-
1
-
-
84921930691
-
Transcriptional regulation of bacterial virulence gene expression by molecular oxygen and nitric oxide
-
Green J, Rolfe MD, Smith LJ, (2014) Transcriptional regulation of bacterial virulence gene expression by molecular oxygen and nitric oxide. Virulence 5: 794–809. doi: 10.4161/viru.27794 25603427
-
(2014)
Virulence
, vol.5
, pp. 794-809
-
-
Green, J.1
Rolfe, M.D.2
Smith, L.J.3
-
2
-
-
84893696425
-
Bacterial virulence and Fis: adapting regulatory networks to the host environment
-
Duprey A, Reverchon S, Nasser W, (2014) Bacterial virulence and Fis: adapting regulatory networks to the host environment. Trends Microbiol 22: 92–99. doi: 10.1016/j.tim.2013.11.008 24370464
-
(2014)
Trends Microbiol
, vol.22
, pp. 92-99
-
-
Duprey, A.1
Reverchon, S.2
Nasser, W.3
-
3
-
-
0024537074
-
Coordinate regulation and sensory transduction in the control of bacterial virulence
-
Miller JF, Mekalanos JJ, Falkow S, (1989) Coordinate regulation and sensory transduction in the control of bacterial virulence. Science 243: 916–922. 2537530
-
(1989)
Science
, vol.243
, pp. 916-922
-
-
Miller, J.F.1
Mekalanos, J.J.2
Falkow, S.3
-
4
-
-
0034056597
-
Temperature-regulated expression of bacterial virulence genes
-
Konkel ME, Tilly K, (2000) Temperature-regulated expression of bacterial virulence genes. Microbes Infect 2: 157–166. 10742688
-
(2000)
Microbes Infect
, vol.2
, pp. 157-166
-
-
Konkel, M.E.1
Tilly, K.2
-
5
-
-
66349113529
-
The role of mRNA structure in translational control in bacteria
-
Geissmann T, Marzi S, Romby P, (2009) The role of mRNA structure in translational control in bacteria. RNA Biol 6: 153–160. 19885993
-
(2009)
RNA Biol
, vol.6
, pp. 153-160
-
-
Geissmann, T.1
Marzi, S.2
Romby, P.3
-
6
-
-
84874968159
-
Post-transcriptional regulation of gene expression in Yersinia species
-
Schiano CA, Lathem WW, (2012) Post-transcriptional regulation of gene expression in Yersinia species. Front Cell Infect Microbiol 2: 129. doi: 10.3389/fcimb.2012.00129 23162797
-
(2012)
Front Cell Infect Microbiol
, vol.2
, pp. 129
-
-
Schiano, C.A.1
Lathem, W.W.2
-
7
-
-
84915760848
-
Small RNA functions in carbon metabolism and virulence of enteric pathogens
-
Papenfort K, Vogel J, (2014) Small RNA functions in carbon metabolism and virulence of enteric pathogens. Front Cell Infect Microbiol 4: 91. doi: 10.3389/fcimb.2014.00091 25077072
-
(2014)
Front Cell Infect Microbiol
, vol.4
, pp. 91
-
-
Papenfort, K.1
Vogel, J.2
-
8
-
-
84860740296
-
The Csr/Rsm system of Yersinia and related pathogens: A post-transcriptional strategy for managing virulence
-
Heroven AK, Bohme K, Dersch P, (2012) The Csr/Rsm system of Yersinia and related pathogens: A post-transcriptional strategy for managing virulence. RNA Biol 9.
-
(2012)
RNA Biol
, vol.9
-
-
Heroven, A.K.1
Bohme, K.2
Dersch, P.3
-
9
-
-
84888363237
-
Small RNA-mediated regulation of host-pathogen interactions
-
Harris JF, Micheva-Viteva S, Li N, Hong-Geller E, (2013) Small RNA-mediated regulation of host-pathogen interactions. Virulence 4: 785–795. doi: 10.4161/viru.26119 23958954
-
(2013)
Virulence
, vol.4
, pp. 785-795
-
-
Harris, J.F.1
Micheva-Viteva, S.2
Li, N.3
Hong-Geller, E.4
-
10
-
-
58049217240
-
Riboswitch RNAs: using RNA to sense cellular metabolism
-
Henkin TM, (2008) Riboswitch RNAs: using RNA to sense cellular metabolism. Genes Dev 22: 3383–3390. doi: 10.1101/gad.1747308 19141470
-
(2008)
Genes Dev
, vol.22
, pp. 3383-3390
-
-
Henkin, T.M.1
-
11
-
-
80052973462
-
Prospects for riboswitch discovery and analysis
-
Breaker RR, (2011) Prospects for riboswitch discovery and analysis. Mol Cell 43: 867–879. doi: 10.1016/j.molcel.2011.08.024 21925376
-
(2011)
Mol Cell
, vol.43
, pp. 867-879
-
-
Breaker, R.R.1
-
12
-
-
84858436083
-
Bacterial RNA thermometers: molecular zippers and switches
-
Kortmann J, Narberhaus F, (2012) Bacterial RNA thermometers: molecular zippers and switches. Nat Rev Microbiol 10: 255–265. doi: 10.1038/nrmicro2730 22421878
-
(2012)
Nat Rev Microbiol
, vol.10
, pp. 255-265
-
-
Kortmann, J.1
Narberhaus, F.2
-
13
-
-
84872543206
-
A decade of riboswitches
-
Serganov A, Nudler E, (2013) A decade of riboswitches. Cell 152: 17–24. doi: 10.1016/j.cell.2012.12.024 23332744
-
(2013)
Cell
, vol.152
, pp. 17-24
-
-
Serganov, A.1
Nudler, E.2
-
15
-
-
75249100904
-
The role of Hfq in bacterial pathogens
-
Chao Y, Vogel J, (2010) The role of Hfq in bacterial pathogens. Curr Opin Microbiol 13: 24–33. doi: 10.1016/j.mib.2010.01.001 20080057
-
(2010)
Curr Opin Microbiol
, vol.13
, pp. 24-33
-
-
Chao, Y.1
Vogel, J.2
-
16
-
-
80053062656
-
Global discovery of small RNAs in Yersinia pseudotuberculosis identifies Yersinia-specific small, noncoding RNAs required for virulence
-
