1702-1710
    • Bitok, J.K.1    Meyers, C.F.2
  • 9
    • 67650915528 scopus 로고    scopus 로고
    • Unravelling the regulatory mechanisms that modulate the MEP pathway in higher plants
    • Cordoba E, Salmi M, León P. 2009. Unravelling the regulatory mechanisms that modulate the MEP pathway in higher plants. Journal of Experimental Botany 60: 2933-2943.
    • (2009) Journal of Experimental Botany , vol.60 , pp. 2933-2943
    • Cordoba, E.1    Salmi, M.2    León, P.3
  • 10
    • 51749110466 scopus 로고    scopus 로고
    • Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development
    • Covington MF, Maloof JN, Straume M, Kay SA, Harmer SL. 2008. Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development. Genome Biology 9: R130.
    • (2008) Genome Biology , vol.9 , pp. R130
    • Covington, M.F.1    Maloof, J.N.2    Straume, M.3    Kay, S.A.4    Harmer, S.L.5
  • 11
    • 32644481938 scopus 로고    scopus 로고
    • Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis
    • Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible WR. 2005. Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiology 139: 5-17.
    • (2005) Plant Physiology , vol.139 , pp. 5-17
    • Czechowski, T.1    Stitt, M.2    Altmann, T.3    Udvardi, M.K.4    Scheible, W.R.5
  • 17
    • 0001237873 scopus 로고
    • Subcellular metabolite levels in spinach leaves: regulation of sucrose synthesis during diurnal alterations in photosynthetic partitioning
    • Gerhardt R, Stitt M, Heldt HW. 1987. Subcellular metabolite levels in spinach leaves: regulation of sucrose synthesis during diurnal alterations in photosynthetic partitioning. Plant Physiology 83: 399-407.
    • (1987) Plant Physiology , vol.83 , pp. 399-407
    • Gerhardt, R.1    Stitt, M.2    Heldt, H.W.3
  • 19
    • 77954210751 scopus 로고    scopus 로고
    • Analysis of 1-deoxy-D-xylulose 5-phosphate synthase activity in grey poplar leaves using isotope ratio mass spectrometry
    • Ghirardo A, Zimmer I, Brüggemann N, Schnitzler JP. 2010. Analysis of 1-deoxy-D-xylulose 5-phosphate synthase activity in grey poplar leaves using isotope ratio mass spectrometry. Phytochemistry 71: 918-922.
    • (2010) Phytochemistry , vol.71 , pp. 918-922
    • Ghirardo, A.1    Zimmer, I.2    Brüggemann, N.3    Schnitzler, J.P.4
  • 20
    • 33749120080 scopus 로고    scopus 로고
    • Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes
    • Gibon Y, Usadel B, Blaesing OE, Kamlage B, Hoehne M, Trethewey R, Stitt M. 2006. Integration of metabolite with transcript and enzyme activity profiling during diurnal cycles in Arabidopsis rosettes. Genome Biology 7: R76.
    • (2006) Genome Biology , vol.7 , pp. R76
    • Gibon, Y.1    Usadel, B.2    Blaesing, O.E.3    Kamlage, B.4    Hoehne, M.5    Trethewey, R.6    Stitt, M.7
  • 21
    • 42049115235 scopus 로고    scopus 로고
    • Dynamics of Cdc42 network embodies a Turing-type mechanism of yeast cell polarity
    • Goryachev AB, Pokhilko AV. 2008. Dynamics of Cdc42 network embodies a Turing-type mechanism of yeast cell polarity. FEBS Letters 582: 1437-1443.
    • (2008) FEBS Letters , vol.582 , pp. 1437-1443
    • Goryachev, A.B.1    Pokhilko, A.V.2
  • 22
    • 26444516348 scopus 로고    scopus 로고
    • Characterization of the Arabidopsis clb6 mutant illustrates the importance of posttranscriptional regulation of the methyl-d-erythritol 4-phosphate pathway
    • Guevara-García A, San Román C, Arroyo A, Cortés ME, de la Luz Gutiérrez-Nava M, León P. 2005. Characterization of the Arabidopsis clb6 mutant illustrates the importance of posttranscriptional regulation of the methyl-d-erythritol 4-phosphate pathway. Plant Cell 17: 628-643.
    • (2005) Plant Cell , vol.17 , pp. 628-643
    • Guevara-García, A.1    San Román, C.2    Arroyo, A.3    Cortés, M.E.4    de la Luz Gutiérrez-Nava, M.5    León, P.6
  • 23
    • 84877038735 scopus 로고    scopus 로고
    • Enzyme inhibitor studies reveal complex control of methyl-d-erythritol 4-phosphate (MEP) pathway enzyme expression in Catharanthus roseus
    • Han M, Heppel SC, Su T, Bogs J, Zu Y, An Z, Rausch T. 2013. Enzyme inhibitor studies reveal complex control of methyl-d-erythritol 4-phosphate (MEP) pathway enzyme expression in Catharanthus roseus. PLoS ONE 8: e62467.
