-
1
-
-
77954591874
-
Global pollinator declines: trends, impacts and drivers
-
Potts SG, Biesmeijer JC, Kremen C, Neumann P, Schweiger O, Kunin WE, Global pollinator declines: trends, impacts and drivers. Trends Ecol Evol. Elsevier Ltd; 2010;25: 345–53. doi: 10.1016/j.tree.2010.01.007 20188434
-
(2010)
Trends Ecol Evol
, vol.25
, pp. 345-353
-
-
Potts, S.G.1
Biesmeijer, J.C.2
Kremen, C.3
Neumann, P.4
Schweiger, O.5
Kunin, W.E.6
-
2
-
-
84899649161
-
A national survey of managed honey bee 2012–2013 annual colony losses in the USA: results from the Bee Informed Partnership
-
Steinhauer N a, Rennich K, Wilson ME, Caron DM, Lengerich EJ, Pettis JS, et al. A national survey of managed honey bee 2012–2013 annual colony losses in the USA: results from the Bee Informed Partnership. J Apic Res. 2014;53: 1–18. doi: 10.3896/IBRA.1.53.1.01
-
(2014)
J Apic Res
, vol.53
, pp. 1-18
-
-
Steinhauer, N.1
Rennich, K.2
Wilson, M.E.3
Caron, D.M.4
Lengerich, E.J.5
Pettis, J.S.6
-
3
-
-
39049192601
-
Importance of pollinators in changing landscapes for world crops
-
Klein A-M, Vaissière BE, Cane JH, Steffan-Dewenter I, Cunningham S a, Kremen C, et al. Importance of pollinators in changing landscapes for world crops. Proc Biol Sci. 2007;274: 303–13. doi: 10.1098/rspb.2006.3721 17164193
-
(2007)
Proc Biol Sci
, vol.274
, pp. 303-313
-
-
Klein, A.-M.1
Vaissière, B.E.2
Cane, J.H.3
Steffan-Dewenter, I.4
Cunningham, S.5
Kremen, C.6
-
4
-
-
19644397575
-
Impact of an ectoparasite on the immunity and pathology of an invertebrate: evidence for host immunosuppression and viral amplification
-
Yang X, Cox-Foster DL, Impact of an ectoparasite on the immunity and pathology of an invertebrate: evidence for host immunosuppression and viral amplification. Proc Natl Acad Sci U S A. 2005;102: 7470–5. doi: 10.1073/pnas.0501860102 15897457
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 7470-7475
-
-
Yang, X.1
Cox-Foster, D.L.2
-
5
-
-
77955173413
-
The effect of diet on protein concentration, hypopharyngeal gland development and virus load in worker honey bees (Apis mellifera L.)
-
DeGrandi-Hoffman G, Chen Y, Huang E, Huang MH, The effect of diet on protein concentration, hypopharyngeal gland development and virus load in worker honey bees (Apis mellifera L.). J Insect Physiol. Elsevier Ltd; 2010;56: 1184–91. doi: 10.1016/j.jinsphys.2010.03.017 20346950
-
(2010)
J Insect Physiol
, vol.56
, pp. 1184-1191
-
-
DeGrandi-Hoffman, G.1
Chen, Y.2
Huang, E.3
Huang, M.H.4
-
6
-
-
84887424712
-
Neonicotinoid clothianidin adversely affects insect immunity and promotes replication of a viral pathogen in honey bees
-
Di Prisco G, Cavaliere V, Annoscia D, Varricchio P, Caprio E, Nazzi F, et al. Neonicotinoid clothianidin adversely affects insect immunity and promotes replication of a viral pathogen in honey bees. Proc Natl Acad Sci U S A. 2013;110: 18466–71. doi: 10.1073/pnas.1314923110 24145453
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 18466-18471
-
-
Di Prisco, G.1
Cavaliere, V.2
Annoscia, D.3
Varricchio, P.4
Caprio, E.5
Nazzi, F.6
-
7
-
-
34548304773
-
Honey bee viruses
-
Chen YP, Siede R, Honey bee viruses. Adv Virus Res. 2007;70: 33–80. doi: 10.1016/S0065-3527(07)70002-7 17765703
-
(2007)
Adv Virus Res
, vol.70
, pp. 33-80
-
-
Chen, Y.P.1
Siede, R.2
-
8
-
-
79958172988
-
Temporal analysis of the honey bee microbiome reveals four novel viruses and seasonal prevalence of known viruses, Nosema, and Crithidia
-
Runckel C, Flenniken ML, Engel JC, Ruby JG, Ganem D, Andino R, et al. Temporal analysis of the honey bee microbiome reveals four novel viruses and seasonal prevalence of known viruses, Nosema, and Crithidia. PLoS One. 2011;6: e20656. doi: 10.1371/journal.pone.0020656 21687739
-
(2011)
PLoS One
, vol.6
-
-
Runckel, C.1
Flenniken, M.L.2
Engel, J.C.3
Ruby, J.G.4
Ganem, D.5
Andino, R.6
-
10
-
-
34447325877
-
Virus infection causes specific learning deficits in honeybee foragers
-
Iqbal J, Mueller U, Virus infection causes specific learning deficits in honeybee foragers. Proc Biol Sci. 2007;274: 1517–21. doi: 10.1098/rspb.2007.0022 17439851
-
(2007)
Proc Biol Sci
, vol.274
, pp. 1517-1521
-
-
Iqbal, J.1
Mueller, U.2
-
11
-
-
58549092812
-
IAPV, a bee-affecting virus associated with Colony Collapse Disorder can be silenced by dsRNA ingestion
-
Maori E, Paldi N, Shafir S, Kalev H, Tsur E, Glick E, et al. IAPV, a bee-affecting virus associated with Colony Collapse Disorder can be silenced by dsRNA ingestion. Insect Mol Biol. 2009;18: 55–60. doi: 10.1111/j.1365-2583.2009.00847.x 19196347
-
(2009)
Insect Mol Biol
, vol.18
, pp. 55-60
-
-
Maori, E.1
Paldi, N.2
Shafir, S.3
Kalev, H.4
Tsur, E.5
Glick, E.6
-
12
-
-
84863116531
-
Predictive markers of honey bee colony collapse
-
Dainat B, Evans JD, Chen YP, Gauthier L, Neumann P, Predictive markers of honey bee colony collapse. PLoS One. 2012;7: e32151. doi: 10.1371/journal.pone.0032151 22384162
-
(2012)
PLoS One
, vol.7
-
-
Dainat, B.1
Evans, J.D.2
Chen, Y.P.3
Gauthier, L.4
Neumann, P.5
-
13
-
-
77953815337
-
The German bee monitoring project: a long term study to understand periodically high winter losses of honey bee colonies
-
Genersch E, von Der Ohe W, Kaatz H, Schroeder A, Otten C, Buchler R, et al. The German bee monitoring project: a long term study to understand periodically high winter losses of honey bee colonies. Apidologie. 2010;41: 332–352.
