-
1
-
-
77649282315
-
Present and future therapeutic strategies for melioidosis and glanders
-
Estes DM, Dow SW, Schweizer HP, Torres AG, (2010) Present and future therapeutic strategies for melioidosis and glanders. Expert Rev Anti Infect Ther 8: 325–338. doi: 10.1586/eri.10.4 20192686
-
(2010)
Expert Rev Anti Infect Ther
, vol.8
, pp. 325-338
-
-
Estes, D.M.1
Dow, S.W.2
Schweizer, H.P.3
Torres, A.G.4
-
2
-
-
84866128876
-
Strategies for intracellular survival of Burkholderia pseudomallei
-
Allwood EM, Devenish RJ, Prescott M, Adler B, Boyce JD, (2011) Strategies for intracellular survival of Burkholderia pseudomallei. Front Microbiol 2: 170. doi: 10.3389/fmicb.2011.00170 22007185
-
(2011)
Front Microbiol
, vol.2
, pp. 170
-
-
Allwood, E.M.1
Devenish, R.J.2
Prescott, M.3
Adler, B.4
Boyce, J.D.5
-
3
-
-
77957930925
-
Molecular insights into Burkholderia pseudomallei and Burkholderia mallei pathogenesis
-
Galyov EE, Brett PJ, DeShazer D, (2010) Molecular insights into Burkholderia pseudomallei and Burkholderia mallei pathogenesis. Annu Rev Microbiol 64: 495–517. doi: 10.1146/annurev.micro.112408.134030 20528691
-
(2010)
Annu Rev Microbiol
, vol.64
, pp. 495-517
-
-
Galyov, E.E.1
Brett, P.J.2
DeShazer, D.3
-
4
-
-
84875541470
-
Autotransporters and their role in the virulence of Burkholderia pseudomallei and Burkholderia mallei
-
Lazar Adler NR, Stevens JM, Stevens MP, Galyov EE, (2011) Autotransporters and their role in the virulence of Burkholderia pseudomallei and Burkholderia mallei. Front Microbiol 2: 151. doi: 10.3389/fmicb.2011.00151 21811486
-
(2011)
Front Microbiol
, vol.2
, pp. 151
-
-
Lazar Adler, N.R.1
Stevens, J.M.2
Stevens, M.P.3
Galyov, E.E.4
-
5
-
-
77955709379
-
Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements
-
Losada L, Ronning CM, DeShazer D, Woods D, Fedorova N, et al. (2010) Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements. Genome Biol Evol 2: 102–116. doi: 10.1093/gbe/evq003 20333227
-
(2010)
Genome Biol Evol
, vol.2
, pp. 102-116
-
-
Losada, L.1
Ronning, C.M.2
DeShazer, D.3
Woods, D.4
Fedorova, N.5
-
6
-
-
4644311317
-
Structural flexibility in the Burkholderia mallei genome
-
Nierman WC, DeShazer D, Kim HS, Tettelin H, Nelson KE, et al. (2004) Structural flexibility in the Burkholderia mallei genome. Proc Natl Acad Sci U S A 101: 14246–14251. doi: 10.1073/pnas.0403306101 15377793
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 14246-14251
-
-
Nierman, W.C.1
DeShazer, D.2
Kim, H.S.3
Tettelin, H.4
Nelson, K.E.5
-
7
-
-
34249980077
-
Type VI secretion is a major virulence determinant in Burkholderia mallei
-
Schell MA, Ulrich RL, Ribot WJ, Brueggemann EE, Hines HB, et al. (2007) Type VI secretion is a major virulence determinant in Burkholderia mallei. Mol Microbiol 64: 1466–1485. doi: 10.1111/j.1365-2958.2007.05734.x 17555434
-
(2007)
Mol Microbiol
, vol.64
, pp. 1466-1485
-
-
Schell, M.A.1
Ulrich, R.L.2
Ribot, W.J.3
Brueggemann, E.E.4
Hines, H.B.5
-
8
-
-
84887033405
-
Novel Burkholderia mallei virulence factors linked to specific host-pathogen protein interactions
-