Koo JT, Alleyne TM, Schiano CA, Jafari N, Lathem WW, (2011) Global discovery of small RNAs in Yersinia pseudotuberculosis identifies Yersinia-specific small, noncoding RNAs required for virulence. Proc Natl Acad Sci U S A 108: E709–717. doi: 10.1073/pnas.1101655108 21876162
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 709-717
-
-
Koo, J.T.1
Alleyne, T.M.2
Schiano, C.A.3
Jafari, N.4
Lathem, W.W.5
-
17
-
-
84897516640
-
Genome-wide analysis of small RNAs expressed by Yersinia pestis identifies a regulator of the Yop-Ysc type III secretion system
-
Schiano CA, Koo JT, Schipma MJ, Caulfield AJ, Jafari N, et al. (2014) Genome-wide analysis of small RNAs expressed by Yersinia pestis identifies a regulator of the Yop-Ysc type III secretion system. J Bacteriol 196: 1659–1670. doi: 10.1128/JB.01456-13 24532772
-
(2014)
J Bacteriol
, vol.196
, pp. 1659-1670
-
-
Schiano, C.A.1
Koo, J.T.2
Schipma, M.J.3
Caulfield, A.J.4
Jafari, N.5
-
18
-
-
84874980389
-
Identification and characterization of small RNAs in Yersinia pestis
-
Beauregard A, Smith EA, Petrone BL, Singh N, Karch C, et al. (2013) Identification and characterization of small RNAs in Yersinia pestis. RNA Biol 10: 397–405. doi: 10.4161/rna.23590 23324607
-
(2013)
RNA Biol
, vol.10
, pp. 397-405
-
-
Beauregard, A.1
Smith, E.A.2
Petrone, B.L.3
Singh, N.4
Karch, C.5
-
19
-
-
84858962249
-
Identification by cDNA cloning of abundant sRNAs in a human-avirulent Yersinia pestis strain grown under five different growth conditions
-
Qu Y, Bi L, Ji X, Deng Z, Zhang H, et al. (2012) Identification by cDNA cloning of abundant sRNAs in a human-avirulent Yersinia pestis strain grown under five different growth conditions. Future Microbiol 7: 535–547. doi: 10.2217/fmb.12.13 22439729
-
(2012)
Future Microbiol
, vol.7
, pp. 535-547
-
-
Qu, Y.1
Bi, L.2
Ji, X.3
Deng, Z.4
Zhang, H.5
-
20
-
-
84897561966
-
Determination of sRNA expressions by RNA-seq in Yersinia pestis grown in vitro and during infection
-
Yan Y, Su S, Meng X, Ji X, Qu Y, et al. (2013) Determination of sRNA expressions by RNA-seq in Yersinia pestis grown in vitro and during infection. PLoS One 8: e74495. doi: 10.1371/journal.pone.0074495 24040259
-
(2013)
PLoS One
, vol.8
, pp. 74495
-
-
Yan, Y.1
Su, S.2
Meng, X.3
Ji, X.4
Qu, Y.5
-
21
-
-
77958028354
-
Regulatory RNA in bacterial pathogens
-
Papenfort K, Vogel J, (2010) Regulatory RNA in bacterial pathogens. Cell Host Microbe 8: 116–127. doi: 10.1016/j.chom.2010.06.008 20638647
-
(2010)
Cell Host Microbe
, vol.8
, pp. 116-127
-
-
Papenfort, K.1
Vogel, J.2
-
22
-
-
4344701950
-
Intestinal yersiniosis. Clinical importance, epidemiology, diagnosis, and prevention
-
Bockemuhl J, Roggentin P, (2004) [Intestinal yersiniosis. Clinical importance, epidemiology, diagnosis, and prevention]. Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz 47: 685–691. 15254824
-
(2004)
Bundesgesundheitsblatt Gesundheitsforschung Gesundheitsschutz
, vol.47
, pp. 685-691
-
-
Bockemuhl, J.1
Roggentin, P.2
-
23
-
-
0033598784
-
Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis
-
Achtman M, Zurth K, Morelli G, Torrea G, Guiyoule A, et al. (1999) Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis. Proc Natl Acad Sci U S A 96: 14043–14048. 10570195
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 14043-14048
-
-
Achtman, M.1
Zurth, K.2
Morelli, G.3
Torrea, G.4
Guiyoule, A.5
-
24
-
-
84899853334
-
Parallel independent evolution of pathogenicity within the genus Yersinia
-
Reuter S, Connor TR, Barquist L, Walker D, Feltwell T, et al. (2014) Parallel independent evolution of pathogenicity within the genus Yersinia. Proc Natl Acad Sci U S A 111: 6768–6773. doi: 10.1073/pnas.1317161111 24753568
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. 6768-6773
-
-
Reuter, S.1
Connor, T.R.2
Barquist, L.3
Walker, D.4
Feltwell, T.5
-
25
-
-
4644293305
-
Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis
-
Chain PS, Carniel E, Larimer FW, Lamerdin J, Stoutland PO, et al. (2004) Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis. Proc Natl Acad Sci U S A 101: 13826–13831. 15358858
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 13826-13831
-
-
Chain, P.S.1
Carniel, E.2
Larimer, F.W.3
Lamerdin, J.4
Stoutland, P.O.5
-
26
-
-
1342292545
-
The yersiniae—a model genus to study the rapid evolution of bacterial pathogens
-
Wren BW, (2003) The yersiniae—a model genus to study the rapid evolution of bacterial pathogens. Nature Reviews Microbiology 1: 55–64. 15040180
-
(2003)
Nature Reviews Microbiology
, vol.1
, pp. 55-64
-
-
Wren, B.W.1
-
28
-
-
0032710318
-
Yersiniosis I: Microbiological and clinicoepidemiological aspects of plague and non-plague Yersinia infections
-
Smego RA, Frean J, Koornhof H.J., (1999) Yersiniosis I: Microbiological and clinicoepidemiological aspects of plague and non-plague Yersinia infections. Eur J Clin Microbiol Infect Dis 18: 1–15. 10192708