-
(2010)
Apidologie
, vol.41
, pp. 332-352
-
-
Genersch, E.1
von Der Ohe, W.2
Kaatz, H.3
Schroeder, A.4
Otten, C.5
Buchler, R.6
-
14
-
-
84860466454
-
Winter survival of individual honey bees and honey bee colonies depends on level of Varroa destructor infestation
-
Van Dooremalen C, Gerritsen L, Cornelissen B, van der Steen JJM, van Langevelde F, Blacquière T, Winter survival of individual honey bees and honey bee colonies depends on level of Varroa destructor infestation. PLoS One. 2012;7: e36285. doi: 10.1371/journal.pone.0036285 22558421
-
(2012)
PLoS One
, vol.7
-
-
Van Dooremalen, C.1
Gerritsen, L.2
Cornelissen, B.3
van der Steen, J.J.M.4
van Langevelde, F.5
Blacquière, T.6
-
15
-
-
73749088011
-
The Acute bee paralysis virus-Kashmir bee virus-Israeli acute paralysis virus complex
-
De Miranda JR, Cordoni G, Budge G, The Acute bee paralysis virus-Kashmir bee virus-Israeli acute paralysis virus complex. J Invertebr Pathol. Elsevier Inc.; 2010;103 Suppl: S30–47. doi: 10.1016/j.jip.2009.06.014 19909972
-
(2010)
J Invertebr Pathol
, vol.103
, pp. 30-47
-
-
De Miranda, J.R.1
Cordoni, G.2
Budge, G.3
-
16
-
-
84883541308
-
In vitro infection of pupae with Israeli acute paralysis virus suggests disturbance of transcriptional homeostasis in honey bees (Apis mellifera)
-
Boncristiani HF, Evans JD, Chen Y, Pettis J, Murphy C, Lopez DL, et al. In vitro infection of pupae with Israeli acute paralysis virus suggests disturbance of transcriptional homeostasis in honey bees (Apis mellifera). PLoS One. 2013;8: e73429. doi: 10.1371/journal.pone.0073429 24039938
-
(2013)
PLoS One
, vol.8
-
-
Boncristiani, H.F.1
Evans, J.D.2
Chen, Y.3
Pettis, J.4
Murphy, C.5
Lopez, D.L.6
-
17
-
-
35348853758
-
A metagenomic survey of microbes in honey bee colony collapse disorder
-
Cox-Foster DL, Conlan S, Holmes EC, Palacios G, Evans JD, Moran N a, et al. A metagenomic survey of microbes in honey bee colony collapse disorder. Science. 2007;318: 283–7. doi: 10.1126/science.1146498 17823314
-
(2007)
Science
, vol.318
, pp. 283-287
-
-
Cox-Foster, D.L.1
Conlan, S.2
Holmes, E.C.3
Palacios, G.4
Evans, J.D.5
Moran, N.6
-
18
-
-
84899816237
-
Dynamics of the presence of israeli acute paralysis virus in honey bee colonies with colony collapse disorder
-
Hou C, Rivkin H, Slabezki Y, Chejanovsky N, Dynamics of the presence of israeli acute paralysis virus in honey bee colonies with colony collapse disorder. Viruses. 2014;6: 2012–27. doi: 10.3390/v6052012 24800677
-
(2014)
Viruses
, vol.6
, pp. 2012-2027
-
-
Hou, C.1
Rivkin, H.2
Slabezki, Y.3
Chejanovsky, N.4
-
19
-
-
68149116255
-
Colony collapse disorder: a descriptive study
-
Vanengelsdorp D, Evans JD, Saegerman C, Mullin C, Haubruge E, Nguyen BK, et al. Colony collapse disorder: a descriptive study. PLoS One. 2009;4: e6481. doi: 10.1371/journal.pone.0006481 19649264
-
(2009)
PLoS One
, vol.4
-
-
Vanengelsdorp, D.1
Evans, J.D.2
Saegerman, C.3
Mullin, C.4
Haubruge, E.5
Nguyen, B.K.6
-
20
-
-
84865172013
-
Pathogen webs in collapsing honey bee colonies
-
Cornman RS, Tarpy DR, Chen Y, Jeffreys L, Lopez D, Pettis JS, et al. Pathogen webs in collapsing honey bee colonies. PLoS One. 2012;7: e43562. doi: 10.1371/journal.pone.0043562 22927991
-
(2012)
PLoS One
, vol.7
-
-
Cornman, R.S.1
Tarpy, D.R.2
Chen, Y.3
Jeffreys, L.4
Lopez, D.5
Pettis, J.S.6
-
21
-
-
84905385871
-
Israeli Acute Paralysis Virus: Epidemiology, Pathogenesis and Implications for Honey Bee Health
-
Chen YP, Pettis JS, Corona M, Chen WP, Li CJ, Spivak M, et al. Israeli Acute Paralysis Virus: Epidemiology, Pathogenesis and Implications for Honey Bee Health. PLoS Pathog. 2014;10: e1004261. doi: 10.1371/journal.ppat.1004261 25079600
-
(2014)
PLoS Pathog
, vol.10
-
-
Chen, Y.P.1
Pettis, J.S.2
Corona, M.3
Chen, W.P.4
Li, C.J.5
Spivak, M.6
-
22
-
-
84873566518
-
Beyond RNAi: antiviral defense strategies in Drosophila and mosquito
-
Merkling SH, van Rij RP, Beyond RNAi: antiviral defense strategies in Drosophila and mosquito. J Insect Physiol. 2013;59: 159–70. doi: 10.1016/j.jinsphys.2012.07.004 22824741
-
(2013)
J Insect Physiol
, vol.59
, pp. 159-170
-
-
Merkling, S.H.1
van Rij, R.P.2
-
23
-
-
33645979325
-
RNA interference directs innate immunity against viruses in adult Drosophila
-
Wang X, Aliyari R, Li W-X, Li H-W, Kim K, Carthew R, et al. RNA interference directs innate immunity against viruses in adult Drosophila. Science. 2006;312: 452–4. doi: 10.1126/science.1125694 16556799