Memišević V, Zavaljevski N, Pieper R, Rajagopala SV, Kwon K, et al. (2013) Novel Burkholderia mallei virulence factors linked to specific host-pathogen protein interactions. Mol Cell Proteomics 12: 3036–3051. doi: 10.1074/mcp.M113.029041 23800426
-
(2013)
Mol Cell Proteomics
, vol.12
, pp. 3036-3051
-
-
Memišević, V.1
Zavaljevski, N.2
Pieper, R.3
Rajagopala, S.V.4
Kwon, K.5
-
9
-
-
84871811830
-
Infection strategies of bacterial and viral pathogens through pathogen-human protein-protein interactions
-
Durmus Tekir S, Cakir T, Ulgen KO, (2012) Infection strategies of bacterial and viral pathogens through pathogen-human protein-protein interactions. Front Microbiol 3: 46. doi: 10.3389/fmicb.2012.00046 22347880
-
(2012)
Front Microbiol
, vol.3
, pp. 46
-
-
Durmus Tekir, S.1
Cakir, T.2
Ulgen, K.O.3
-
10
-
-
40349106161
-
The landscape of human proteins interacting with viruses and other pathogens
-
Dyer MD, Murali TM, Sobral BW, (2008) The landscape of human proteins interacting with viruses and other pathogens. PLOS Pathog 4: e32. doi: 10.1371/journal.ppat.0040032 18282095
-
(2008)
PLOS Pathog
, vol.4
, pp. 32
-
-
Dyer, M.D.1
Murali, T.M.2
Sobral, B.W.3
-
11
-
-
77957817012
-
The human-bacterial pathogen protein interaction networks of Bacillus anthracis, Francisella tularensis, and Yersinia pestis
-
Dyer MD, Neff C, Dufford M, Rivera CG, Shattuck D, et al. (2010) The human-bacterial pathogen protein interaction networks of Bacillus anthracis, Francisella tularensis, and Yersinia pestis. PLOS ONE 5: e12089. doi: 10.1371/journal.pone.0012089 20711500
-
(2010)
PLOS ONE
, vol.5
, pp. 12089
-
-
Dyer, M.D.1
Neff, C.2
Dufford, M.3
Rivera, C.G.4
Shattuck, D.5
-
12
-
-
84858975795
-
The current Salmonella-host interactome
-
Schleker S, Sun J, Raghavan B, Srnec M, Muller N, et al. (2012) The current Salmonella-host interactome. Proteomics Clin Appl 6: 117–133. doi: 10.1002/prca.201100083 22213674
-
(2012)
Proteomics Clin Appl
, vol.6
, pp. 117-133
-
-
Schleker, S.1
Sun, J.2
Raghavan, B.3
Srnec, M.4
Muller, N.5
-
13
-
-
80855129283
-
Insight into bacterial virulence mechanisms against host immune response via the Yersinia pestis-human protein-protein interaction network
-
Yang H, Ke Y, Wang J, Tan Y, Myeni SK, et al. (2011) Insight into bacterial virulence mechanisms against host immune response via the Yersinia pestis-human protein-protein interaction network. Infect Immun 79: 4413–4424. doi: 10.1128/IAI.05622-11 21911467
-
(2011)
Infect Immun
, vol.79
, pp. 4413-4424
-
-
Yang, H.1
Ke, Y.2
Wang, J.3
Tan, Y.4
Myeni, S.K.5
-
14
-
-
84866390995
-
Computational analysis of interactomes: Current and future perspectives for bioinformatics approaches to model the host-pathogen interaction space
-
Arnold R, Boonen K, Sun MG, Kim PM, (2012) Computational analysis of interactomes: Current and future perspectives for bioinformatics approaches to model the host-pathogen interaction space. Methods 57: 508–518. doi: 10.1016/j.ymeth.2012.06.011 22750305
-
(2012)
Methods
, vol.57
, pp. 508-518
-
-
Arnold, R.1
Boonen, K.2
Sun, M.G.3
Kim, P.M.4
-
15
-
-
