-
1
-
-
0014546946
-
Correlated morphometric and biochemical studies on the liver cell. I. Morphometric model, stereologic methods and normal morphometric data for rat liver
-
Weibel, E. R., Stäubli, W., Gnägi, H. R. & Hess, F. A. Correlated morphometric and biochemical studies on the liver cell. i. morphometric model, stereologic methods and normal morphometric data for rat liver. J. Cell Biol. 42, 68-91 (1969).
-
(1969)
J. Cell Biol.
, vol.42
, pp. 68-91
-
-
Weibel, E.R.1
Stäubli, W.2
Gnägi, H.R.3
Hess, F.A.4
-
2
-
-
0029782661
-
Cytoplasmic viscosity near the cell plasma membrane: Translational diffusion of a small fluorescent solute measured by total internal reflection-fluorescence photobleaching recovery
-
Swaminathan, R., Bicknese, S., Periasamy, N. & Verkman, A. S. Cytoplasmic viscosity near the cell plasma membrane: translational diffusion of a small fluorescent solute measured by total internal reflection-fluorescence photobleaching recovery. Biophys. J. 71, 1140-1151 (1996).
-
(1996)
Biophys. J.
, vol.71
, pp. 1140-1151
-
-
Swaminathan, R.1
Bicknese, S.2
Periasamy, N.3
Verkman, A.S.4
-
3
-
-
0028078889
-
Physical properties of cytoplasm
-
Luby-Phelps, K. Physical properties of cytoplasm. Curr. Opin. Cell Biol. 6, 3-9 (1994).
-
(1994)
Curr. Opin. Cell Biol.
, vol.6
, pp. 3-9
-
-
Luby-Phelps, K.1
-
4
-
-
0347552472
-
Diffusion of a small molecule in the cytoplasm of mammalian cells
-
Mastro, A. M., Babich, M. A., Taylor, W. D. & Keith, A. D. Diffusion of a small molecule in the cytoplasm of mammalian cells. Proc. Natl Acad. Sci. USA 81, 3414-3418 (1984).
-
(1984)
Proc. Natl Acad. Sci. USA
, vol.81
, pp. 3414-3418
-
-
Mastro, A.M.1
Babich, M.A.2
Taylor, W.D.3
Keith, A.D.4
-
5
-
-
0036164351
-
Solute and macromolecule diffusion in cellular aqueous compartments
-
Verkman, A. S. Solute and macromolecule diffusion in cellular aqueous compartments. Trends Biochem. Sci. 27, 27-33 (2002).
-
(2002)
Trends Biochem. Sci.
, vol.27
, pp. 27-33
-
-
Verkman, A.S.1
-
6
-
-
78649876151
-
Crowding and hydrodynamic interactions likely dominate in vivo macromolecular motion
-
Ando, T. & Skolnick, J. Crowding and hydrodynamic interactions likely dominate in vivo macromolecular motion. Proc. Natl Acad. Sci. USA 107, 18457-18462 (2010).
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 18457-18462
-
-
Ando, T.1
Skolnick, J.2
-
7
-
-
0030956033
-
Single-particle tracking: Applications to membrane dynamics
-
Saxton, M. J. & Jacobson, K. Single-particle tracking: applications to membrane dynamics. Annu. Rev. Biophys. Biomol. Struct. 26, 373-399 (1997).
-
(1997)
Annu. Rev. Biophys. Biomol. Struct.
, vol.26
, pp. 373-399
-
-
Saxton, M.J.1
Jacobson, K.2
-
8
-
-
0030582803
-
Origin of the anomalous diffusion observed by md simulation at the protein-water interface
-
Bizzarri, A. Origin of the anomalous diffusion observed by md simulation at the protein-water interface. Chem. Phys. Lett. 263, 559-566 (1996).
-
(1996)
Chem. Phys. Lett.
, vol.263
, pp. 559-566
-
-
Bizzarri, A.1
-
9
-
-
84857817727
-
Magnitude and molecular origin of water slowdown next to a protein
-
Sterpone, F., Stirnemann, G. & Laage, D. Magnitude and molecular origin of water slowdown next to a protein. J. Am. Chem. Soc. 134, 4116-4119 (2012).