-
(2006)
Science
, vol.312
, pp. 452-454
-
-
Wang, X.1
Aliyari, R.2
Li, W.-X.3
Li, H.-W.4
Kim, K.5
Carthew, R.6
-
24
-
-
84885392596
-
Non-specific dsRNA-mediated antiviral response in the honey bee
-
Flenniken ML, Andino R, Non-specific dsRNA-mediated antiviral response in the honey bee. PLoS One. 2013;8: e77263. doi: 10.1371/journal.pone.0077263 24130869
-
(2013)
PLoS One
, vol.8
-
-
Flenniken, M.L.1
Andino, R.2
-
25
-
-
78149407406
-
Prevention of Chinese sacbrood virus infection in Apis cerana using RNA interference
-
Liu X, Zhang Y, Yan X, Han R, Prevention of Chinese sacbrood virus infection in Apis cerana using RNA interference. Curr Microbiol. 2010;61: 422–8. doi: 10.1007/s00284-010-9633-2 20379718
-
(2010)
Curr Microbiol
, vol.61
, pp. 422-428
-
-
Liu, X.1
Zhang, Y.2
Yan, X.3
Han, R.4
-
26
-
-
84863728071
-
Reduction in deformed wing virus infection in larval and adult honey bees (Apis mellifera L.) by double-stranded RNA ingestion
-
Desai SD, Eu Y-J, Whyard S, Currie RW, Reduction in deformed wing virus infection in larval and adult honey bees (Apis mellifera L.) by double-stranded RNA ingestion. Insect Mol Biol. 2012;21: 446–55. doi: 10.1111/j.1365-2583.2012.01150.x 22690671
-
(2012)
Insect Mol Biol
, vol.21
, pp. 446-455
-
-
Desai, S.D.1
Eu, Y.-J.2
Whyard, S.3
Currie, R.W.4
-
27
-
-
84903463055
-
A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after Varroa destructor-mediated, or in vitro, transmission
-
Ryabov E V, Wood GR, Fannon JM, Moore JD, Bull JC, Chandler D, et al. A virulent strain of deformed wing virus (DWV) of honeybees (Apis mellifera) prevails after Varroa destructor-mediated, or in vitro, transmission. PLoS Pathog. 2014;10: e1004230. doi: 10.1371/journal.ppat.1004230 24968198
-
(2014)
PLoS Pathog
, vol.10
-
-
Ryabov, E.V.1
Wood, G.R.2
Fannon, J.M.3
Moore, J.D.4
Bull, J.C.5
Chandler, D.6
-
29
-
-
0030052140
-
Genetic and Biochemical Dissection of Transgenic RNA-Mediated Virus Resistance
-
Goodwin J, Chapman K, Swaney S, Parks TD, Wernsman E, Dougherty W, Genetic and Biochemical Dissection of Transgenic RNA-Mediated Virus Resistance. Plant Cell. 1996;8: 95–105. 8597662
-
(1996)
Plant Cell
, vol.8
, pp. 95-105
-
-
Goodwin, J.1
Chapman, K.2
Swaney, S.3
Parks, T.D.4
Wernsman, E.5
Dougherty, W.6
-
30
-
-
22844457491
-
DNA methylation and human disease
-
Robertson KD, DNA methylation and human disease. Nat Rev Genet. 2005;6: 597–610. doi: 10.1038/nrg1655 16136652
-
(2005)
Nat Rev Genet
, vol.6
, pp. 597-610
-
-
Robertson, K.D.1
-
31
-
-
84863155016
-
Epigenetic changes mediated by microRNA miR29 activate cyclooxygenase 2 and lambda-1 interferon production during viral infection
-
Fang J, Hao Q, Liu L, Li Y, Wu J, Huo X, et al. Epigenetic changes mediated by microRNA miR29 activate cyclooxygenase 2 and lambda-1 interferon production during viral infection. J Virol. 2012;86: 1010–20. doi: 10.1128/JVI.06169-11 22072783
-
(2012)
J Virol
, vol.86
, pp. 1010-1020
-
-
Fang, J.1
Hao, Q.2
Liu, L.3
Li, Y.4
Wu, J.5
Huo, X.6
-
32
-
-
77955671962
-
Tobacco mosaic virus infection results in an increase in recombination frequency and resistance to viral, bacterial, and fungal pathogens in the progeny of infected tobacco plants
-
Kathiria P, Sidler C, Golubov A, Kalischuk M, Kawchuk LM, Kovalchuk I, Tobacco mosaic virus infection results in an increase in recombination frequency and resistance to viral, bacterial, and fungal pathogens in the progeny of infected tobacco plants. Plant Physiol. 2010;153: 1859–70. doi: 10.1104/pp.110.157263 20498336
-
(2010)
Plant Physiol
, vol.153
, pp. 1859-1870
-
-
Kathiria, P.1
Sidler, C.2
Golubov, A.3
Kalischuk, M.4
Kawchuk, L.M.5
Kovalchuk, I.6
-
33
-
-
78149490635
-
IL-32: a host proinflammatory factor against influenza viral replication is upregulated by aberrant epigenetic modifications during influenza A virus infection
-
Li W, Sun W, Liu L, Yang F, Li Y, Chen Y, et al. IL-32: a host proinflammatory factor against influenza viral replication is upregulated by aberrant epigenetic modifications during influenza A virus infection. J Immunol. 2010;185: 5056–65. doi: 10.4049/jimmunol.0902667 20889550
-
(2010)
J Immunol
, vol.185
, pp. 5056-5065
-
-
Li, W.1
Sun, W.2
Liu, L.3
Yang, F.4
Li, Y.5
Chen, Y.6
-
34
-
-
84887198680
-
Infection with influenza A viruses causes changes in promoter DNA methylation of inflammatory genes
-