84866447355
-
Graphlet-based edge clustering reveals pathogen-interacting proteins
-
Solava RW, Michaels RP, Milenković T, (2012) Graphlet-based edge clustering reveals pathogen-interacting proteins. Bioinformatics 28: i480–i486. doi: 10.1093/bioinformatics/bts376 22962470
-
(2012)
Bioinformatics
, vol.28
, pp. 480-486
-
-
Solava, R.W.1
Michaels, R.P.2
Milenković, T.3
-
16
-
-
84879901847
-
Multitask learning for host-pathogen protein interactions
-
Kshirsagar M, Carbonell J, Klein-Seetharaman J, (2013) Multitask learning for host-pathogen protein interactions. Bioinformatics 29: i217–i226. doi: 10.1093/bioinformatics/btt245 23812987
-
(2013)
Bioinformatics
, vol.29
, pp. 217-226
-
-
Kshirsagar, M.1
Carbonell, J.2
Klein-Seetharaman, J.3
-
17
-
-
84866183655
-
Five mechanisms of manipulation by bacterial effectors: A ubiquitous theme
-
Anderson DM, Frank DW, (2012) Five mechanisms of manipulation by bacterial effectors: A ubiquitous theme. PLOS Pathog 8: e1002823. doi: 10.1371/journal.ppat.1002823 22927812
-
(2012)
PLOS Pathog
, vol.8
, pp. 1002823
-
-
Anderson, D.M.1
Frank, D.W.2
-
18
-
-
35348992048
-
Manipulation of host-cell pathways by bacterial pathogens
-
Bhavsar AP, Guttman JA, Finlay BB, (2007) Manipulation of host-cell pathways by bacterial pathogens. Nature 449: 827–834. doi: 10.1038/nature06247 17943119
-
(2007)
Nature
, vol.449
, pp. 827-834
-
-
Bhavsar, A.P.1
Guttman, J.A.2
Finlay, B.B.3
-
19
-
-
73449107179
-
Burkholderia mallei cluster 1 type VI secretion mutants exhibit growth and actin polymerization defects in RAW 264.7 murine macrophages
-
Burtnick MN, DeShazer D, Nair V, Gherardini FC, Brett PJ, (2010) Burkholderia mallei cluster 1 type VI secretion mutants exhibit growth and actin polymerization defects in RAW 264.7 murine macrophages. Infect Immun 78: 88–99. doi: 10.1128/IAI.00985-09 19884331
-
(2010)
Infect Immun
, vol.78
, pp. 88-99
-
-
Burtnick, M.N.1
DeShazer, D.2
Nair, V.3
Gherardini, F.C.4
Brett, P.J.5
-
20
-
-
27744477587
-
Actin-binding proteins from Burkholderia mallei and Burkholderia thailandensis can functionally compensate for the actin-based motility defect of a Burkholderia pseudomallei bimA mutant
-
Stevens JM, Ulrich RL, Taylor LA, Wood MW, Deshazer D, et al. (2005) Actin-binding proteins from Burkholderia mallei and Burkholderia thailandensis can functionally compensate for the actin-based motility defect of a Burkholderia pseudomallei bimA mutant. J Bacteriol 187: 7857–7862. doi: 10.1128/JB.187.22.7857-7862.2005 16267310
-
(2005)
J Bacteriol
, vol.187
, pp. 7857-7862
-
-
Stevens, J.M.1
Ulrich, R.L.2
Taylor, L.A.3
Wood, M.W.4
Deshazer, D.5
-
21
-
-
0842304717
-
Type III secretion: A virulence factor delivery system essential for the pathogenicity of Burkholderia mallei
-
Ulrich RL, DeShazer D, (2004) Type III secretion: A virulence factor delivery system essential for the pathogenicity of Burkholderia mallei. Infect Immun 72: 1150–1154. doi: 10.1128/IAI.72.2.1150-1154.2004 14742564
-
(2004)
Infect Immun
, vol.72
, pp. 1150-1154
-
-
Ulrich, R.L.1
DeShazer, D.2
-
22
-
-
84904798767