-
(1999)
Eur J Clin Microbiol Infect Dis
, vol.18
, pp. 1-15
-
-
Smego, R.A.1
Frean, J.2
Koornhof, H.J.3
-
29
-
-
0019435530
-
Survey on the reservoirs of Yersinia enterocolitica and Yersinia enterocolitica-like bacteria in Scandinavia
-
Kapperud G, (1981) Survey on the reservoirs of Yersinia enterocolitica and Yersinia enterocolitica-like bacteria in Scandinavia. Acta Pathol Microbiol Scand B 89: 29–35. 7020335
-
(1981)
Acta Pathol Microbiol Scand B
, vol.89
, pp. 29-35
-
-
Kapperud, G.1
-
30
-
-
0029134671
-
Environmental modulation of gene expression and pathogenesis in Yersinia
-
Straley SC, Perry RD, (1995) Environmental modulation of gene expression and pathogenesis in Yersinia. Trends Microbiol 3: 310–317. 8528615
-
(1995)
Trends Microbiol
, vol.3
, pp. 310-317
-
-
Straley, S.C.1
Perry, R.D.2
-
31
-
-
2642644544
-
Multiple mechanisms controlling carbon metabolism in bacteria
-
Saier MH, Jr. (1998) Multiple mechanisms controlling carbon metabolism in bacteria. Biotechnol Bioeng 58: 170–174. 10191387
-
(1998)
Biotechnol Bioeng
, vol.58
, pp. 170-174
-
-
Saier, M.H.1
-
32
-
-
7444245668
-
Identification of the CRP regulon using in vitro and in vivo transcriptional profiling
-
Zheng D, Constantinidou C, Hobman JL, Minchin SD, (2004) Identification of the CRP regulon using in vitro and in vivo transcriptional profiling. Nucleic Acids Res 32: 5874–5893. 15520470
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5874-5893
-
-
Zheng, D.1
Constantinidou, C.2
Hobman, J.L.3
Minchin, S.D.4
-
33
-
-
55849089933
-
The cyclic AMP receptor protein, CRP, is required for both virulence and expression of the minimal CRP regulon in Yersinia pestis biovar microtus
-
Zhan L, Han Y, Yang L, Geng J, Li Y, et al. (2008) The cyclic AMP receptor protein, CRP, is required for both virulence and expression of the minimal CRP regulon in Yersinia pestis biovar microtus. Infect Immun 76: 5028–5037. doi: 10.1128/IAI.00370-08 18710863
-
(2008)
Infect Immun
, vol.76
, pp. 5028-5037
-
-
Zhan, L.1
Han, Y.2
Yang, L.3
Geng, J.4
Li, Y.5
-
34
-
-
84879823814
-
Crp induces switching of the CsrB and CsrC RNAs in Yersinia pseudotuberculosis and links nutritional status to virulence
-
Heroven AK, Sest M, Pisano F, Scheb-Wetzel M, Steinmann R, et al. (2012) Crp induces switching of the CsrB and CsrC RNAs in Yersinia pseudotuberculosis and links nutritional status to virulence. Front Cell Infect Microbiol 2: 158. doi: 10.3389/fcimb.2012.00158 23251905
-
(2012)
Front Cell Infect Microbiol
, vol.2
, pp. 158
-
-
Heroven, A.K.1
Sest, M.2
Pisano, F.3
Scheb-Wetzel, M.4
Steinmann, R.5
-
35
-
-
84923849307
-
Reprogramming of Yersinia from virulent to persistent mode revealed by complex in vivo RNA-seq analysis
-
Avican K, Fahlgren A, Huss M, Heroven AK, Beckstette M, et al. (2015) Reprogramming of Yersinia from virulent to persistent mode revealed by complex in vivo RNA-seq analysis. PLoS Pathog 11: e1004600. doi: 10.1371/journal.ppat.1004600 25590628
-
(2015)
PLoS Pathog
, vol.11
, pp. 1004600
-
-
Avican, K.1
Fahlgren, A.2
Huss, M.3
Heroven, A.K.4
Beckstette, M.5
-
36
-
-
84903362673
-
Posttranscriptional regulation of the Yersinia pestis cyclic AMP receptor protein Crp and impact on virulence
-
Lathem WW, Schroeder JA, Bellows LE, Ritzert JT, Koo JT, et al. (2014) Posttranscriptional regulation of the Yersinia pestis cyclic AMP receptor protein Crp and impact on virulence. MBio 5: e01038–01013. doi: 10.1128/mBio.01038-13 24520064
-
(2014)
MBio
, vol.5
-
-
Lathem, W.W.1
Schroeder, J.A.2
Bellows, L.E.3
Ritzert, J.T.4
Koo, J.T.5
-
37
-
-
69949144380
-
Direct and negative regulation of the sycO-ypkA-ypoJ operon by cyclic AMP receptor protein (CRP) in Yersinia pestis
-
Zhan L, Yang L, Zhou L, Li Y, Gao H, et al. (2009) Direct and negative regulation of the sycO-ypkA-ypoJ operon by cyclic AMP receptor protein (CRP) in Yersinia pestis. BMC Microbiol 9: 178. doi: 10.1186/1471-2180-9-178 19703315
-
(2009)
BMC Microbiol
, vol.9
, pp. 178
-
-
Zhan, L.1
Yang, L.2
Zhou, L.3
Li, Y.4
Gao, H.5
-
38
-
-
37449002694
-
Direct transcriptional control of the plasminogen activator gene of Yersinia pestis by the cyclic AMP receptor protein
-
Kim TJ, Chauhan S, Motin VL, Goh EB, Igo MM, et al. (2007) Direct transcriptional control of the plasminogen activator gene of Yersinia pestis by the cyclic AMP receptor protein. J Bacteriol 189: 8890–8900. 17933899
-
(2007)
J Bacteriol
, vol.189
, pp. 8890-8900
-
-
Kim, T.J.1
Chauhan, S.2
Motin, V.L.3
Goh, E.B.4
Igo, M.M.5
-
39
-
-
84908190428
-
The pyruvate-tricarboxylic acid cycle node: a focal point of virulence control in the enteric pathogen Yersinia pseudotuberculosis
-