Mukherjee S, Vipat VC, Chakrabarti AK, Infection with influenza A viruses causes changes in promoter DNA methylation of inflammatory genes. Influenza Other Respi Viruses. 2013;1: 1–8. doi: 10.1111/irv.12127
-
(2013)
Influenza Other Respi Viruses
, vol.1
, pp. 1-8
-
-
Mukherjee, S.1
Vipat, V.C.2
Chakrabarti, A.K.3
-
35
-
-
79952788950
-
The importance of epigenetic alterations in the development of epstein-barr virus-related lymphomas
-
Takacs M, Segesdi J, Banati F, Koroknai A, Wolf H, Niller HH, et al. The importance of epigenetic alterations in the development of epstein-barr virus-related lymphomas. Mediterr J Hematol Infect Dis. 2009;1: e2009012. doi: 10.4084/MJHID.2009.012 21416002
-
(2009)
Mediterr J Hematol Infect Dis
, vol.1
-
-
Takacs, M.1
Segesdi, J.2
Banati, F.3
Koroknai, A.4
Wolf, H.5
Niller, H.H.6
-
36
-
-
79952448535
-
Interleukin-6 expression was regulated by epigenetic mechanisms in response to influenza virus infection or dsRNA treatment
-
Tang B, Zhao R, Sun Y, Zhu Y, Zhong J, Zhao G, et al. Interleukin-6 expression was regulated by epigenetic mechanisms in response to influenza virus infection or dsRNA treatment. Mol Immunol. Elsevier Ltd; 2011;48: 1001–8. doi: 10.1016/j.molimm.2011.01.003 21353307
-
(2011)
Mol Immunol
, vol.48
, pp. 1001-1008
-
-
Tang, B.1
Zhao, R.2
Sun, Y.3
Zhu, Y.4
Zhong, J.5
Zhao, G.6
-
37
-
-
0020476276
-
-
Urieli-Shoval S, Gruenbaum Y, Sedat J, Razin A, The absence of detectable methylated bases in Drosophila melanogaster DNA. 1982;146: 148–152. 6814955
-
(1982)
The absence of detectable methylated bases in Drosophila melanogaster DNA
, vol.146
, pp. 148-152
-
-
Urieli-Shoval, S.1
Gruenbaum, Y.2
Sedat, J.3
Razin, A.4
-
38
-
-
84898871225
-
Cytosine DNA Methylation Is Found in Drosophila melanogaster but Absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and Other Yeast Species
-
Capuano F, Kok R, Blom HJ, Ralser M, Cytosine DNA Methylation Is Found in Drosophila melanogaster but Absent in Saccharomyces cerevisiae, Schizosaccharomyces pombe, and Other Yeast Species. Anal Chem. 2014; 3697–3702. doi: 10.1021/ac500447w 24640988
-
(2014)
Anal Chem
, pp. 3697-3702
-
-
Capuano, F.1
Kok, R.2
Blom, H.J.3
Ralser, M.4
-
39
-
-
33750486851
-
-
Wang Y, Jorda M, Jones PL, Maleszka R, Ling X, Hugh M, et al. Functional System CpG Methylation in a Social Insect. 2006;314: 645–647. 17068262
-
(2006)
Functional System CpG Methylation in a Social Insect
, vol.314
, pp. 645-647
-
-
Wang, Y.1
Jorda, M.2
Jones, P.L.3
Maleszka, R.4
Ling, X.5
Hugh, M.6
-
40
-
-
43749098985
-
DNA methylation landscapes: provocative insights from epigenomics
-
Suzuki MM, Bird A, DNA methylation landscapes: provocative insights from epigenomics. Nat Rev Genet. 2008;9: 465–76. doi: 10.1038/nrg2341 18463664
-
(2008)
Nat Rev Genet
, vol.9
, pp. 465-476
-
-
Suzuki, M.M.1
Bird, A.2
-
41
-
-
77952355762
-
Genome-wide evolutionary analysis of eukaryotic DNA methylation
-
Zemach A, McDaniel IE, Silva P, Zilberman D, Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science. 2010;328: 916–9. doi: 10.1126/science.1186366 20395474
-
(2010)
Science
, vol.328
, pp. 916-919
-
-
Zemach, A.1
McDaniel, I.E.2
Silva, P.3
Zilberman, D.4
-
42
-
-
32344450824
-
Genomic DNA methylation: the mark and its mediators
-
Klose RJ, Bird AP, Genomic DNA methylation: the mark and its mediators. Trends Biochem Sci. 2006;31: 89–97. doi: 10.1016/j.tibs.2005.12.008 16403636
-
(2006)
Trends Biochem Sci
, vol.31
, pp. 89-97
-
-
Klose, R.J.1
Bird, A.P.2
-
43
-
-
84859465140
-
DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees
-
Foret S, Kucharski R, Pellegrini M, Feng S, Jacobsen SE, Robinson GE, et al. DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees. Proc Natl Acad Sci U S A. 2012;109: 4968–73. doi: 10.1073/pnas.1202392109 22416128
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 4968-4973
-
-
Foret, S.1
Kucharski, R.2
Pellegrini, M.3
Feng, S.4
Jacobsen, S.E.5
Robinson, G.E.6
-
44
-
-
41349085806
-
Nutritional control of reproductive status in honeybees via DNA methylation
-
Kucharski R, Maleszka J, Foret S, Maleszka R, Nutritional control of reproductive status in honeybees via DNA methylation. Science. 2008;319: 1827–30. doi: 10.1126/science.1153069 18339900
-
(2008)
Science
, vol.319
, pp. 1827-1830
-
-
Kucharski, R.1
Maleszka, J.2
Foret, S.3
Maleszka, R.4
-
45
-
-
0028940587
-
Gene number, noise reduction and biological complexity
-