-
DBSecSys: A database of Burkholderia mallei secretion systems
-
Memišević V, Kumar K, Cheng L, Zavaljevski N, DeShazer D, et al. (2014) DBSecSys: A database of Burkholderia mallei secretion systems. BMC Bioinformatics 15: 244. doi: 10.1186/1471-2105-15-244 25030112
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 244
-
-
Memišević, V.1
Kumar, K.2
Cheng, L.3
Zavaljevski, N.4
DeShazer, D.5
-
23
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene Ontology: Tool for the unification of biology. Nat Genet 25: 25–29. doi: 10.1038/75556 10802651
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
-
24
-
-
63149153365
-
Burkholderia mallei tssM encodes a putative deubiquitinase that is secreted and expressed inside infected RAW 264.7 murine macrophages
-
Shanks J, Burtnick MN, Brett PJ, Waag DM, Spurgers KB, et al. (2009) Burkholderia mallei tssM encodes a putative deubiquitinase that is secreted and expressed inside infected RAW 264.7 murine macrophages. Infect Immun 77: 1636–1648. doi: 10.1128/IAI.01339-08 19168747
-
(2009)
Infect Immun
, vol.77
, pp. 1636-1648
-
-
Shanks, J.1
Burtnick, M.N.2
Brett, P.J.3
Waag, D.M.4
Spurgers, K.B.5
-
25
-
-
84860525022
-
Inferring high-confidence human protein-protein interactions
-
Yu X, Wallqvist A, Reifman J, (2012) Inferring high-confidence human protein-protein interactions. BMC Bioinformatics 13: 79. doi: 10.1186/1471-2105-13-79 22558947
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 79
-
-
Yu, X.1
Wallqvist, A.2
Reifman, J.3
-
26
-
-
0034650872
-
14–3–3 isotypes facilitate coupling of protein kinase C-zeta to Raf-1: Negative regulation by 14–3–3 phosphorylation
-
Van Der Hoeven PC, Van Der Wal JC, Ruurs P, Van Dijk MC, Van Blitterswijk J, (2000) 14–3–3 isotypes facilitate coupling of protein kinase C-zeta to Raf-1: Negative regulation by 14–3–3 phosphorylation. Biochem J 345 Pt 2: 297–306. doi: 10.1042/0264-6021:3450297
-
(2000)
Biochem J 345 Pt
, vol.2
, pp. 297-306
-
-
Van Der Hoeven, P.C.1
Van Der Wal, J.C.2
Ruurs, P.3
Van Dijk, M.C.4
Van Blitterswijk, J.5
-
27
-
-
62949096122
-
Moonlighting proteins—an update
-
Jeffery CJ, (2009) Moonlighting proteins—an update. Mol Biosyst 5: 345–350. doi: 10.1039/b900658n 19396370
-
(2009)
Mol Biosyst
, vol.5
, pp. 345-350
-
-
Jeffery, C.J.1
-
28
-
-
79959623005
-
Moonlighting proteins in neurological disorders
-
Ovadi J, (2011) Moonlighting proteins in neurological disorders. IUBMB Life 63: 453–456. doi: 10.1002/iub.491 21698748
-
(2011)
IUBMB Life
, vol.63
, pp. 453-456
-
-
Ovadi, J.1
-
29
-
-
80052329723
-
Bacterial virulence in the moonlight: Multitasking bacterial moonlighting proteins are virulence determinants in infectious disease
-
Henderson B, Martin A, (2011) Bacterial virulence in the moonlight: Multitasking bacterial moonlighting proteins are virulence determinants in infectious disease. Infect Immun 79: 3476–3491. doi: 10.1128/IAI.00179-11 21646455
-
(2011)
Infect Immun
, vol.79
, pp. 3476-3491
-
-
Henderson, B.1
Martin, A.2
-
30
-
-
18944398669
-
Single-gene disorders: What role could moonlighting enzymes play?