Bücker R, Heroven AK, Becker J, Dersch P, Wittmann C, (2014) The pyruvate-tricarboxylic acid cycle node: a focal point of virulence control in the enteric pathogen Yersinia pseudotuberculosis. J Biol Chem 289: 30114–30132. doi: 10.1074/jbc.M114.581348 25164818
-
(2014)
J Biol Chem
, vol.289
, pp. 30114-30132
-
-
Bücker, R.1
Heroven, A.K.2
Becker, J.3
Dersch, P.4
Wittmann, C.5
-
40
-
-
84920869177
-
Community behavior and spatial regulation within a bacterial microcolony in deep tissue sites serves to protect against host attack
-
Davis KM, Mohammadi S, Isberg RR, (2015) Community behavior and spatial regulation within a bacterial microcolony in deep tissue sites serves to protect against host attack. Cell Host Microbe 17: 21–31. doi: 10.1016/j.chom.2014.11.008 25500192
-
(2015)
Cell Host Microbe
, vol.17
, pp. 21-31
-
-
Davis, K.M.1
Mohammadi, S.2
Isberg, R.R.3
-
41
-
-
84906346426
-
A direct link between the global regulator PhoP and the Csr regulon in Y. pseudotuberculosis through the small regulatory RNA CsrC
-
Nuss AM, Schuster F, Kathrin Heroven A, Heine W, Pisano F, et al. (2014) A direct link between the global regulator PhoP and the Csr regulon in Y. pseudotuberculosis through the small regulatory RNA CsrC. RNA Biol 11: 580–593. 24786463
-
(2014)
RNA Biol
, vol.11
, pp. 580-593
-
-
Nuss, A.M.1
Schuster, F.2
Kathrin Heroven, A.3
Heine, W.4
Pisano, F.5
-
42
-
-
84904727626
-
Colonization of cecum is important for development of persistent infection by Yersinia pseudotuberculosis
-
Fahlgren A, Avican K, Westermark L, Nordfelth R, Fallman M, (2014) Colonization of cecum is important for development of persistent infection by Yersinia pseudotuberculosis. Infect Immun 82: 3471–3482. doi: 10.1128/IAI.01793-14 24891107
-
(2014)
Infect Immun
, vol.82
, pp. 3471-3482
-
-
Fahlgren, A.1
Avican, K.2
Westermark, L.3
Nordfelth, R.4
Fallman, M.5
-
43
-
-
77957145681
-
The presence of professional phagocytes dictates the number of host cells targeted for Yop translocation during infection
-
Durand EA, Maldonado-Arocho FJ, Castillo C, Walsh RL, Mecsas J, (2010) The presence of professional phagocytes dictates the number of host cells targeted for Yop translocation during infection. Cell Microbiol 12: 1064–1082. doi: 10.1111/j.1462-5822.2010.01451.x 20148898
-
(2010)
Cell Microbiol
, vol.12
, pp. 1064-1082
-
-
Durand, E.A.1
Maldonado-Arocho, F.J.2
Castillo, C.3
Walsh, R.L.4
Mecsas, J.5
-
44
-
-
84869809433
-
Autoproteolysis and intramolecular dissociation of Yersinia YscU precedes secretion of its C-terminal polypeptide YscU(CC)
-
Frost S, Ho O, Login FH, Weise CF, Wolf-Watz H, et al. (2012) Autoproteolysis and intramolecular dissociation of Yersinia YscU precedes secretion of its C-terminal polypeptide YscU(CC). PLoS One 7: e49349. doi: 10.1371/journal.pone.0049349 23185318
-
(2012)
PLoS One
, vol.7
, pp. 49349
-
-
Frost, S.1
Ho, O.2
Login, F.H.3
Weise, C.F.4
Wolf-Watz, H.5
-
45
-
-
0021920004
-
Expression of the temperature-inducible outer membrane proteins of yersiniae
-
Bolin I, Portnoy DA, Wolf-Watz H, (1985) Expression of the temperature-inducible outer membrane proteins of yersiniae. Infect Immun 48: 234–240. 3980086
-
(1985)
Infect Immun
, vol.48
, pp. 234-240
-
-
Bolin, I.1
Portnoy, D.A.2
Wolf-Watz, H.3
-
46
-
-
84904265834
-
Differential RNA-seq: the approach behind and the biological insight gained
-
Sharma CM, Vogel J, (2014) Differential RNA-seq: the approach behind and the biological insight gained. Curr Opin Microbiol 19: 97–105. doi: 10.1016/j.mib.2014.06.010 25024085
-
(2014)
Curr Opin Microbiol
, vol.19
, pp. 97-105
-
-
Sharma, C.M.1
Vogel, J.2
-
47
-
-
84925400071
-
Riboswitch discovery by combining RNA-seq and genome-wide identification of transcriptional start sites
-
Rosinski-Chupin I, Soutourina O, Martin-Verstraete I, (2014) Riboswitch discovery by combining RNA-seq and genome-wide identification of transcriptional start sites. Methods Enzymol 549: 3–27. doi: 10.1016/B978-0-12-801122-5.00001-5 25432742
-
(2014)
Methods Enzymol
, vol.549
, pp. 3-27
-
-
Rosinski-Chupin, I.1
Soutourina, O.2
Martin-Verstraete, I.3
-
48
-
-
84878502476
-
Genome-wide identification of regulatory RNAs in the human pathogen Clostridium difficile
-
Soutourina OA, Monot M, Boudry P, Saujet L, Pichon C, et al. (2013) Genome-wide identification of regulatory RNAs in the human pathogen Clostridium difficile. PLoS Genet 9: e1003493. doi: 10.1371/journal.pgen.1003493 23675309
-
(2013)
PLoS Genet
, vol.9
, pp. 1003493
-
-
Soutourina, O.A.1
Monot, M.2
Boudry, P.3
Saujet, L.4
Pichon, C.5
-
49
-
-
0020073144
-
Temperature-inducible outer membrane protein of Yersinia pseudotuberculosis and Yersinia enterocolitica is associated with the virulence plasmid
-
Bolin I, Norlander I, Wolf-Watz H, (1982) Temperature-inducible outer membrane protein of Yersinia pseudotuberculosis and Yersinia enterocolitica is associated with the virulence plasmid. Infect Immun 37: 506–512. 6749681