Bird AP, Gene number, noise reduction and biological complexity. Trends Genet. 1995;11: 94–100. doi: 10.1016/S0168-9525(00)89009-5 7732579
-
(1995)
Trends Genet
, vol.11
, pp. 94-100
-
-
Bird, A.P.1
-
46
-
-
84876683784
-
DNA methylation and transcriptional noise
-
Huh I, Zeng J, Park T, Yi S V, DNA methylation and transcriptional noise. Epigenetics Chromatin. 2013;6: 9. doi: 10.1186/1756-8935-6-9 23618007
-
(2013)
Epigenetics Chromatin
, vol.6
, pp. 9
-
-
Huh, I.1
Zeng, J.2
Park, T.3
Yi, S.V.4
-
47
-
-
80052038784
-
cGMP modulates responses to queen mandibular pheromone in worker honey bees
-
Fussnecker BL, McKenzie AM, Grozinger CM, cGMP modulates responses to queen mandibular pheromone in worker honey bees. J Comp Physiol A Sensory, Neural, Behav Physiol. 2013;197: 939–948. doi: 10.1007/s00359-011-0654-5 cGMP
-
(2013)
J Comp Physiol A Sensory, Neural, Behav Physiol
, vol.197
, pp. 939-948
-
-
Fussnecker, B.L.1
McKenzie, A.M.2
Grozinger, C.M.3
-
48
-
-
84885410750
-
Viral infection affects sucrose responsiveness and homing ability of forager honey bees, Apis mellifera L
-
Li Z, Chen Y, Zhang S, Chen S, Li W, Yan L, et al. Viral infection affects sucrose responsiveness and homing ability of forager honey bees, Apis mellifera L. PLoS One. 2013;8: e77354. doi: 10.1371/journal.pone.0077354 24130876
-
(2013)
PLoS One
, vol.8
-
-
Li, Z.1
Chen, Y.2
Zhang, S.3
Chen, S.4
Li, W.5
Yan, L.6
-
49
-
-
78651237035
-
Large-scale field application of RNAi technology reducing Israeli acute paralysis virus disease in honey bees (Apis mellifera, Hymenoptera: Apidae)
-
Hunter W, Ellis J, Vanengelsdorp D, Hayes J, Westervelt D, Glick E, et al. Large-scale field application of RNAi technology reducing Israeli acute paralysis virus disease in honey bees (Apis mellifera, Hymenoptera: Apidae). PLoS Pathog. 2010;6: e1001160. doi: 10.1371/journal.ppat.1001160 21203478
-
(2010)
PLoS Pathog
, vol.6
-
-
Hunter, W.1
Ellis, J.2
Vanengelsdorp, D.3
Hayes, J.4
Westervelt, D.5
Glick, E.6
-
50
-
-
42049085049
-
Effects of insemination quantity on honey bee queen physiology
-
Richard F-J, Tarpy DR, Grozinger CM, Effects of insemination quantity on honey bee queen physiology. PLoS One. 2007;2: e980. doi: 10.1371/journal.pone.0000980 17912357
-
(2007)
PLoS One
, vol.2
-
-
Richard, F.-J.1
Tarpy, D.R.2
Grozinger, C.M.3
-
51
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar R, Domrachev M, Lash AE, Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 2002;30: 207–10. Available: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=99122&tool=pmcentrez&rendertype=abstract 11752295
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
52
-
-
84896690037
-
Finding the missing honey bee genes: lessons learned from a genome upgrade. BMC Genomics
-
Elsik CG, Worley KC, Bennett AK, Beye M, Camara F, Childers CP, et al. Finding the missing honey bee genes: lessons learned from a genome upgrade. BMC Genomics. BMC Genomics; 2014;15: 86. doi: 10.1186/1471-2164-15-86 24479613
-
(2014)
BMC Genomics
, vol.15
, pp. 86
-
-
Elsik, C.G.1
Worley, K.C.2
Bennett, A.K.3
Beye, M.4
Camara, F.5
Childers, C.P.6
-
53
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg SL, TopHat: discovering splice junctions with RNA-Seq. Bioinformatics. 2009;25: 1105–11. doi: 10.1093/bioinformatics/btp120 19289445
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
54
-
-
77953176036
-
A scaling normalization method for differential expression analysis of RNA-seq data
-
Robinson MD, Oshlack A, A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol. 2010;11: R25. doi: 10.1186/gb-2010-11-3-r25 20196867
-
(2010)
Genome Biol
, vol.11
, pp. 25
-
-
Robinson, M.D.1
Oshlack, A.2
-
55
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W, Differential expression analysis for sequence count data. Genome Biol. BioMed Central Ltd; 2010;11: R106. doi: 10.1186/gb-2010-11-10-r106 20979621
-
(2010)
Genome Biol
, vol.11
, pp. 106
-
-
Anders, S.1
Huber, W.2
-
56
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang DW, Sherman BT, Lempicki R a, Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 2009;4: 44–57. doi: 10.1038/nprot.2008.211 19131956
-
(2009)
Nat Protoc
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.3
-
57
-
-
79960610118
-
REVIGO summarizes and visualizes long lists of gene ontology terms
-
Supek F, Bošnjak M, Škunca N, Šmuc T, REVIGO summarizes and visualizes long lists of gene ontology terms. PLoS One. 2011;6: e21800. doi: 10.1371/journal.pone.0021800 21789182