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 4116-4119
-
-
Sterpone, F.1
Stirnemann, G.2
Laage, D.3
-
10
-
-
0016022523
-
Hydration of proteins and polypeptides
-
Kuntz, I. D. & Kauzmann, W. Hydration of proteins and polypeptides. Adv. Protein Chem. 28, 239-345 (1974).
-
(1974)
Adv. Protein Chem.
, vol.28
, pp. 239-345
-
-
Kuntz, I.D.1
Kauzmann, W.2
-
11
-
-
4344602172
-
Protein hydration dynamics in solution: A critical survey
-
Halle, B. Protein hydration dynamics in solution: a critical survey. Philos. T. Roy. Soc. B 359, 1207-1224 (2004).
-
(2004)
Philos. T. Roy. Soc. B
, vol.359
, pp. 1207-1224
-
-
Halle, B.1
-
12
-
-
25444514520
-
Water dynamics in the hydration layer around proteins and micelles
-
Bagchi, B. Water dynamics in the hydration layer around proteins and micelles. Chem. Rev. 105, 3197-3219 (2005).
-
(2005)
Chem. Rev.
, vol.105
, pp. 3197-3219
-
-
Bagchi, B.1
-
13
-
-
80051591247
-
Mapping the hydration dynamics of ubiquitin
-
Nucci, N. V., Pometun, M. S. & Wand, A. J. Mapping the hydration dynamics of ubiquitin. J. Am. Chem. Soc. 133, 12326-12329 (2011).
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 12326-12329
-
-
Nucci, N.V.1
Pometun, M.S.2
Wand, A.J.3
-
14
-
-
77955547676
-
Analysis of water in confined geometries and at interfaces
-
Fayer, M. D. & Levinger, N. E. Analysis of water in confined geometries and at interfaces. Annu. Rev. Anal. Chem. 3, 89-107 (2010).
-
(2010)
Annu. Rev. Anal. Chem.
, vol.3
, pp. 89-107
-
-
Fayer, M.D.1
Levinger, N.E.2
-
15
-
-
77951677424
-
Dynamics on the way to forming glass: Bubbles in space-time
-
Chandler, D. & Garrahan, J. P. Dynamics on the way to forming glass: bubbles in space-time. Annu. Rev. Phys. Chem. 61, 191-217 (2010).
-
(2010)
Annu. Rev. Phys. Chem.
, vol.61
, pp. 191-217
-
-
Chandler, D.1
Garrahan, J.P.2
-
16
-
-
36849027111
-
Decoupling of exchange and persistence times in atomistic models of glass formers
-
Hedges, L. O., Maibaum, L., Chandler, D. & Garrahan, J. P. Decoupling of exchange and persistence times in atomistic models of glass formers. J. Chem. Phys. 127, 211101 (2007).
-
(2007)
J. Chem. Phys.
, vol.127
, pp. 211101
-
-
Hedges, L.O.1
Maibaum, L.2
Chandler, D.3
Garrahan, J.P.4
-
17
-
-
33748344040
-
The violation of the stokes-Einstein relation in supercooled water
-
Chen, S.-H. et al. The violation of the stokes-einstein relation in supercooled water. Proc. Natl Acad. Sci. USA 103, 12974-12978 (2006).
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 12974-12978
-
-
Chen, S.-H.1
-
18
-
-
0002567920
-
Random walks on lattices. II
-
Montroll, E. W. & Weiss, G. H. Random walks on lattices. ii. J. Mat. Phys. 6, 167-181 (1965).
-
(1965)
J. Mat. Phys.
, vol.6
, pp. 167-181
-
-
Montroll, E.W.1
Weiss, G.H.2
-
19
-
-
24644436387
-
Dynamical exchanges in facilitated models of supercooled liquids
-
Jung, Y., Garrahan, J. P. & Chandler, D. Dynamical exchanges in facilitated models of supercooled liquids. J. Chem. Phys. 123, 084509 (2005).