-
(1982)
Infect Immun
, vol.37
, pp. 506-512
-
-
Bolin, I.1
Norlander, I.2
Wolf-Watz, H.3
-
50
-
-
0026685104
-
Temperature sensing in Yersinia pestis: regulation of yopE transcription by lcrF
-
Hoe NP, Minion FC, Goguen JD, (1992) Temperature sensing in Yersinia pestis: regulation of yopE transcription by lcrF. J Bacteriol 174: 4275–4286. 1624422
-
(1992)
J Bacteriol
, vol.174
, pp. 4275-4286
-
-
Hoe, N.P.1
Minion, F.C.2
Goguen, J.D.3
-
51
-
-
0026561721
-
LcrF is the temperature-regulated activator of the yadA gene of Yersinia enterocolitica and Yersinia pseudotuberculosis
-
Skurnik M, Toivanen P, (1992) LcrF is the temperature-regulated activator of the yadA gene of Yersinia enterocolitica and Yersinia pseudotuberculosis. J Bacteriol 174: 2047–2051. 1548243
-
(1992)
J Bacteriol
, vol.174
, pp. 2047-2051
-
-
Skurnik, M.1
Toivanen, P.2
-
52
-
-
84871714811
-
Concerted actions of a thermo-labile regulator and a unique intergenic RNA thermosensor control Yersinia virulence
-
Böhme K, Steinmann R, Kortmann J, Seekircher S, Heroven AK, et al. (2012) Concerted actions of a thermo-labile regulator and a unique intergenic RNA thermosensor control Yersinia virulence. PLoS Pathog 8: e1002518. doi: 10.1371/journal.ppat.1002518 22359501
-
(2012)
PLoS Pathog
, vol.8
, pp. 1002518
-
-
Böhme, K.1
Steinmann, R.2
Kortmann, J.3
Seekircher, S.4
Heroven, A.K.5
-
53
-
-
79960433506
-
Hfq and its constellation of RNA
-
Vogel J, Luisi BF, (2011) Hfq and its constellation of RNA. Nat Rev Microbiol 9: 578–589. doi: 10.1038/nrmicro2615 21760622
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 578-589
-
-
Vogel, J.1
Luisi, B.F.2
-
54
-
-
0032716841
-
Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid
-
Ali Azam T, Iwata A, Nishimura A, Ueda S, Ishihama A, (1999) Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid. J Bacteriol 181: 6361–6370. 10515926
-
(1999)
J Bacteriol
, vol.181
, pp. 6361-6370
-
-
Ali Azam, T.1
Iwata, A.2
Nishimura, A.3
Ueda, S.4
Ishihama, A.5
-
55
-
-
0032934566
-
Molecular characterization of KatY (antigen 5), a thermoregulated chromosomally encoded catalase-peroxidase of Yersinia pestis
-
Garcia E, Nedialkov YA, Elliott J, Motin VL, Brubaker RR, (1999) Molecular characterization of KatY (antigen 5), a thermoregulated chromosomally encoded catalase-peroxidase of Yersinia pestis. J Bacteriol 181: 3114–3122. 10322012
-
(1999)
J Bacteriol
, vol.181
, pp. 3114-3122
-
-
Garcia, E.1
Nedialkov, Y.A.2
Elliott, J.3
Motin, V.L.4
Brubaker, R.R.5
-
56
-
-
3843113478
-
RovA is autoregulated and antagonizes H-NS-mediated silencing of invasin and rovA expression in Yersinia pseudotuberculosis
-
Heroven A, Nagel G, Tran HJ, Parr S, Dersch P, (2004) RovA is autoregulated and antagonizes H-NS-mediated silencing of invasin and rovA expression in Yersinia pseudotuberculosis. Mol Microbiol 53: 871–888. 15255899
-
(2004)
Mol Microbiol
, vol.53
, pp. 871-888
-
-
Heroven, A.1
Nagel, G.2
Tran, H.J.3
Parr, S.4
Dersch, P.5
-
57
-
-
34547764310
-
Comparative analysis of the regulation of rovA from the pathogenic yersiniae
-
Lawrenz MB, Miller VL, (2007) Comparative analysis of the regulation of rovA from the pathogenic yersiniae. J Bacteriol 189: 5963–5975. 17573476
-
(2007)
J Bacteriol
, vol.189
, pp. 5963-5975
-
-
Lawrenz, M.B.1
Miller, V.L.2
-
58
-
-
0028243445
-
Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12
-
Tsui H, Leung H, Winkler ME, (1994) Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12. Molecular Microbiology 13: 35–49. 7984093
-
(1994)
Molecular Microbiology
, vol.13
, pp. 35-49
-
-
Tsui, H.1
Leung, H.2
Winkler, M.E.3
-
59
-
-
77955958425
-
The importance of the small RNA chaperone Hfq for growth of epidemic Yersinia pestis, but not Yersinia pseudotuberculosis, with implications for plague biology
-
Bai G, Golubov A, Smith EA, McDonough KA, (2010) The importance of the small RNA chaperone Hfq for growth of epidemic Yersinia pestis, but not Yersinia pseudotuberculosis, with implications for plague biology. J Bacteriol 192: 4239–4245. doi: 10.1128/JB.00504-10 20543069
-
(2010)
J Bacteriol
, vol.192
, pp. 4239-4245
-
-
Bai, G.1
Golubov, A.2
Smith, E.A.3
McDonough, K.A.4
-
60
-
-
2142738304
-
WebLogo: a sequence logo generator
-
Crooks GE, Hon G, Chandonia JM, Brenner SE, (2004) WebLogo: a sequence logo generator. Genome Res 14: 1188–1190. 15173120
-
(2004)
Genome Res
, vol.14
, pp. 1188-1190
-
-
Crooks, G.E.1
Hon, G.2
Chandonia, J.M.3
Brenner, S.E.4
-
61
-
-
84866160409
-
Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling
-
Kim D, Hong JS, Qiu Y, Nagarajan H, Seo JH, et al. (2012) Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling. PLoS Genet 8: e1002867. doi: 10.1371/journal.pgen.1002867 22912590