-
(2011)
PLoS One
, vol.6
-
-
Supek, F.1
Bošnjak, M.2
Škunca, N.3
Šmuc, T.4
-
58
-
-
68949141599
-
BSMAP: whole genome bisulfite sequence MAPping program
-
Xi Y, Li W, BSMAP: whole genome bisulfite sequence MAPping program. BMC Bioinformatics. 2009;10: 232. doi: 10.1186/1471-2105-10-232 19635165
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 232
-
-
Xi, Y.1
Li, W.2
-
59
-
-
78649955848
-
The honey bee epigenomes: differential methylation of brain DNA in queens and workers
-
Lyko F, Foret S, Kucharski R, Wolf S, Falckenhayn C, Maleszka R, The honey bee epigenomes: differential methylation of brain DNA in queens and workers. PLoS Biol. 2010;8: e1000506. doi: 10.1371/journal.pbio.1000506 21072239
-
(2010)
PLoS Biol
, vol.8
-
-
Lyko, F.1
Foret, S.2
Kucharski, R.3
Wolf, S.4
Falckenhayn, C.5
Maleszka, R.6
-
60
-
-
70450217879
-
Human DNA methylomes at base resolution show widespread epigenomic differences
-
Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, et al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature. Nature Publishing Group; 2009;462: 315–22. doi: 10.1038/nature08514 19829295
-
(2009)
Nature
, vol.462
, pp. 315-322
-
-
Lister, R.1
Pelizzola, M.2
Dowen, R.H.3
Hawkins, R.D.4
Hon, G.5
Tonti-Filippini, J.6
-
61
-
-
0001677717
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B …. 1995;
-
(1995)
J R Stat Soc Ser B
-
-
Benjamini, Y.1
Hochberg, Y.2
-
62
-
-
67650488920
-
DNA methylation is widespread and associated with differential gene expression in castes of the honeybee, Apis mellifera
-
Elango N, Hunt BG, Goodisman M a D, Yi S V, DNA methylation is widespread and associated with differential gene expression in castes of the honeybee, Apis mellifera. Proc Natl Acad Sci U S A. 2009;106: 11206–11. doi: 10.1073/pnas.0900301106 19556545
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 11206-11211
-
-
Elango, N.1
Hunt, B.G.2
Goodisman, M.D.3
Yi, S.V.4
-
63
-
-
84856362508
-
DNA methylation changes elicited by social stimuli in the brains of worker honey bees
-
Lockett G a, Kucharski R, Maleszka R, DNA methylation changes elicited by social stimuli in the brains of worker honey bees. Genes Brain Behav. 2012;11: 235–42. doi: 10.1111/j.1601-183X.2011.00751.x 22098706
-
(2012)
Genes Brain Behav
, vol.11
, pp. 235-242
-
-
Lockett, G.1
Kucharski, R.2
Maleszka, R.3
-
64
-
-
84867640540
-
Transcriptional pausing controls a rapid antiviral innate immune response in Drosophila
-
Xu J, Grant G, Sabin LR, Gordesky-Gold B, Yasunaga A, Tudor M, et al. Transcriptional pausing controls a rapid antiviral innate immune response in Drosophila. Cell Host Microbe. Elsevier Inc.; 2012;12: 531–43. doi: 10.1016/j.chom.2012.08.011 23084920
-
(2012)
Cell Host Microbe
, vol.12
, pp. 531-543
-
-
Xu, J.1
Grant, G.2
Sabin, L.R.3
Gordesky-Gold, B.4
Yasunaga, A.5
Tudor, M.6
-
65
-
-
84888001376
-
Insect antiviral innate immunity: pathways, effectors, and connections
-
Kingsolver MB, Huang Z, Hardy RW, Insect antiviral innate immunity: pathways, effectors, and connections. J Mol Biol. Elsevier Ltd; 2013;425: 4921–36. doi: 10.1016/j.jmb.2013.10.006 24120681
-
(2013)
J Mol Biol
, vol.425
, pp. 4921-4936
-
-
Kingsolver, M.B.1
Huang, Z.2
Hardy, R.W.3
-
66
-
-
77951227183
-
RNA interference modulates replication of dengue virus in Drosophila melanogaster cells
-
Mukherjee S, Hanley K a, RNA interference modulates replication of dengue virus in Drosophila melanogaster cells. BMC Microbiol. 2010;10: 127. doi: 10.1186/1471-2180-10-127 20420715
-
(2010)
BMC Microbiol
, vol.10
, pp. 127
-
-
Mukherjee, S.1
Hanley, K.2
-
67
-
-
84923763720
-
The immune response of the small interfering RNA pathway in the defense against bee viruses
-
Niu J, Meeus I, Cappelle K, Piot N, Smagghe G, The immune response of the small interfering RNA pathway in the defense against bee viruses. Curr Opin Insect Sci. Elsevier Inc; 2014; 22–27. doi: 10.1016/j.cois.2014.09.014 25401084
-
(2014)
Curr Opin Insect Sci
, pp. 22-27
-
-
Niu, J.1
Meeus, I.2
Cappelle, K.3
Piot, N.4
Smagghe, G.5
-
68
-
-
33750471967
-
Immune pathways and defence mechanisms in honey bees Apis mellifera
-
Evans JD, Aronstein K, Chen YP, Hetru C, Imler J-L, Jiang H, et al. Immune pathways and defence mechanisms in honey bees Apis mellifera. Insect Mol Biol. 2006;15: 645–56. doi: 10.1111/j.1365-2583.2006.00682.x 17069638
-
(2006)
Insect Mol Biol
, vol.15
, pp. 645-656
-
-
Evans, J.D.1