-
(2005)
J. Chem. Phys.
, vol.123
, pp. 084509
-
-
Jung, Y.1
Garrahan, J.P.2
Chandler, D.3
-
20
-
-
48349092358
-
From elementary steps to structural relaxation: A continuous-time random-walk analysis of a supercooled liquid
-
Rubner, O. & Heuer, A. From elementary steps to structural relaxation: a continuous-time random-walk analysis of a supercooled liquid. Phys. Rev. E 78, 011504 (2008).
-
(2008)
Phys. Rev. E
, vol.78
, pp. 011504
-
-
Rubner, O.1
Heuer, A.2
-
21
-
-
0002641421
-
The random walk's guide to anomalous diffusion: A fractional dynamics approach
-
Metzler, R. & Klafter, J. The random walk's guide to anomalous diffusion: a fractional dynamics approach. Phys. Rep. 339, 1-77 (2000).
-
(2000)
Phys. Rep.
, vol.339
, pp. 1-77
-
-
Metzler, R.1
Klafter, J.2
-
22
-
-
84977586068
-
Über die von der molekularkinetischen theorie der wärme geforderte bewegung von in ruhenden flüssigkeiten suspendierten teilchen
-
Einstein, A. Über die von der molekularkinetischen theorie der wärme geforderte bewegung von in ruhenden flüssigkeiten suspendierten teilchen. Ann. Phys. 322, 549-560 (1905).
-
(1905)
Ann. Phys.
, vol.322
, pp. 549-560
-
-
Einstein, A.1
-
23
-
-
0002450503
-
Universal equivalence of mean firstpassage time and kramers rate
-
Reimann, P., Schmid, G. J. & Hänggi, P. Universal equivalence of mean firstpassage time and kramers rate. Phys. Rev. E 60, R1-R4 (1999).
-
(1999)
Phys. Rev. E
, vol.60
, pp. R1-R4
-
-
Reimann, P.1
Schmid, G.J.2
Hänggi, P.3
-
24
-
-
0000551833
-
Influence of the environment on anomalous diffusion
-
Bettin, R., Mannella, R., West, B. & Grigolini, P. Influence of the environment on anomalous diffusion. Phys. Rev. E 51, 212-219 (1995).
-
(1995)
Phys. Rev. E
, vol.51
, pp. 212-219
-
-
Bettin, R.1
Mannella, R.2
West, B.3
Grigolini, P.4
-
25
-
-
0001337961
-
Long-time self-diffusion in concentrated colloidal dispersions
-
Medina-Noyola, M. Long-time self-diffusion in concentrated colloidal dispersions. Phys. Rev. Lett. 60, 2705-2708 (1988).
-
(1988)
Phys. Rev. Lett.
, vol.60
, pp. 2705-2708
-
-
Medina-Noyola, M.1
-
27
-
-
34547485422
-
How protein surfaces induce anomalous dynamics of hydration water
-
Pizzitutti, F., Marchi, M., Sterpone, F. & Rossky, P. J. How protein surfaces induce anomalous dynamics of hydration water. J. Phys. Chem. B 111, 7584-7590 (2007).
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 7584-7590
-
-
Pizzitutti, F.1
Marchi, M.2
Sterpone, F.3
Rossky, P.J.4
-
28
-
-
36549093806
-
A tractable molecular theory of flow in strongly inhomogeneous fluids
-
Bitsanis, I., Vanderlick, T. K., Tirrell, M. & Davis, H. T. A tractable molecular theory of flow in strongly inhomogeneous fluids. J. Chem. Phys. 89, 3152-3162 (1988).
-
(1988)
J. Chem. Phys.
, vol.89
, pp. 3152-3162
-
-
Bitsanis, I.1
Vanderlick, T.K.2
Tirrell, M.3
Davis, H.T.4
-
29
-
-
0000038335
-
Structure and dynamics of nanofluids: Theory and simulations to calculate viscosity
-
Pozhar, L. A. Structure and dynamics of nanofluids: theory and simulations to calculate viscosity. Phys. Rev. E 61, 1432-1446 (2000).
-
(2000)
Phys. Rev. E
, vol.61
, pp. 1432-1446
-
-
Pozhar, L.A.1
-
30
-
-
84865321389
-
Local viscosity of a fluid confined in a narrow pore
-
Hoang, H. & Galliero, G. Local viscosity of a fluid confined in a narrow pore. Phys. Rev. E 86, 21202 (2012).