-
Sriram G, Martinez JA, McCabe ER, Liao JC, Dipple KM, (2005) Single-gene disorders: What role could moonlighting enzymes play? Am J Hum Genet 76: 911–924. doi: 10.1086/430799 15877277
-
(2005)
Am J Hum Genet
, vol.76
, pp. 911-924
-
-
Sriram, G.1
Martinez, J.A.2
McCabe, E.R.3
Liao, J.C.4
Dipple, K.M.5
-
31
-
-
0037305038
-
Regulators of G-protein signalling: Multifunctional proteins with impact on signalling in the cardiovascular system
-
Wieland T, Mittmann C, (2003) Regulators of G-protein signalling: Multifunctional proteins with impact on signalling in the cardiovascular system. Pharmacol Ther 97: 95–115. doi: 10.1016/S0163-7258(02)00326-1 12559385
-
(2003)
Pharmacol Ther
, vol.97
, pp. 95-115
-
-
Wieland, T.1
Mittmann, C.2
-
32
-
-
0032919364
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Ogata H, Goto S, Sato K, Fujibuchi W, Bono H, et al. (1999) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 27: 29–34. doi: 10.1093/nar/27.1.29 9847135
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 29-34
-
-
Ogata, H.1
Goto, S.2
Sato, K.3
Fujibuchi, W.4
Bono, H.5
-
33
-
-
21344445498
-
Bacteria-host-cell interactions at the plasma membrane: Stories on actin cytoskeleton subversion
-
Rottner K, Stradal TE, Wehland J, (2005) Bacteria-host-cell interactions at the plasma membrane: Stories on actin cytoskeleton subversion. Dev Cell 9: 3–17. doi: 10.1016/j.devcel.2005.06.002 15992537
-
(2005)
Dev Cell
, vol.9
, pp. 3-17
-
-
Rottner, K.1
Stradal, T.E.2
Wehland, J.3
-
34
-
-
83055182119
-
Categorizing biases in high-confidence high-throughput protein-protein interaction data sets
-
Yu X, Ivanic J, Memišević V, Wallqvist A, Reifman J, (2011) Categorizing biases in high-confidence high-throughput protein-protein interaction data sets. Mol Cell Proteomics 10: M111.012500. doi: 10.1074/mcp.M111.012500 21876202
-
(2011)
Mol Cell Proteomics
, vol.10
, pp. 12500
-
-
Yu, X.1
Ivanic, J.2
Memišević, V.3
Wallqvist, A.4
Reifman, J.5
-
35
-
-
33646543996
-
Characterization of the Yersinia enterocolitica type III secretion ATPase YscN and its regulator, YscL
-
Blaylock B, Riordan KE, Missiakas DM, Schneewind O, (2006) Characterization of the Yersinia enterocolitica type III secretion ATPase YscN and its regulator, YscL. J Bacteriol 188: 3525–3534. doi: 10.1128/JB.188.10.3525-3534.2006 16672607
-
(2006)
J Bacteriol
, vol.188
, pp. 3525-3534
-
-
Blaylock, B.1
Riordan, K.E.2
Missiakas, D.M.3
Schneewind, O.4
-
36
-
-
0036723782
-
SpiC is required for translocation of Salmonella pathogenicity island 2 effectors and secretion of translocon proteins SseB and SseC
-
Freeman JA, Rappl C, Kuhle V, Hensel M, Miller SI, (2002) SpiC is required for translocation of Salmonella pathogenicity island 2 effectors and secretion of translocon proteins SseB and SseC. J Bacteriol 184: 4971–4980. doi: 10.1128/JB.184.18.4971-4980.2002 12193612
-
(2002)
J Bacteriol
, vol.184
, pp. 4971-4980
-
-
Freeman, J.A.1
Rappl, C.2
Kuhle, V.3
Hensel, M.4
Miller, S.I.5
-
37
-
-
0028292926
-
YscN, the putative energizer of the Yersinia Yop secretion machinery
-
Woestyn S, Allaoui A, Wattiau P, Cornelis GR, (1994) YscN, the putative energizer of the Yersinia Yop secretion machinery. J Bacteriol 176: 1561–1569. 8132449
-
(1994)
J Bacteriol
, vol.176
, pp. 1561-1569
-
-
Woestyn, S.1
Allaoui, A.2
Wattiau, P.3
Cornelis, G.R.4
-
38
-
-
7644233076
-
SsaM and SpiC interact and regulate secretion of Salmonella pathogenicity island 2 type III secretion system effectors and translocators
-
Yu XJ, Liu M, Holden DW, (2004) SsaM and SpiC interact and regulate secretion of Salmonella pathogenicity island 2 type III secretion system effectors and translocators. Mol Microbiol 54: 604–619. doi: 10.1111/j.1365-2958.2004.04297.x 15491354
-
(2004)
Mol Microbiol
, vol.54
, pp. 604-619
-
-
Yu, X.J.1
Liu, M.2
Holden, D.W.3
-
39
-
-
84876569864
-
Genenames.org: The HGNC resources in 2013
-
Gray KA, Daugherty LC, Gordon SM, Seal RL, Wright MW, et al. (2013) Genenames.org: The HGNC resources in 2013. Nucleic Acids Res 41: D545–D552. doi: 10.1093/nar/gks1066 23161694
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 545-552
-
-
Gray, K.A.1
Daugherty, L.C.2
Gordon, S.M.3
Seal, R.L.4
Wright, M.W.5
-
40
-
-
84857745267
-
Database resources of the National Center for Biotechnology Information
-
Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, et al. (2012) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 40: D13–D25. doi: 10.1093/nar/gkr1184 22140104
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 13-25
-
-
Sayers, E.W.1
Barrett, T.2
Benson, D.A.3
Bolton, E.4
Bryant, S.H.5
-
41
-
-
43349094507
-
The igraph software package for complex network research
-
Csardi G, Nepusz T, (2006) The igraph software package for complex network research. InterJournal Complex Systems: 1695.