Aronstein, K.2
Chen, Y.P.3
Hetru, C.4
Imler, J.-L.5
Jiang, H.6
-
69
-
-
84867422557
-
Effects of immunostimulation on social behavior, chemical communication and genome-wide gene expression in honey bee workers (Apis mellifera)
-
Richard F-J, Holt HL, Grozinger CM, Effects of immunostimulation on social behavior, chemical communication and genome-wide gene expression in honey bee workers (Apis mellifera). BMC Genomics. BMC Genomics; 2012;13: 558. doi: 10.1186/1471-2164-13-558 23072398
-
(2012)
BMC Genomics
, vol.13
, pp. 558
-
-
Richard, F.-J.1
Holt, H.L.2
Grozinger, C.M.3
-
70
-
-
84887736957
-
Chronic parasitization by Nosema microsporidia causes global expression changes in core nutritional, metabolic and behavioral pathways in honey bee workers (Apis mellifera)
-
Holt HL, Aronstein K a, Grozinger CM, Chronic parasitization by Nosema microsporidia causes global expression changes in core nutritional, metabolic and behavioral pathways in honey bee workers (Apis mellifera). BMC Genomics. 2013;14: 799. doi: 10.1186/1471-2164-14-799 24245482
-
(2013)
BMC Genomics
, vol.14
, pp. 799
-
-
Holt, H.L.1
Aronstein, K.2
Grozinger, C.M.3
-
71
-
-
84864659030
-
The evolution of invertebrate gene body methylation
-
Sarda S, Zeng J, Hunt BG, Yi S V, The evolution of invertebrate gene body methylation. Mol Biol Evol. 2012;29: 1907–16. doi: 10.1093/molbev/mss062 22328716
-
(2012)
Mol Biol Evol
, vol.29
, pp. 1907-1916
-
-
Sarda, S.1
Zeng, J.2
Hunt, B.G.3
Yi, S.V.4
-
72
-
-
67349164022
-
In silico prediction of two classes of honeybee genes with CpG deficiency or CpG enrichment and sorting according to gene ontology classes
-
Wang Y, Leung FCC, In silico prediction of two classes of honeybee genes with CpG deficiency or CpG enrichment and sorting according to gene ontology classes. J Mol Evol. 2009;68: 700–5. doi: 10.1007/s00239-009-9244-3 19466376
-
(2009)
J Mol Evol
, vol.68
, pp. 700-705
-
-
Wang, Y.1
Leung, F.C.C.2
-
73
-
-
70449715419
-
Epigenetic regulation of the honey bee transcriptome: unravelling the nature of methylated genes
-
Foret S, Kucharski R, Pittelkow Y, Lockett G a, Maleszka R, Epigenetic regulation of the honey bee transcriptome: unravelling the nature of methylated genes. BMC Genomics. 2009;10: 472. doi: 10.1186/1471-2164-10-472 19828049
-
(2009)
BMC Genomics
, vol.10
, pp. 472
-
-
Foret, S.1
Kucharski, R.2
Pittelkow, Y.3
Lockett, G.4
Maleszka, R.5
-
74
-
-
84887312009
-
Function and evolution of DNA methylation in Nasonia vitripennis
-
Wang X, Wheeler D, Avery A, Rago A, Choi J-H, Colbourne JK, et al. Function and evolution of DNA methylation in Nasonia vitripennis. PLoS Genet. 2013;9: e1003872. doi: 10.1371/journal.pgen.1003872 24130511
-
(2013)
PLoS Genet
, vol.9
-
-
Wang, X.1
Wheeler, D.2
Avery, A.3
Rago, A.4
Choi, J.-H.5
Colbourne, J.K.6
-
75
-
-
79952200574
-
DNA methylation and genome evolution in honeybee: gene length, expression, functional enrichment covary with the evolutionary signature of DNA methylation
-
Zeng J, Yi S V, DNA methylation and genome evolution in honeybee: gene length, expression, functional enrichment covary with the evolutionary signature of DNA methylation. Genome Biol Evol. 2010;2: 770–80. doi: 10.1093/gbe/evq060 20924039
-
(2010)
Genome Biol Evol
, vol.2
, pp. 770-780
-
-
Zeng, J.1
Yi, S.V.2
-
76
-
-
33847304609
-
Gene body-specific methylation on the active X chromosome
-
Hellman A, Chess A, Gene body-specific methylation on the active X chromosome. Science. 2007;315: 1141–3. doi: 10.1126/science.1136352 17322062
-
(2007)
Science
, vol.315
, pp. 1141-1143
-
-
Hellman, A.1
Chess, A.2
-
77
-
-
84863986133
-
Functions of DNA methylation: islands, start sites, gene bodies and beyond
-
Jones P a, Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nat Rev Genet. Nature Publishing Group; 2012;13: 484–92. doi: 10.1038/nrg3230 22641018
-
(2012)
Nat Rev Genet
, vol.13
, pp. 484-492
-
-
Jones, P.1
-
78
-
-
0033551151
-
Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis
-
Duret L, Mouchiroud D, Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis. Proc Natl Acad Sci U S A. 1999;96: 4482–7. Available: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=16358&tool=pmcentrez&rendertype=abstract 10200288
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 4482-4487
-
-
Duret, L.1
Mouchiroud, D.2
-
79
-
-
83455162761
-
What are the determinants of gene expression levels and breadths in the human genome?