    • (2013) PLoS ONE , vol.8 , pp. e62467
    • Han, M.1    Heppel, S.C.2    Su, T.3    Bogs, J.4    Zu, Y.5    An, Z.6    Rausch, T.7
  • 24
    • 33644813858 scopus 로고    scopus 로고
    • Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis
    • Harmer SL, Kay SA. 2005. Positive and negative factors confer phase-specific circadian regulation of transcription in Arabidopsis. Plant Cell 17: 1926-1940.
    • (2005) Plant Cell , vol.17 , pp. 1926-1940
    • Harmer, S.L.1    Kay, S.A.2
  • 25
    • 0015949374 scopus 로고
    • A linear steady-state treatment of enzymatic chains. Critique of the crossover theorem and a general procedure to identify interaction sites with an effector
    • Heinrich R, Rapoport TA. 1974. A linear steady-state treatment of enzymatic chains. Critique of the crossover theorem and a general procedure to identify interaction sites with an effector. European Journal of Biochemistry 42: 97-105.
    • (1974) European Journal of Biochemistry , vol.42 , pp. 97-105
    • Heinrich, R.1    Rapoport, T.A.2
  • 26
    • 84856585187 scopus 로고    scopus 로고
    • A raison d'etre for two distinct pathways in the early steps of plant isoprenoid biosynthesis?
    • Hemmerlin A, Harwood JL, Bach TJ. 2012. A raison d'etre for two distinct pathways in the early steps of plant isoprenoid biosynthesis? Progress in Lipid Research 51: 95-148.
    • (2012) Progress in Lipid Research , vol.51 , pp. 95-148
    • Hemmerlin, A.1    Harwood, J.L.2    Bach, T.J.3
  • 27
    • 26944476691 scopus 로고    scopus 로고
    • The Arabidopsis IspH homolog is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis
    • Hsieh MH, Goodman HM. 2005. The Arabidopsis IspH homolog is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis. Plant Physiology 138: 641-653.
    • (2005) Plant Physiology , vol.138 , pp. 641-653
    • Hsieh, M.H.1    Goodman, H.M.2
  • 28
    • 0036620495 scopus 로고    scopus 로고
    • Kinetics of antioxidative defence responses to photosensitisation in porphyrin-accumulating tobacco plants
    • Keetman U, Mock HP, Grimm B. 2002. Kinetics of antioxidative defence responses to photosensitisation in porphyrin-accumulating tobacco plants. Plant Physiology and Biochemistry 40: 697-707.
    • (2002) Plant Physiology and Biochemistry , vol.40 , pp. 697-707
    • Keetman, U.1    Mock, H.P.2    Grimm, B.3
  • 29
    • 84871918307 scopus 로고    scopus 로고
    • Metabolic profiling of the methylerythritol phosphate pathway reveals the source of post-illumination isoprene burst from leaves
    • Li Z, Sharkey TD. 2013. Metabolic profiling of the methylerythritol phosphate pathway reveals the source of post-illumination isoprene burst from leaves. Plant, Cell & Environment 36: 429-437.
    • (2013) Plant, Cell & Environment , vol.36 , pp. 429-437
    • Li, Z.1    Sharkey, T.D.2
  • 31
    • 33745675734 scopus 로고    scopus 로고
    • Dimethylallyl diphosphate and geranyl diphosphate pools of plant species characterized by different isoprenoid emissions
    • Nogués I, Brilli F, Loreto F. 2006. Dimethylallyl diphosphate and geranyl diphosphate pools of plant species characterized by different isoprenoid emissions. Plant Physiology 141: 721-730.
    • (2006) Plant Physiology , vol.141 , pp. 721-730
    • Nogués, I.1    Brilli, F.2    Loreto, F.3
  • 34
    • 84893484757 scopus 로고    scopus 로고
    • Adjustment of carbon fluxes to light conditions regulates the daily turnover of starch in plants: a computational model
    • Pokhilko A, Flis A, Sulpice R, Stitt M, Ebenhöh O. 2014. Adjustment of carbon fluxes to light conditions regulates the daily turnover of starch in plants: a computational model. Molecular BioSystems 10: 613-627.