-
(2012)
PLoS Genet
, vol.8
, pp. 1002867
-
-
Kim, D.1
Hong, J.S.2
Qiu, Y.3
Nagarajan, H.4
Seo, J.H.5
-
62
-
-
84860742976
-
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
-
Kröger C, Dillon SC, Cameron AD, Papenfort K, Sivasankaran SK, et al. (2012) The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proc Natl Acad Sci U S A 109: E1277–1286. doi: 10.1073/pnas.1201061109 22538806
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 1277-1286
-
-
Kröger, C.1
Dillon, S.C.2
Cameron, A.D.3
Papenfort, K.4
Sivasankaran, S.K.5
-
63
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey TL, Elkan C, (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 2: 28–36. 7584402
-
(1994)
Proc Int Conf Intell Syst Mol Biol
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
64
-
-
84860742976
-
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
-
Kröger C, Dillon SC, Cameron AD, Papenfort K, Sivasankaran SK, et al. (2012) The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proc Natl Acad Sci U S A 109: E1277–1286. doi: 10.1073/pnas.1201061109 22538806
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 1277-1286
-
-
Kröger, C.1
Dillon, S.C.2
Cameron, A.D.3
Papenfort, K.4
Sivasankaran, S.K.5
-
65
-
-
77949425194
-
The primary transcriptome of the major human pathogen Helicobacter pylori
-
Sharma CM, Hoffmann S, Darfeuille F, Reignier J, Findeiss S, et al. (2010) The primary transcriptome of the major human pathogen Helicobacter pylori. Nature 464: 250–255. doi: 10.1038/nature08756 20164839
-
(2010)
Nature
, vol.464
, pp. 250-255
-
-
Sharma, C.M.1
Hoffmann, S.2
Darfeuille, F.3
Reignier, J.4
Findeiss, S.5
-
66
-
-
84866924923
-
The single-nucleotide resolution transcriptome of Pseudomonas aeruginosa grown in body temperature
-
Wurtzel O, Yoder-Himes DR, Han K, Dandekar AA, Edelheit S, et al. (2012) The single-nucleotide resolution transcriptome of Pseudomonas aeruginosa grown in body temperature. PLoS Pathog 8: e1002945. doi: 10.1371/journal.ppat.1002945 23028334
-
(2012)
PLoS Pathog
, vol.8
, pp. 1002945
-
-
Wurtzel, O.1
Yoder-Himes, D.R.2
Han, K.3
Dandekar, A.A.4
Edelheit, S.5
-
67
-
-
23144463910
-
RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements
-
Abreu-Goodger C, Merino E, (2005) RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements. Nucleic Acids Res 33: W690–692. 15980564
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 690-692
-
-
Abreu-Goodger, C.1
Merino, E.2
-
68
-
-
42549108780
-
A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism
-
Regulski EE, Moy RH, Weinberg Z, Barrick JE, Yao Z, et al. (2008) A widespread riboswitch candidate that controls bacterial genes involved in molybdenum cofactor and tungsten cofactor metabolism. Mol Microbiol 68: 918–932. doi: 10.1111/j.1365-2958.2008.06208.x 18363797
-
(2008)
Mol Microbiol
, vol.68
, pp. 918-932
-
-
Regulski, E.E.1
Moy, R.H.2
Weinberg, Z.3
Barrick, J.E.4
Yao, Z.5
-
69
-
-
33646007627
-
An RNA sensor for intracellular Mg(2+)
-
Cromie MJ, Shi Y, Latifi T, Groisman EA, (2006) An RNA sensor for intracellular Mg(2+). Cell 125: 71–84. 16615891
-
(2006)
Cell
, vol.125
, pp. 71-84
-
-
Cromie, M.J.1
Shi, Y.2
Latifi, T.3
Groisman, E.A.4
-
70
-
-
34250667609
-
A Mg2+-responding RNA that controls the expression of a Mg2+ transporter
-
Groisman EA, Cromie MJ, Shi Y, Latifi T, (2006) A Mg2+-responding RNA that controls the expression of a Mg2+ transporter. Cold Spring Harb Symp Quant Biol 71: 251–258. 17381304
-
(2006)
Cold Spring Harb Symp Quant Biol
, vol.71
, pp. 251-258
-
-
Groisman, E.A.1
Cromie, M.J.2
Shi, Y.3
Latifi, T.4
-
71
-
-
52949137901
-
Ribosomes bind leaderless mRNA in Escherichia coli through recognition of their 5'-terminal AUG
-
Brock JE, Pourshahian S, Giliberti J, Limbach PA, Janssen GR, (2008) Ribosomes bind leaderless mRNA in Escherichia coli through recognition of their 5'-terminal AUG. RNA 14: 2159–2169. doi: 10.1261/rna.1089208 18755843
-
(2008)
RNA
, vol.14
, pp. 2159-2169
-
-
Brock, J.E.1
Pourshahian, S.2
Giliberti, J.3
Limbach, P.A.4
Janssen, G.R.5
-
72
-
-
84858866772
-
A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli
-
Thomason MK, Fontaine F, De Lay N, Storz G, (2012) A small RNA that regulates motility and biofilm formation in response to changes in nutrient availability in Escherichia coli. Mol Microbiol 84: 17–35. doi: 10.1111/j.1365-2958.2012.07965.x 22289118
-
(2012)
Mol Microbiol
, vol.84
, pp. 17-35
-
-
Thomason, M.K.1
Fontaine, F.2
De Lay, N.3
Storz, G.4
-
73
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W, (2010) Differential expression analysis for sequence count data. Genome Biol 11: R106. doi: 10.1186/gb-2010-11-10-r106 20979621
-
(2010)
Genome Biol
, vol.11
, pp. 106
-
-
Anders, S.1
Huber, W.2
-
74
-
-
0024359948
-