-
Park J, Xu K, Park T, Yi S V, What are the determinants of gene expression levels and breadths in the human genome? Hum Mol Genet. 2012;21: 46–56. doi: 10.1093/hmg/ddr436 21945885
-
(2012)
Hum Mol Genet
, vol.21
, pp. 46-56
-
-
Park, J.1
Xu, K.2
Park, T.3
Yi, S.V.4
-
80
-
-
77953316920
-
Activation of the inositol (1,4,5)-triphosphate calcium gate receptor is required for HIV-1 Gag release
-
Ehrlich LS, Medina GN, Khan MB, Powell MD, Mikoshiba K, Carter C a, Activation of the inositol (1,4,5)-triphosphate calcium gate receptor is required for HIV-1 Gag release. J Virol. 2010;84: 6438–51. doi: 10.1128/JVI.01588-09 20427533
-
(2010)
J Virol
, vol.84
, pp. 6438-6451
-
-
Ehrlich, L.S.1
Medina, G.N.2
Khan, M.B.3
Powell, M.D.4
Mikoshiba, K.5
Carter, C.6
-
81
-
-
81355160349
-
Phosphatidylinositol-3-kinase (PI3K) is activated by influenza virus vRNA via the pathogen pattern receptor Rig-I to promote efficient type I interferon production
-
Hrincius ER, Dierkes R, Anhlan D, Wixler V, Ludwig S, Ehrhardt C, Phosphatidylinositol-3-kinase (PI3K) is activated by influenza virus vRNA via the pathogen pattern receptor Rig-I to promote efficient type I interferon production. Cell Microbiol. 2011;13: 1907–19. doi: 10.1111/j.1462-5822.2011.01680.x 21899695
-
(2011)
Cell Microbiol
, vol.13
, pp. 1907-1919
-
-
Hrincius, E.R.1
Dierkes, R.2
Anhlan, D.3
Wixler, V.4
Ludwig, S.5
Ehrhardt, C.6
-
82
-
-
84871280686
-
Transient activation of the PI3K-AKT pathway by hepatitis C virus to enhance viral entry
-
Liu Z, Tian Y, Machida K, Lai MMC, Luo G, Foung SKH, et al. Transient activation of the PI3K-AKT pathway by hepatitis C virus to enhance viral entry. J Biol Chem. 2012;287: 41922–30. doi: 10.1074/jbc.M112.414789 23095753
-
(2012)
J Biol Chem
, vol.287
, pp. 41922-41930
-
-
Liu, Z.1
Tian, Y.2
Machida, K.3
Lai, M.M.C.4
Luo, G.5
Foung, S.K.H.6
-
83
-
-
84860376937
-
Protein kinase C-delta regulates HIV-1 replication at an early post-entry step in macrophages
-
Contreras X, Mzoughi O, Gaston F, Peterlin MB, Bahraoui E, Protein kinase C-delta regulates HIV-1 replication at an early post-entry step in macrophages. Retrovirology. BioMed Central Ltd; 2012;9: 37. doi: 10.1186/1742-4690-9-37 22554282
-
(2012)
Retrovirology
, vol.9
, pp. 37
-
-
Contreras, X.1
Mzoughi, O.2
Gaston, F.3
Peterlin, M.B.4
Bahraoui, E.5
-
84
-
-
69049119032
-
HIV-1 evades virus-specific IgG2 and IgA responses by targeting systemic and intestinal B cells via long-range intercellular conduits
-
Xu W, Santini P a, Sullivan JS, He B, Shan M, Ball SC, et al. HIV-1 evades virus-specific IgG2 and IgA responses by targeting systemic and intestinal B cells via long-range intercellular conduits. Nat Immunol. Nature Publishing Group; 2009;10: 1008–17. doi: 10.1038/ni.1753 19648924
-
(2009)
Nat Immunol
, vol.10
, pp. 1008-1017
-
-
Xu, W.1
Santini, P.2
Sullivan, J.S.3
He, B.4
Shan, M.5
Ball, S.C.6
-
85
-
-
0032526693
-
The molecular basis of viral oncolysis: usurpation of the Ras signaling pathway by reovirus
-
Strong JE, Coffey MC, Tang D, Sabinin P, Lee PW, The molecular basis of viral oncolysis: usurpation of the Ras signaling pathway by reovirus. EMBO J. 1998;17: 3351–62. doi: 10.1093/emboj/17.12.3351 9628872
-
(1998)
EMBO J
, vol.17
, pp. 3351-3362
-
-
Strong, J.E.1
Coffey, M.C.2
Tang, D.3
Sabinin, P.4
Lee, P.W.5
-
86
-
-
77955230330
-
Involvement of DNA methylation in memory processing in the honey bee
-
Lockett G a, Helliwell P, Maleszka R, Involvement of DNA methylation in memory processing in the honey bee. Neuroreport. 2010;21: 812–6. doi: 10.1097/WNR.0b013e32833ce5be 20571459
-
(2010)
Neuroreport
, vol.21
, pp. 812-816
-
-
Lockett, G.1
Helliwell, P.2
Maleszka, R.3
-
87
-
-
81855206226
-
Comparative analyses of DNA methylation and sequence evolution using Nasonia genomes
-
Park J, Peng Z, Zeng J, Elango N, Park T, Wheeler D, et al. Comparative analyses of DNA methylation and sequence evolution using Nasonia genomes. Mol Biol Evol. 2011;28: 3345–54. doi: 10.1093/molbev/msr168 21693438
-
(2011)
Mol Biol Evol
, vol.28
, pp. 3345-3354
-
-
Park, J.1
Peng, Z.2
Zeng, J.3
Elango, N.4
Park, T.5
Wheeler, D.6
-
88
-
-
80455176999
-
CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing
-
Shukla S, Kavak E, Gregory M, Imashimizu M, Shutinoski B, Kashlev M, et al. CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing. Nature. Nature Publishing Group; 2011;479: 74–9. doi: 10.1038/nature10442 21964334
-
(2011)
Nature
, vol.479
, pp. 74-79
-
-
Shukla, S.1
Kavak, E.2
Gregory, M.3
Imashimizu, M.4
Shutinoski, B.5
Kashlev, M.6
-
89
-
-
84866736392
-
Reversible switching between epigenetic states in honeybee behavioral subcastes
-
Herb BR, Wolschin F, Hansen KD, Aryee MJ, Langmead B, Irizarry R, et al. Reversible switching between epigenetic states in honeybee behavioral subcastes. Nat Neurosci. Nature Publishing Group; 2012;15: 1371–3. doi: 10.1038/nn.3218 22983211
-
(2012)
Nat Neurosci
, vol.15
, pp. 1371-1373
-
-
Herb, B.R.1
Wolschin, F.2
Hansen, K.D.3
Aryee, M.J.4
Langmead, B.5
Irizarry, R.6
-
90
-
-
84926447949
-
targeted functional genetic analyses in cultured Drosophila cells highlight the role of glycerophospholipid metabolism in Flock House virus RNA replication
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Castorena KM, Stapleford KA, Miller DJ. targeted functional genetic analyses in cultured Drosophila cells highlight the role of glycerophospholipid metabolism in Flock House virus RNA replication. 2010;
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(2010)
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Castorena, K.M.1
Stapleford, K.A.2
Miller, D.J.3
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