-
(2012)
Phys. Rev. E
, vol.86
, pp. 21202
-
-
Hoang, H.1
Galliero, G.2
-
31
-
-
0014665094
-
Phase transitions of the lennard-jones system
-
Hansen, J.-P. & Verlet, L. Phase transitions of the lennard-jones system. Phys. Rev. 184, 151-184 (1969).
-
(1969)
Phys. Rev.
, vol.184
, pp. 151-184
-
-
Hansen, J.-P.1
Verlet, L.2
-
32
-
-
67649373968
-
Evolution from surface-influenced to bulk-like dynamics in nanoscopically confined water
-
Castrillón, S. R.-V., Giovambattista, N., Aksay, I. A. & Debenedetti, P. G. Evolution from surface-influenced to bulk-like dynamics in nanoscopically confined water. J. Phys. Chem. B 113, 7973-7976 (2009).
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 7973-7976
-
-
Castrillón, S.R.-V.1
Giovambattista, N.2
Aksay, I.A.3
Debenedetti, P.G.4
-
33
-
-
61949305938
-
Effect of surface polarity on the structure and dynamics of water in nanoscale confinement
-
Castrillón, S. R.-V., Giovambattista, N., Aksay, I. A. & Debenedetti, P. G. Effect of surface polarity on the structure and dynamics of water in nanoscale confinement. J. Phys. Chem. B 113, 1438-1446 (2009).
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 1438-1446
-
-
Castrillón, S.R.-V.1
Giovambattista, N.2
Aksay, I.A.3
Debenedetti, P.G.4
-
34
-
-
80155137038
-
Impact of surface roughness on diffusion of confined fluids
-
Krekelberg, W. P., Shen, V. K., Errington, J. R. & Truskett, T. M. Impact of surface roughness on diffusion of confined fluids. J. Chem. Phys. 135, 154502 (2011).
-
(2011)
J. Chem. Phys.
, vol.135
, pp. 154502
-
-
Krekelberg, W.P.1
Shen, V.K.2
Errington, J.R.3
Truskett, T.M.4
-
35
-
-
0342704441
-
Solvent diffusion outside macromolecular surfaces
-
Lindahl, E. & Edholm, O. Solvent diffusion outside macromolecular surfaces. Phys. Rev. E 57, 791-796 (1998).
-
(1998)
Phys. Rev. E
, vol.57
, pp. 791-796
-
-
Lindahl, E.1
Edholm, O.2
-
36
-
-
0142123115
-
Biomolecular hydration: From water dynamics to hydrodynamics
-
Halle, B. & Davidovic, M. Biomolecular hydration: from water dynamics to hydrodynamics. Proc. Natl Acad. Sci. USA 100, 12135-12140 (2003).
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 12135-12140
-
-
Halle, B.1
Davidovic, M.2
-
37
-
-
36448980290
-
Confinement or the nature of the interface? Dynamics of nanoscopic water
-
Moilanen, D. E., Levinger, N. E., Spry, D. B. & Fayer, M. D. Confinement or the nature of the interface? dynamics of nanoscopic water. J. Am. Chem. Soc. 129, 14311-14318 (2007).
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 14311-14318
-
-
Moilanen, D.E.1
Levinger, N.E.2
Spry, D.B.3
Fayer, M.D.4
-
38
-
-
80052470762
-
Prediction of hydrodynamic and other solution properties of rigid proteins from atomic- and residue-level models
-
Ortega, A., Amorós, D. & de La Torre, J. G. Prediction of hydrodynamic and other solution properties of rigid proteins from atomic- and residue-level models. Biophys. J. 101, 892-898 (2011).
-
(2011)
Biophys. J.
, vol.101
, pp. 892-898
-
-
Ortega, A.1
Amorós, D.2
De La-Torre, J.G.3
-
39
-
-
84875592758
-
Gromacs 4.5: A high-throughput and highly parallel open source molecular simulation toolkit
-
Pronk, S. et al. Gromacs 4.5: a high-throughput and highly parallel open source molecular simulation toolkit. Bioinformatics 29, 845-854 (2013).