Determinants for thermoinducible cell binding and plasmid-encoded cellular penetration detected in the absence of the Yersinia pseudotuberculosis invasin protein
-
Isberg RR, (1989) Determinants for thermoinducible cell binding and plasmid-encoded cellular penetration detected in the absence of the Yersinia pseudotuberculosis invasin protein. Infect Immun 57: 1998–2005. 2543628
-
(1989)
Infect Immun
, vol.57
, pp. 1998-2005
-
-
Isberg, R.R.1
-
75
-
-
0023786445
-
Analysis of expression and thermoregulation of the Yersinia pseudotuberculosis inv gene with hybrid proteins
-
Isberg RR, Swain A, Falkow S, (1988) Analysis of expression and thermoregulation of the Yersinia pseudotuberculosis inv gene with hybrid proteins. Infect Immun 56: 2133–2138. 2840402
-
(1988)
Infect Immun
, vol.56
, pp. 2133-2138
-
-
Isberg, R.R.1
Swain, A.2
Falkow, S.3
-
76
-
-
0029961543
-
Temperature-dependent regulation of Yersinia enterocolitica Class III flagellar genes
-
Kapatral V, Olson JW, Pepe JC, Miller VL, Minnich SA, (1996) Temperature-dependent regulation of Yersinia enterocolitica Class III flagellar genes. Mol Microbiol 19: 1061–1071. 8830263
-
(1996)
Mol Microbiol
, vol.19
, pp. 1061-1071
-
-
Kapatral, V.1
Olson, J.W.2
Pepe, J.C.3
Miller, V.L.4
Minnich, S.A.5
-
77
-
-
4444360796
-
Temporal global changes in gene expression during temperature transition in Yersinia pestis
-
Motin VL, Georgescu AM, Fitch JP, Gu PP, Nelson DO, et al. (2004) Temporal global changes in gene expression during temperature transition in Yersinia pestis. J Bacteriol 186: 6298–6305. 15342600
-
(2004)
J Bacteriol
, vol.186
, pp. 6298-6305
-
-
Motin, V.L.1
Georgescu, A.M.2
Fitch, J.P.3
Gu, P.P.4
Nelson, D.O.5
-
78
-
-
14944368136
-
The acetate switch
-
Wolfe AJ, (2005) The acetate switch. Microbiol Mol Biol Rev 69: 12–50. 15755952
-
(2005)
Microbiol Mol Biol Rev
, vol.69
, pp. 12-50
-
-
Wolfe, A.J.1
-
79
-
-
0023276469
-
Short chain fatty acids in human large intestine, portal, hepatic and venous blood
-
Cummings JH, Pomare EW, Branch WJ, Naylor CP, Macfarlane GT, (1987) Short chain fatty acids in human large intestine, portal, hepatic and venous blood. Gut 28: 1221–1227. 3678950
-
(1987)
Gut
, vol.28
, pp. 1221-1227
-
-
Cummings, J.H.1
Pomare, E.W.2
Branch, W.J.3
Naylor, C.P.4
Macfarlane, G.T.5
-
80
-
-
77951226115
-
The small RNA chaperone Hfq is required for the virulence of Yersinia pseudotuberculosis
-
Schiano CA, Bellows LE, Lathem WW, (2010) The small RNA chaperone Hfq is required for the virulence of Yersinia pseudotuberculosis. Infect Immun 78: 2034–2044. doi: 10.1128/IAI.01046-09 20231416
-
(2010)
Infect Immun
, vol.78
, pp. 2034-2044
-
-
Schiano, C.A.1
Bellows, L.E.2
Lathem, W.W.3
-
81
-
-
0036086526
-
Essential role for cyclic AMP and its receptor protein in Yersinia enterocolitica virulence
-
Petersen S, Young GM, (2002) Essential role for cyclic AMP and its receptor protein in Yersinia enterocolitica virulence. Infect Immun 70: 3665–3672. 12065508
-
(2002)
Infect Immun
, vol.70
, pp. 3665-3672
-
-
Petersen, S.1
Young, G.M.2
-
82
-
-
67249097456
-
Intrinsic thermal sensing controls proteolysis of Yersinia virulence regulator RovA
-
Herbst K, Bujara M, Heroven AK, Opitz W, Weichert M, et al. (2009) Intrinsic thermal sensing controls proteolysis of Yersinia virulence regulator RovA. PLoS Pathog 5: e1000435. doi: 10.1371/journal.ppat.1000435 19468295
-
(2009)
PLoS Pathog
, vol.5
, pp. 1000435
-
-
Herbst, K.1
Bujara, M.2
Heroven, A.K.3
Opitz, W.4
Weichert, M.5
-
83
-
-
0038469567
-
Function and regulation of the transcriptional activator RovA of Yersinia pseudotuberculosis
-
Nagel G, Heroven AK, Eitel J, Dersch P, (2003) Function and regulation of the transcriptional activator RovA of Yersinia pseudotuberculosis. Adv Exp Med Biol 529: 285–287. 12756772
-
(2003)
Adv Exp Med Biol
, vol.529
, pp. 285-287
-
-
Nagel, G.1
Heroven, A.K.2
Eitel, J.3
Dersch, P.4
-
84
-
-
79952327376
-
Common and divergent features in transcriptional control of the homologous small RNAs GlmY and GlmZ in Enterobacteriaceae
-
Gopel Y, Luttmann D, Heroven AK, Reichenbach B, Dersch P, et al. (2011) Common and divergent features in transcriptional control of the homologous small RNAs GlmY and GlmZ in Enterobacteriaceae. Nucleic Acids Res 39: 1294–1309. doi: 10.1093/nar/gkq986 20965974
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 1294-1309
-
-
Gopel, Y.1
Luttmann, D.2
Heroven, A.K.3
Reichenbach, B.4
Dersch, P.5
-
85
-
-
34047094398
-
Sigma E controls biogenesis of the antisense RNA MicA
-
Udekwu KI, Wagner EG, (2007) Sigma E controls biogenesis of the antisense RNA MicA. Nucleic Acids Res 35: 1279–1288. 17267407
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 1279-1288
-
-
Udekwu, K.I.1
Wagner, E.G.2
-
86
-
-
33750297745
-