    • (2014) Molecular BioSystems , vol.10 , pp. 613-627
    • Pokhilko, A.1    Flis, A.2    Sulpice, R.3    Stitt, M.4    Ebenhöh, O.5
  • 35
    • 84875068918 scopus 로고    scopus 로고
    • Modelling the widespread effects of TOC1 signalling on the plant circadian clock and its outputs
    • Pokhilko A, Mas P, Millar AJ. 2013. Modelling the widespread effects of TOC1 signalling on the plant circadian clock and its outputs. BMC Systems Biology 7: 23.
    • (2013) BMC Systems Biology , vol.7 , pp. 23
    • Pokhilko, A.1    Mas, P.2    Millar, A.J.3
  • 36
    • 84888422431 scopus 로고    scopus 로고
    • Arabidopsis J-protein J20 delivers the first enzyme of the plastidial isoprenoid pathway to protein quality control
    • Pulido P, Toledo-Ortiz G, Phillips MA, Wright LP, Rodríguez-Concepción M. 2013. Arabidopsis J-protein J20 delivers the first enzyme of the plastidial isoprenoid pathway to protein quality control. Plant Cell 25: 4183-4194.
    • (2013) Plant Cell , vol.25 , pp. 4183-4194
    • Pulido, P.1    Toledo-Ortiz, G.2    Phillips, M.A.3    Wright, L.P.4    Rodríguez-Concepción, M.5
  • 37
    • 77950535134 scopus 로고    scopus 로고
    • Mathematical modeling-guided evaluation of biochemical, developmental, environmental, and genotypic determinants of essential oil composition and yield in peppermint leaves
    • Rios-Estepa R, Lange I, Lee JM, Lange BM. 2010. Mathematical modeling-guided evaluation of biochemical, developmental, environmental, and genotypic determinants of essential oil composition and yield in peppermint leaves. Plant Physiology 152: 2105-2119.
    • (2010) Plant Physiology , vol.152 , pp. 2105-2119
    • Rios-Estepa, R.1    Lange, I.2    Lee, J.M.3    Lange, B.M.4
  • 39
    • 70350480811 scopus 로고    scopus 로고
    • Phytoene synthase activity controls the biosynthesis of carotenoids and the supply of their metabolic precursors in dark-grown Arabidopsis seedlings
    • Rodríguez-Villalón A, Gas E, Rodríguez-Concepción M. 2009. Phytoene synthase activity controls the biosynthesis of carotenoids and the supply of their metabolic precursors in dark-grown Arabidopsis seedlings. Plant Journal 60: 424-435.
    • (2009) Plant Journal , vol.60 , pp. 424-435
    • Rodríguez-Villalón, A.1    Gas, E.2    Rodríguez-Concepción, M.3
  • 40
    • 84861554979 scopus 로고    scopus 로고
    • Carotenoid biosynthesis in Arabidopsis: a colorful pathway
    • Ruiz-Sola MA, Rodríguez-Concepción M. 2012. Carotenoid biosynthesis in Arabidopsis: a colorful pathway. Arabidopsis Book 10: e0158.
    • (2012) Arabidopsis Book , vol.10 , pp. e0158
    • Ruiz-Sola, M.A.1    Rodríguez-Concepción, M.2
  • 43
    • 84877652929 scopus 로고    scopus 로고
    • Network analysis of the MVA and MEP pathways for isoprenoid synthesis
    • Vranová E, Coman D, Gruissem W. 2013. Network analysis of the MVA and MEP pathways for isoprenoid synthesis. Annual Review of Plant Biology 64: 665-700.
    • (2013) Annual Review of Plant Biology , vol.64 , pp. 665-700
    • Vranová, E.1    Coman, D.2    Gruissem, W.3
  • 44
    • 67651033743 scopus 로고    scopus 로고
    • Environmental effects on spatial and temporal patterns of leaf and root growth
    • Walter A, Silk WK, Schurr U. 2009. Environmental effects on spatial and temporal patterns of leaf and root growth. Annual Review of Plant Biology 60: 279-304.
    • (2009) Annual Review of Plant Biology , vol.60 , pp. 279-304
    • Walter, A.1    Silk, W.K.2    Schurr, U.3
  • 48
    • 84868318317 scopus 로고    scopus 로고
    • Metabolite profiling identified methylerythritol cyclodiphosphate efflux as a limiting step in microbial isoprenoid production
    • Zhou K, Zou R, Stephanopoulos G, Too HP. 2012. Metabolite profiling identified methylerythritol cyclodiphosphate efflux as a limiting step in microbial isoprenoid production. PLoS ONE 7: e47513.
    • (2012) PLoS ONE , vol.7 , pp. e47513
    • Zhou, K.1    Zou, R.2    Stephanopoulos, G.3    Too, H.P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.