-
(2006)
InterJournal Complex Systems
, pp. 1695
-
-
Csardi, G.1
Nepusz, T.2
-
42
-
-
84941871856
-
The Kolmogorov-Smirnov test for goodness of fit
-
Massey FJ, (1951) The Kolmogorov-Smirnov test for goodness of fit. J Am Stat Assoc 46: 68–78. doi: 10.1080/01621459.1951.10500769
-
(1951)
J Am Stat Assoc
, vol.46
, pp. 68-78
-
-
Massey, F.J.1
-
43
-
-
24044522270
-
BioMart and Bioconductor: A powerful link between biological databases and microarray data analysis
-
Durinck S, Moreau Y, Kasprzyk A, Davis S, De Moor B, et al. (2005) BioMart and Bioconductor: A powerful link between biological databases and microarray data analysis. Bioinformatics 21: 3439–3440. doi: 10.1093/bioinformatics/bti525 16082012
-
(2005)
Bioinformatics
, vol.21
, pp. 3439-3440
-
-
Durinck, S.1
Moreau, Y.2
Kasprzyk, A.3
Davis, S.4
De Moor, B.5
-
44
-
-
65649116900
-
KEGGgraph: A graph approach to KEGG PATHWAY in R and bioconductor
-
Zhang JD, Wiemann S, (2009) KEGGgraph: A graph approach to KEGG PATHWAY in R and bioconductor. Bioinformatics 25: 1470–1471. doi: 10.1093/bioinformatics/btp167 19307239
-
(2009)
Bioinformatics
, vol.25
, pp. 1470-1471
-
-
Zhang, J.D.1
Wiemann, S.2
-
45
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y, (1995) Controlling the false discovery rate: A practical and powerful approach to multiple testing. J R Statist Soc 57: 289–300.
-
(1995)
J R Statist Soc
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
46
-
-
84907540931
-
DualAligner: A dual alignment-based strategy to align protein interaction networks
-
Seah BS, Bhowmick SS, Dewey CF, Jr., (2014) DualAligner: A dual alignment-based strategy to align protein interaction networks. Bioinformatics 30: 2619–2626. doi: 10.1093/bioinformatics/btu358 24872427
-
(2014)
Bioinformatics
, vol.30
, pp. 2619-2626
-
-
Seah, B.S.1
Bhowmick, S.S.2
Dewey, C.F.3
-
47
-
-
84894557914
-
NetCoffee: A fast and accurate global alignment approach to identify functionally conserved proteins in multiple networks
-
Hu J, Kehr B, Reinert K, (2014) NetCoffee: A fast and accurate global alignment approach to identify functionally conserved proteins in multiple networks. Bioinformatics 30: 540–548. doi: 10.1093/bioinformatics/btt715 24336806
-
(2014)
Bioinformatics
, vol.30
, pp. 540-548
-
-
Hu, J.1
Kehr, B.2
Reinert, K.3
-
48
-
-
84894559216
-
BEAMS: Backbone extraction and merge strategy for the global many-to-many alignment of multiple PPI networks
-
Alkan F, Erten C, (2014) BEAMS: Backbone extraction and merge strategy for the global many-to-many alignment of multiple PPI networks. Bioinformatics 30: 531–539. doi: 10.1093/bioinformatics/btt713 24336414
-
(2014)
Bioinformatics
, vol.30
, pp. 531-539
-
-
Alkan, F.1
Erten, C.2
-
49
-
-
84879967643
-
NETAL: A new graph-based method for global alignment of protein-protein interaction networks
-
Neyshabur B, Khadem A, Hashemifar S, Arab SS, (2013) NETAL: A new graph-based method for global alignment of protein-protein interaction networks. Bioinformatics 29: 1654–1662. doi: 10.1093/bioinformatics/btt202 23696650
-
(2013)
Bioinformatics
, vol.29
, pp. 1654-1662
-
-
Neyshabur, B.1
Khadem, A.2
Hashemifar, S.3
Arab, S.S.4
-
50
-
-
84875609301
-
SPINAL: Scalable protein interaction network alignment
-