Conserved small non-coding RNAs that belong to the sigma E regulon: role in down-regulation of outer membrane proteins
-
Johansen J, Rasmussen AA, Overgaard M, Valentin-Hansen P, (2006) Conserved small non-coding RNAs that belong to the sigma E regulon: role in down-regulation of outer membrane proteins. J Mol Biol 364: 1–8. 17007876
-
(2006)
J Mol Biol
, vol.364
, pp. 1-8
-
-
Johansen, J.1
Rasmussen, A.A.2
Overgaard, M.3
Valentin-Hansen, P.4
-
87
-
-
80053610878
-
Negative effect of glucose on ompA mRNA stability: a potential role of cyclic AMP in the repression of hfq in Escherichia coli
-
Lin HH, Hsu CC, Yang CD, Ju YW, Chen YP, et al. (2011) Negative effect of glucose on ompA mRNA stability: a potential role of cyclic AMP in the repression of hfq in Escherichia coli. J Bacteriol 193: 5833–5840. doi: 10.1128/JB.05359-11 21840983
-
(2011)
J Bacteriol
, vol.193
, pp. 5833-5840
-
-
Lin, H.H.1
Hsu, C.C.2
Yang, C.D.3
Ju, Y.W.4
Chen, Y.P.5
-
88
-
-
84908190428
-
The pyruvate—tricarboxylic acid cycle node: a focal point of virulence control in the enteric pathogen Yersinia pseudotuberculosis
-
Bücker R, Heroven AK, Becker J, Dersch P, Wittmann C, (2014) The pyruvate—tricarboxylic acid cycle node: a focal point of virulence control in the enteric pathogen Yersinia pseudotuberculosis. J Biol Chem. 289: 30114–32. doi: 10.1074/jbc.M114.581348 25164818
-
(2014)
J Biol Chem
, vol.289
, pp. 30114-30132
-
-
Bücker, R.1
Heroven, A.K.2
Becker, J.3
Dersch, P.4
Wittmann, C.5
-
89
-
-
0004114399
-
-
Sambrook J, (2001) Molecular Cloning: A Laboratory Manual,: Cold Spring Harbor Laboratories, Cold Spring Harbor, NY.
-
(2001)
A Laboratory Manual
-
-
Sambrook, J.1
-
90
-
-
84856557095
-
The Pseudomonas aeruginosa transcriptome in planktonic cultures and static biofilms using RNA sequencing
-
Dötsch A, Eckweiler D, Schniederjans M, Zimmermann A, Jensen V, et al. (2012) The Pseudomonas aeruginosa transcriptome in planktonic cultures and static biofilms using RNA sequencing. PLoS One 7: e31092. doi: 10.1371/journal.pone.0031092 22319605
-
(2012)
PLoS One
, vol.7
, pp. 31092
-
-
Dötsch, A.1
Eckweiler, D.2
Schniederjans, M.3
Zimmermann, A.4
Jensen, V.5
-
91
-
-
84926348148
-
-
Aronesty E (2011) ea-utils: Command-line tools for processing biological data. http://code.google.com/p/ea-utils.
-
-
-
-
92
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B, Salzberg SL, (2012) Fast gapped-read alignment with Bowtie 2. Nat Methods 9: 357–359. doi: 10.1038/nmeth.1923 22388286
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
93
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, et al. (2009) The sequence alignment/map format and SAMtools. Bioinformatics 25: 2078–2079. doi: 10.1093/bioinformatics/btp352 19505943
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
-
94
-
-
84874624264
-
Global mapping of transcription start sites and promoter motifs in the symbiotic alpha-proteobacterium Sinorhizobium meliloti 1021
-
Schluter JP, Reinkensmeier J, Barnett MJ, Lang C, Krol E, et al. (2013) Global mapping of transcription start sites and promoter motifs in the symbiotic alpha-proteobacterium Sinorhizobium meliloti 1021. BMC Genomics 14: 156. doi: 10.1186/1471-2164-14-156 23497287
-
(2013)
BMC Genomics
, vol.14
, pp. 156
-
-
Schluter, J.P.1
Reinkensmeier, J.2
Barnett, M.J.3
Lang, C.4
Krol, E.5
-
95
-
-
84858400338
-
Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions
-
Schmidtke C, Findeiss S, Sharma CM, Kuhfuss J, Hoffmann S, et al. (2012) Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions. Nucleic Acids Res 40: 2020–2031. doi: 10.1093/nar/gkr904 22080557
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 2020-2031
-
-
Schmidtke, C.1
Findeiss, S.2
Sharma, C.M.3
Kuhfuss, J.4
Hoffmann, S.5
-
96
-
-
84898923218
-
TSSAR: TSS annotation regime for dRNA-seq data
-
Amman F, Wolfinger MT, Lorenz R, Hofacker IL, Stadler PF, et al. (2014) TSSAR: TSS annotation regime for dRNA-seq data. BMC Bioinformatics 15: 89. doi: 10.1186/1471-2105-15-89 24674136
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 89
-
-
Amman, F.1
Wolfinger, M.T.2
Lorenz, R.3
Hofacker, I.L.4
Stadler, P.F.5
-
97
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl MW, (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29: e45. 11328886
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 45
-
-
Pfaffl, M.W.1
-
98
-
-
33750695273
-
RovM, a novel LysR-type regulator of the virulence activator gene rovA, controls cell invasion, virulence and motility of Yersinia pseudotuberculosis
-
Heroven AK, Dersch P, (2006) RovM, a novel LysR-type regulator of the virulence activator gene rovA, controls cell invasion, virulence and motility of Yersinia pseudotuberculosis. Mol Microbiol 62: 1469–1483. 17074075
-
(2006)
Mol Microbiol
, vol.62
, pp. 1469-1483
-
-
Heroven, A.K.1
Dersch, P.2
|