Versatile sample environments and automation for biological solution X-ray scattering experiments at the P12 beamline (PETRA III, DESY)

Journal of Applied Crystallography

Volumn 48, Issue , 2015, Pages 431-443

  Blanchet, Clement E ^a   Spilotros, Alessandro ^a   Schwemmer, Frank ^b   Graewert, Melissa A ^a   Kikhney, Alexey ^a   Jeffries, Cy M ^a   Franke, Daniel ^a   Mark, Daniel ^b   Zengerle, Roland ^b   Cipriani, Florent ^c   Fiedler, Stefan ^a   Roessle, Manfred ^a   Svergun, Dmitri I ^a  

^a EUROPEAN MOLECULAR BIOLOGY LABORATORY   (Germany)

^b UNIVERSITY OF FREIBURG   (Germany)

^c EUROPEAN MOLECULAR BIOLOGY LABORATORY   (France)

Author keywords

automated hardware and software systems; biological small angle X ray scattering; high brilliance P12 synchrotron beamline

Indexed keywords

AIR CLEANERS; AIR PURIFICATION; AUTOMATION; DIGITAL STORAGE; MACROMOLECULES; SCREENING; THROUGHPUT;

BIOLOGICAL SMALL-ANGLE X-RAY SCATTERINGS; BIOLOGICAL SOLUTIONS; DATA NORMALIZATION; HARDWARE AND SOFTWARE; HIGH THROUGHPUT SCREENING; HIGH-THROUGHPUT ANALYSIS; SCREENING EXPERIMENTS; SYNCHROTRON BEAMLINES;

X RAY SCATTERING;

EID: 84926366641     PISSN: 00218898     EISSN: 16005767     Source Type: Journal    
DOI: 10.1107/S160057671500254X     Document Type: Article

References (54)