Aladag AE, Erten C, (2013) SPINAL: Scalable protein interaction network alignment. Bioinformatics 29: 917–924. doi: 10.1093/bioinformatics/btt071 23413436
-
(2013)
Bioinformatics
, vol.29
, pp. 917-924
-
-
Aladag, A.E.1
Erten, C.2
-
51
-
-
77956576710
-
Topological network alignment uncovers biological function and phylogeny
-
Kuchaiev O, Milenković T, Memišević V, Hayes W, Pržulj N, (2010) Topological network alignment uncovers biological function and phylogeny. J R Soc Interface 7: 1341–1354. doi: 10.1098/rsif.2010.0063 20236959
-
(2010)
J R Soc Interface
, vol.7
, pp. 1341-1354
-
-
Kuchaiev, O.1
Milenković, T.2
Memišević, V.3
Hayes, W.4
Pržulj, N.5
-
52
-
-
79955751671
-
Integrative network alignment reveals large regions of global network similarity in yeast and human
-
Kuchaiev O, Pržulj N, (2011) Integrative network alignment reveals large regions of global network similarity in yeast and human. Bioinformatics 27: 1390–1396. doi: 10.1093/bioinformatics/btr127 21414992
-
(2011)
Bioinformatics
, vol.27
, pp. 1390-1396
-
-
Kuchaiev, O.1
Pržulj, N.2
-
53
-
-
84863680992
-
C-GRAAL: Common-neighbors-based global GRAph ALignment of biological networks
-
Memišević V, Pržulj N, (2012) C-GRAAL: Common-neighbors-based global GRAph ALignment of biological networks. Integr Biol 4: 734–743. doi: 10.1039/c2ib00140c
-
(2012)
Integr Biol
, vol.4
, pp. 734-743
-
-
Memišević, V.1
Pržulj, N.2
-
54
-
-
84870396392
-
Global network alignment using multiscale spectral signatures
-
Patro R, Kingsford C, (2012) Global network alignment using multiscale spectral signatures. Bioinformatics 28: 3105–3114. doi: 10.1093/bioinformatics/bts592 23047556
-
(2012)
Bioinformatics
, vol.28
, pp. 3105-3114
-
-
Patro, R.1
Kingsford, C.2
-
55
-
-
68249117369
-
Identifying evolutionarily conserved protein interaction modules using GraphHopper
-
Rivera C, Murali TM, S. Rajasekaran, (2009) Identifying evolutionarily conserved protein interaction modules using GraphHopper. In: Bioinformatics and Computational Biology. Springer Berlin Heidelberg. pp. 67–78.
-
(2009)
Bioinformatics and Computational Biology
, pp. 67-78
-
-
Rivera, C.1
Murali, T.M.2
S., R.3
-
56
-
-
13844314048
-
Conserved patterns of protein interaction in multiple species
-
Sharan R, Suthram S, Kelley RM, Kuhn T, McCuine S, et al. (2005) Conserved patterns of protein interaction in multiple species. Proc Natl Acad Sci U S A 102: 1974–1979. doi: 10.1073/pnas.0409522102 15687504
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 1974-1979
-
-
Sharan, R.1
Suthram, S.2
Kelley, R.M.3
Kuhn, T.4
McCuine, S.5
-
57
-
-
49649109285
-
Uncovering biological network function via graphlet degree signatures
-
Milenković T, Pržulj N, (2008) Uncovering biological network function via graphlet degree signatures. Cancer Inform 6: 257–273. 19259413
-
(2008)
Cancer Inform
, vol.6
, pp. 257-273
-
-
Milenković, T.1
Pržulj, N.2
-
58
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403–410. doi: 10.1016/S0022-2836(05)80360-2 2231712
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
59
-
-
0001368374
-
Distribution de la flore alpine dans le bassin des Dranses et dans quelques régions voisines
-
Jaccard P, (1901) Distribution de la flore alpine dans le bassin des Dranses et dans quelques régions voisines. Bulletin de la Société Vaudoise des Sciences Naturelles 37: 241–272.
