Limiting radiation damage for high-brilliance biological solution scattering: Practical experience at the EMBL P12 beamline PETRAIII

Journal of Synchrotron Radiation

Volumn 22, Issue 2, 2015, Pages 273-279

  Jeffries, Cy M ^a   Graewert, Melissa A ^a   Svergun, Dmitri I ^a   Blanchet, Clément E ^a  

^a DESY   (Germany)

Author keywords

protein; radiation damage; SAXS Includes papers presented at the 8th International Workshop on X ray Radiation Damage to Biological Crystalline Samples; synchrotron small angle scattering

Indexed keywords

DATA ACQUISITION; DATA HANDLING; DIGITAL STORAGE; MACROMOLECULES; PROTEINS; RADIATION DAMAGE; X RAY SCATTERING;

BIOLOGICAL MACROMOLECULE; BIOLOGICAL SOLUTIONS; DATA ACQUISITION PROTOCOL; INTERNATIONAL WORKSHOPS; PRACTICAL EXPERIENCE; SMALL ANGLE SCATTERING; STRUCTURAL CHARACTERIZATION; SYNCHROTRON SMALL-ANGLE X-RAY SCATTERINGS;

DAMAGE DETECTION;

MACROMOLECULE; PROTEIN; SOLUTION AND SOLUBILITY;

ANIMAL; CHEMISTRY; MACROMOLECULE; RADIATION DOSE; RADIATION INJURIES; RADIATION RESPONSE; SENSITIVITY AND SPECIFICITY; SMALL ANGLE SCATTERING; SOLUTION AND SOLUBILITY; SYNCHROTRON;

ANIMALS; MACROMOLECULAR SUBSTANCES; PROTEINS; RADIATION DOSAGE; RADIATION INJURIES; SCATTERING, SMALL ANGLE; SENSITIVITY AND SPECIFICITY; SOLUTIONS; SYNCHROTRONS;

EID: 84924228248     PISSN: 09090495     EISSN: 16005775     Source Type: Journal    
DOI: 10.1107/S1600577515000375     Document Type: Conference Paper

References (26)

1. Berger, M. J., Hubbell, J. H., Seltzer, S. M., Chang, J., Coursey, J. S., Sukumar, R., Zucker, D. S. & Olsen, K. (2010). XCOM: Photon Cross Section Database (Version 1.5). National Institute of Standards and Technology, Gaithersburg, MD, USA. (Available Online: http://physics.nist.gov/xcom.)
2. Blanchet, C. E., Zozulya, A. V., Kikhney, A. G., Franke, D., Konarev, P. V., Shang, W., Klaering, R., Robrahn, B., Hermes, C., Cipriani, F., Svergun, D. I. & Roessle, M. (2012). J. Appl. Cryst. 45, 489-495
3. Fischetti, R. F., Rodi, D. J., Mirza, A., Irving, T. C., Kondrashkina, E. & Makowski, L. (2003). J. Synchrotron Rad. 10, 398-404
4. Franke, D., Kikhney, A. G. & Svergun, D. I. (2012). Nucl. Instrum. Methods Phys. Res. A, 689, 52-59
5. Garrison, W. M. (1987). Chem. Rev. 87, 381-398
6. Gasteiger, E., Hoogland, C., Gattiker, A., Duvaud, S., Wilkins, M. R., Appel, R. D. & Bairoch, A. (2005). Protein Identification and Analysis Tools on the ExPASy Server, in The Proteomics Protocols Handbook, edited by J. M. Walker, pp. 571-607. Totowa: Humana Press
7. Graceffa, R., Nobrega, R. P., Barrea, R. A., Kathuria, S. V., Chakravarthy, S., Bilsel, O. & Irving, T. C. (2013). J. Synchrotron Rad. 20, 820-825
8. Grant, T. D., Luft, J. R., Wolfley, J. R., Tsuruta, H., Martel, A., Montelione, G. T. & Snell, E. H. (2011). Biopolymers, 95, 517-530
9. Grishaev, A. (2012). Curr. Protoc. Protein. Sci. 70, 17.14.1-17.14.18
10. Guinier, A. (1939). Ann. Phys. (Paris), 12, 161-237
11. Henke, B. L., Gullikson, E. M. & Davis, J. C. (1993). At. Data Nucl. Data Tables, 54, 181-342
12. Hura, G. L., Menon, A. L., Hammel, M., Rambo, R. P., Poole, F. L. II, Tsutakawa, S. E., Jenney, F. E. Jr, Classen, S., Frankel, K. A., Hopkins, R. C., Yang, S., Scott, J. W., Dillard, B. D., Adams, M. W. W. & Tainer, J. A. (2009). Nat. Methods, 6, 606-612
13. Jacques, D. A. & Trewhella, J. (2010). Protein Sci. 19, 642-657
14. Kuwamoto, S., Akiyama, S. & Fujisawa, T. (2004). J. Synchrotron Rad. 11, 462-468
15. Maleknia, S. D., Ralston, C. Y., Brenowitz, M. D., Downard, K. M. & Chance, M. R. (2001). Anal. Biochem. 289, 103-115
16. Martel, A., Liu, P., Weiss, T. M., Niebuhr, M. & Tsuruta, H. (2012). J. Synchrotron Rad. 19, 431-434
17. Mathew, E., Mirza, A. & Menhart, N. (2004). J. Synchrotron Rad. 11, 314-318
18. Meisburger, S. P., Warkentin, M., Chen, H. M., Hopkins, J. B., Gillilan, R. E., Pollack, L. & Thorne, R. E. (2013). Biophys. J. 104, 227-236
19. Mylonas, E. & Svergun, D. I. (2007). J. Appl. Cryst. 40, s245-s249
20. Nielsen, S. S., Møller, M. & Gillilan, R. E. (2012). J. Appl. Cryst. 45, 213-223
21. Pernot, P., Theveneau, P., Giraud, T., Fernandes, R. N., Nurizzo, D., Spruce, D., Surr, J., McSweeney, S., Round, A., Felisaz, F., Foedinger, L., Gobbo, A., Huet, J., Villard, C. & Cipriani, F. (2010). J. Phys. Conf. Ser. 247, 012009
22. Petoukhov, M. V., Franke, D., Shkumatov, A. V., Tria, G., Kikhney, A. G., Gajda, M., Gorba, C., Mertens, H. D. T., Konarev, P. V. & Svergun, D. I. (2012). J. Appl. Cryst. 45, 342-350
23. Petoukhov, M. V., Konarev, P. V., Kikhney, A. G. & Svergun, D. I. (2007). J. Appl. Cryst. 40, s223-s228
24. Skou, S., Gillilan, R. E. & Ando, N. (2014). Nat. Protoc. 9, 1727-1739
25. Vagenende, V., Yap, M. G. S. & Trout, B. L. (2009). Biochemistry, 48, 11084-11096
26. Whitten, A. E., Cai, S. & Trewhella, J. (2008). J. Appl. Cryst. 41, 222-226