1. Bartkiewicz, P., Duval, P. (2007). Meas. Sci. Technol. 18, 2379-2386.
2. Blanchet, C. E., Hermes, C., Svergun, D. I., Fiedler, S. (2015). J. Synchrotron Rad. 22, 461-464.
3. Blanchet, C. E., Svergun, D. I. (2013). Annu. Rev. Phys. Chem. 64, 37-54.
4. Blanchet, C. E., Zozulya, A. V., Kikhney, A. G., Franke, D., Konarev, P. V., Shang, W., Klaering, R., Robrahn, B., Hermes, C., Cipriani, F., Svergun, D. I., Roessle, M. (2012). J. Appl. Cryst. 45, 489-495.
5. Callender, R., Dyer, R. B. (2006). Chem. Rev. 106, 3031-3042.
6. Chatani, E., Hayashi, R., Moriyama, H., Ueki, T. (2002). Protein Sci. 11, 72-81.
7. Cho, H., Kim, H. Y., Kang, J. Y., Kim, T. S. (2007). J. Colloid Interface Sci. 306, 379-385.
8. Chu, B., Hsiao, B. S. (2001). Chem. Rev. 101, 1727-1762.
9. Classen, S., Rodic, I., Holton, J., Hura, G. L., Hammel, M., Tainer, J. A. (2010). J. Synchrotron Rad. 17, 774-781.
10. David, G., Pérez, J. (2009). J. Appl. Cryst. 42, 892-900.
11. Dubuisson, J.-M., Decamps, T., Vachette, P. (1997). J. Appl. Cryst. 30, 49-54.
12. Ducreé, J., Haeberle, S., Lutz, S., Pausch, S., von Stetten, F., Zengerle, R. (2007). J. Micromech. Microeng. 17, S103-S115.
13. Ellis, P. J., Cohen, A. E., Soltis, S. M. (2003). J. Synchrotron Rad. 10, 287-288.
14. Fernández, M., Keyrilä inen, J., Serimaa, R., Torkkeli, M., Karjalainen-Lindsberg, M. L., Tenhunen, M., Thomlinson, W., Urban, V., Suortti, P. (2002). Phys. Med. Biol. 47, 577-592.
15. Fislage, M., Brosens, E., Deyaert, E., Spilotros, A., Pardon, E., Loris, R., Steyaert, J., Garcia-Pino, A., Versionées, W. (2014). Nucleic Acids Res. pp. 1-15.
16. Franke, D., Kikhney, A. G., Svergun, D. I. (2012). Nucl. Instrum. Methods Phys. Res. Sect. A, 689, 52-59.
17. Franke, D., Svergun, D. I. (2009). J. Appl. Cryst. 42, 342-346.
18. Fratzl, P. (2003). J. Appl. Cryst. 36, 397-404.
19. Glatter, O., Kratky, O. (1982). Small-Angle X-ray Scattering. London: Academic Press.
20. Graceffa, R., Nobrega, R. P., Barrea, R. A., Kathuria, S. V., Chakravarthy, S., Bilsel, O., Irving, T. C. (2013). J. Synchrotron Rad. 20, 820-825.
21. Graewert, M. A., Svergun, D. I. (2013). Curr. Opin. Struct. Biol. 23, 748-754.
22. Guinier, A., Fournet, G. (1955). J. Polym. Sci. 1, 268.
23. Henrich, B., Bergamaschi, A., Broennimann, C., Dinapoli, R., Eikenberry, E. F., Johnson, I., Kobas, M., Kraft, P., Mozzanica, A., Schmitt, B. (2009). Nucl. Instrum. Methods Phys. Res. Sect. A, 607, 247-249.
24. Jeffries, C. M., Graewert, M. A., Svergun, D. I., Blanchet, C. E. (2015). J. Synchrotron Rad. 22, 273-279.
25. Kathuria, S. V., Guo, L., Graceffa, R., Barrea, R., Nobrega, R. P., Matthews, C. R., Irving, T. C., Bilsel, O. (2011). Biopolymers, 95, 550-558.
26. Kirby, N. M., Mudie, S. T., Hawley, A. M., Cookson, D. J., Mertens, H. D. T., Cowieson, N., Samardzic-Boban, V. (2013). J. Appl. Cryst. 46, 1670-1680.
27. Kozin, M. B., Svergun, D. I. (2001). J. Appl. Cryst. 34, 33-41.
28. Labrador, A., Cerenius, Y., Svensson, C., Theodor, K., Plivelic, T. (2013). J. Phys. Conf. Ser. 425, 72019.
29. Lafleur, J. P., Snakenborg, D., Nielsen, S. S., Møller, M., Toft, K. N., Menzel, A., Jacobsen, J. K., Vestergaard, B., Arleth, L., Kutter, J. P. (2011). J. Appl. Cryst. 44, 1090-1099.
30. Li, Y., Beck, R., Huang, T., Choi, M. C., Divinagracia, M. (2008). J. Appl. Cryst. 41, 1134-1139.
31. Lindorff-Larsen, K., Piana, S., Dror, R. O., Shaw, D. E. (2011). Science, 334, 517-520.
32. Lipfert, J., Doniach, S. (2007). Annu. Rev. Biophys. Biomol. Struct. 36, 307-327.
33. Lipfert, J., Millett, I. S., Seifert, S., Doniach, S. (2006). Rev. Sci. Instrum. 77, 046108.
34. Martel, A., Burghammer, M., Davies, R., DiCola, E., Panine, P., Salmon, J. B., Riekel, C. (2008). Biomicrofluidics, 2, 024104.
35. Martin, H. P., Brooks, N. J., Seddon, J. M., Terrill, N. J., Luckham, P. F., Kowalski, A. J., Cabral, J. T. (2010). J. Phys. Conf. Ser. 247, 012050.
36. Mathew, E., Mirza, A., Menhart, N. (2004). J. Synchrotron Rad. 11, 314-318.
37. Nielsen, S. S., Møller, M., Gillilan, R. E. (2012). J. Appl. Cryst. 45, 213-223.
38. Nö lting B. (2005). Protein Folding Kinetics: Biophysical Methods. Berlin, Heidelberg: Springer
39. Pace, C. N., Laurents, D. V., Thomson, J. A. (1990). Biochemistry. 29. 2564-2572.
40. Paris, O., Zizak, I., Lichtenegger, H., Roschger, P., Klaushofer, K., Fratzl, P. (2000). Cell. Mol. Biol. 46, 993-1004.
41. Pernot, P. et al. (2013). J. Synchrotron Rad. 20, 660-664.
42. Roessle, M. W., Klaering, R., Ristau, U., Robrahn, B., Jahn, D., Gehrmann, T., Konarev, P., Round, A., Fiedler, S., Hermes, C., Svergun, D. (2007). J. Appl. Cryst. 40, s190-s194.
43. Round, A., Brown, E., Marcellin, R., Kapp, U., Westfall, C. S., Jez, J. M., Zubieta, C. (2013). Acta Cryst. D69, 2072-2080.
44. Round, A., Felisaz, F., Fodinger, L., Gobbo, A., Huet, J., Villard, C., Blanchet, C. E., Pernot, P., McSweeney, S., Roessle, M., Svergun, D. I., Cipriani, F. (2015). Acta Cryst. D71, 67-75.
45. Round, A. R., Franke, D., Moritz, S., Huchler, R., Fritsche, M., Malthan, D., Klaering, R., Svergun, D. I., Roessle, M. (2008). J. Appl. Cryst. 41, 913-917.
46. Sosnick, T. R., Trewhella, J. (1992). Biochemistry, 31, 8329-8335.
47. Spilotros, A., Svergun, D. I. (2014). Encyclopedia of Analytical Chemistry, edited by R.A.Meyers. Chichester: JohnWiley and Sons.
48. Stein, P. E., Leslie, A. G., Finch, J. T., Carrell, R. W. (1991). J. Mol. Biol. 221, 941-959.
49. Stuhrmann, H. (1980). Synchrotron Radiation Research, edited by H. Winick, S. Doniach, pp. 513-531. New York: Plenum Press.
50. Svergun, D. I. (1999). Biophys. J. 76, 2879-2886.
51. Svergun, D., Barberato, C., Koch, M. H. J. (1995). J. Appl. Cryst. 28, 768-773.
52. Trebbin, M., Steinhauser, D., Perlich, J., Buffet, A., Roth, S. V., Zimmermann, W., Thiele, J., Fö rster, S. (2013). Proc. Natl Acad. Sci. USA, 110, 6706-6711.
53. Vestergaard, B., Groenning, M., Roessle, M., Kastrup, J. S., Van De Weert, M., Flink, J. M., Frokjaer, S., Gajhede, M., Svergun, D. I. (2007). PLoS Biol. 5, 1089-1097
54. Volkov, V. V., Svergun, D. I. (2003). J. Appl. Cryst. 36, 860-864.