-
(1901)
Bulletin de la Société Vaudoise des Sciences Naturelles
, vol.37
, pp. 241-272
-
-
Jaccard, P.1
-
60
-
-
79960976768
-
UniProt Knowledgebase: A hub of integrated protein data
-
Magrane M, Consortium U (2011) UniProt Knowledgebase: A hub of integrated protein data. Database 2011: bar009.
-
(2011)
-
-
-
61
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, et al. (2003) Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Res 13: 2498–2504. doi: 10.1101/gr.1239303 14597658
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
-
62
-
-
19944433259
-
A type IV pilin, PilA, contributes to adherence of Burkholderia pseudomallei and virulence in vivo
-
Essex-Lopresti AE, Boddey JA, Thomas R, Smith MP, Hartley MG, et al. (2005) A type IV pilin, PilA, contributes to adherence of Burkholderia pseudomallei and virulence in vivo. Infect Immun 73: 1260–1264. doi: 10.1128/IAI.73.2.1260-1264.2005 15664977
-
(2005)
Infect Immun
, vol.73
, pp. 1260-1264
-
-
Essex-Lopresti, A.E.1
Boddey, J.A.2
Thomas, R.3
Smith, M.P.4
Hartley, M.G.5
-
63
-
-
67650490787
-
Burkholderia mallei cellular interactions in a respiratory cell model
-
Whitlock GC, Valbuena GA, Popov VL, Judy BM, Estes DM, et al. (2009) Burkholderia mallei cellular interactions in a respiratory cell model. J Med Microbiol 58: 554–562. doi: 10.1099/jmm.0.007724-0 19369515
-
(2009)
J Med Microbiol
, vol.58
, pp. 554-562
-
-
Whitlock, G.C.1
Valbuena, G.A.2
Popov, V.L.3
Judy, B.M.4
Estes, D.M.5
-
64
-
-
4444223808
-
Attenuated virulence and protective efficacy of a Burkholderia pseudomallei bsa type III secretion mutant in murine models of melioidosis
-
Stevens MP, Haque A, Atkins T, Hill J, Wood MW, et al. (2004) Attenuated virulence and protective efficacy of a Burkholderia pseudomallei bsa type III secretion mutant in murine models of melioidosis. Microbiology 150: 2669–2676. doi: 10.1099/mic.0.27146-0 15289563
-
(2004)
Microbiology
, vol.150
, pp. 2669-2676
-
-
Stevens, M.P.1
Haque, A.2
Atkins, T.3
Hill, J.4
Wood, M.W.5
-
65
-
-
24944519981
-
Multinucleated giant cell formation and apoptosis in infected host cells is mediated by Burkholderia pseudomallei type III secretion protein BipB
-
Suparak S, Kespichayawattana W, Haque A, Easton A, Damnin S, et al. (2005) Multinucleated giant cell formation and apoptosis in infected host cells is mediated by Burkholderia pseudomallei type III secretion protein BipB. J Bacteriol 187: 6556–6560. doi: 10.1128/JB.187.18.6556-6560.2005 16159789
-
(2005)
J Bacteriol
, vol.187
, pp. 6556-6560
-
-
Suparak, S.1
Kespichayawattana, W.2
Haque, A.3
Easton, A.4
Damnin, S.5
-
66
-
-
33646897295
-
Identification of Burkholderia pseudomallei genes required for the intracellular life cycle and in vivo virulence
-
Pilatz S, Breitbach K, Hein N, Fehlhaber B, Schulze J, et al. (2006) Identification of Burkholderia pseudomallei genes required for the intracellular life cycle and in vivo virulence. Infect Immun 74: 3576–3586. doi: 10.1128/IAI.01262-05 16714590
-
(2006)
Infect Immun
, vol.74
, pp. 3576-3586
-
-
Pilatz, S.1
Breitbach, K.2
Hein, N.3
Fehlhaber, B.4
Schulze, J.5
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