-
(2013)
Bioinformatics
, vol.29
, pp. 845-854
-
-
Pronk, S.1
-
40
-
-
33846086933
-
Canonical sampling through velocity rescaling
-
Bussi, G., Donadio, D. & Parrinello, M. Canonical sampling through velocity rescaling. J. Chem. Phys. 126, 014101 (2007).
-
(2007)
J. Chem. Phys.
, vol.126
, pp. 014101
-
-
Bussi, G.1
Donadio, D.2
Parrinello, M.3
-
41
-
-
33645961739
-
A smooth particle mesh ewald method
-
Essmann, U. et al. A smooth particle mesh ewald method. J. Chem. Phys. 103, 8577-8593 (1995).
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
-
42
-
-
0000786676
-
Orientational relaxation dynamics of liquid water studied by molecular dynamics simulation
-
Yeh, Y. & Mou, C. Orientational relaxation dynamics of liquid water studied by molecular dynamics simulation. J. Phys. Chem. B 103, 3699-3705 (1999).
-
(1999)
J. Phys. Chem. B
, vol.103
, pp. 3699-3705
-
-
Yeh, Y.1
Mou, C.2
-
43
-
-
38749123962
-
P-lincs. A parallel linear constraint solver for molecular simulation
-
Hess, B. P-lincs. A parallel linear constraint solver for molecular simulation. J. Chem. Theory Comput. 4, 116-122 (2008).
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 116-122
-
-
Hess, B.1
-
44
-
-
34547824779
-
A comparison of the structure and dynamics of liquid water at hydrophobic and hydrophilic surfaces-A molecular dynamics simulation study
-
Lee, S. H. & Rossky, P. J. A comparison of the structure and dynamics of liquid water at hydrophobic and hydrophilic surfaces-a molecular dynamics simulation study. J. Chem. Phys. 100, 3334-3345 (1994).
-
(1994)
J. Chem. Phys.
, vol.100
, pp. 3334-3345
-
-
Lee, S.H.1
Rossky, P.J.2
-
45
-
-
0030999097
-
Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature
-
Berger, O., Edholm, O. & Jähnig, F. Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature. Biophys. J. 72, 2002-2013 (1997).
-
(1997)
Biophys. J.
, vol.72
, pp. 2002-2013
-
-
Berger, O.1
Edholm, O.2
Jähnig, F.3
-
46
-
-
77955486396
-
Atomic-resolution simulations predict a transition state for vesicle fusion defined by contact of a few lipid tails
-
Kasson, P. M., Lindahl, E. & Pande, V. S. Atomic-resolution simulations predict a transition state for vesicle fusion defined by contact of a few lipid tails. PLoS Comp. Biol. 6, e1000829 (2010).
-
(2010)
PLoS Comp. Biol.
, vol.6
, pp. e1000829
-
-
Kasson, P.M.1
Lindahl, E.2
Pande, V.S.3
-
47
-
-
0019707626
-
Polymorphic transitions in single crystals: A new molecular dynamics method
-
Parrinello, M. & Rahman, A. Polymorphic transitions in single crystals: a new molecular dynamics method. J. Appl. Phys. 52, 7182-7190 (1981).
-
(1981)
J. Appl. Phys.
, vol.52
, pp. 7182-7190
-
-
Parrinello, M.1
Rahman, A.2
-
48
-
-
0242663237
-
A point charge force field for molecular mechanics simulations of proteins based on condensedphase quantum mechanical calculations
-
Duan, Y. et al. A point charge force field for molecular mechanics simulations of proteins based on condensedphase quantum mechanical calculations. J. Comp. Chem. 24, 1999-2012 (2003).
-
(2003)
J. Comp. Chem.
, vol.24
, pp. 1999-2012
-
-
Duan, Y.1
-
49
-
-
0001767488
-
Stokes laws for ions in solutions with ioninduced inhomogeneity
-
Brilliantov, N. & Krapivsky, P. Stokes laws for ions in solutions with ioninduced inhomogeneity. J. Chem. Phys. 95, 6055-6057 (1991).
-
(1991)
J. Chem. Phys.
, vol.95
, pp. 6055-6057
-
-
Brilliantov, N.1
Krapivsky, P.2
|