Crystal structure of virulence factor CJ0248 from Campylobacter jejuni at 2.25 Å resolution reveals a new fold

Proteins: Structure, Function and Genetics

Volumn 62, Issue 1, 2006, Pages 292-296

  Xu, Qingping ^a,b   Schwarzenbacher, Robert ^a,c   McMullan, Daniel ^a,d   Abdubek, Polat ^a,d   Agarwalla, Sanjay ^a,d   Ambing, Eileen ^a,d   Axelrod, Herbert ^a,b   Biorac, Tanya ^a,d   Canaves, Jaume M ^a,c   Chiu, Hsiu Ju ^a,b   Deacon, Ashley M ^a,b   DiDonato, Michael ^a,d   Elsliger, Marc André ^a,e   Godzik, Adam ^a,c   Grittini, Carina ^a,e   Grzechnik, Slawomir K ^a,c   Hale, Joanna ^a,d   Hampton, Eric ^a,d   Han, Gye Won ^a,e   Haugen, Justin ^a,d   Hornsby, Michael ^a,d   Jaroszewski, Lukasz ^a,c   Klock, Heath E ^a,d   Koesema, Eric ^a,d   Kreusch, Andreas ^a,d   Kuhn, Peter ^a,e   Lesley, Scott A ^a,d   Miller, Mitchell D ^a,b   Moy, Kin ^a,e   Nigoghossian, Edward ^a,d   Paulsen, Jessica ^a,d   Quijano, Kevin ^a,d   Reyes, Ron ^a,b   Rife, Chris ^a,b   Spraggon, Glen ^a,d   Stevens, Raymond C ^a,e   Van Den Bedem, Henry ^a,b   Velasquez, Jeff ^a,e   White, Aprilfawn ^a,d   Wolf, Guenter ^a,b   Hodgson, Keith O ^a,b   Wooley, John ^a,c   Wilson, Ian A ^a,e   more..

^a STANFORD UNIVERSITY   (United States)

^b SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d GENOMICS INSTITUTE OF THE NOVARTIS RESEARCH FOUNDATION   (United States)

^e SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; PROTEIN CJ0248; UNCLASSIFIED DRUG; VIRULENCE FACTOR;

ARTICLE; CAMPYLOBACTER JEJUNI; CRYSTAL STRUCTURE; MOLECULAR WEIGHT; NONHUMAN; PRIORITY JOURNAL; PROTEIN FAMILY; PROTEIN FOLDING; PROTEIN STRUCTURE; STRUCTURE ANALYSIS; X RAY CRYSTALLOGRAPHY;

BACTERIAL PROTEINS; CAMPYLOBACTER JEJUNI; CRYSTALLOGRAPHY, X-RAY; MODELS, MOLECULAR; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; VIRULENCE FACTORS;

BACTERIA (MICROORGANISMS); CAMPYLOBACTER JEJUNI;

EID: 30344482554     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/prot.20611     Document Type: Article

References (15)

1. Bateman A, Birney E, Cerruti L, Durbin R, Etwiller L, Eddy SR, Griffiths-Jones S, Howe KL, Marshall M, Sonnhammer EL. The Pfam protein families database. Nuc Acid Res 2002;30:276-280.
2. Aravind L, Koonin EV. The HD domain defines a new superfamily of metal-dependent phosphohydrolases. Trends Biochem Sci 1998; 23:469-472.
3. Hendrixson DR, DiRita VJ. Identification of Campylobacter jejuni genes involved in commensal colonization of the chick gastrointestinal tract. Mol Microbiol 2004;52:471-484.
4. Lesley SA, Kuhn P, Godzik A, Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Wooley J, Taylor SS, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci USA 2002;99:11664-11669.
5. Santarsiero BD, Yegian DT, Lee CC, Spraggon G, Gu J, Scheibe D, Uber DC, Cornell EW, Nordmeyer RA, Kolbe WT, Jin J, Jones AL, Jaklevic JM, Schultz PG, Stevens RC. An approach to rapid protein crystallization using nanodroplets. J Appl Crystallogr 2002;35:278-281.
6. Collaborative Computational Project Number 4. The CCP4 suite: programs for protein crystallography. Acta Crystallogr 1994;D50: 760-763.
7. Tickle IJ, Laskowski RA, Moss DS. Error estimates of protein structure coordinates and deviations from standard geometry by full-matrix refinement of γB- and βB2-crystallin. Acta Crystallogr 1998;D54:243-252.
8. Leslie AGW. Recent changes to the MOSFLM package for processing film and image plate data. Joint CCP4 + ESF-EAMCB Newsletter on Protein Crystallography 1992;26.
9. Terwilliger TC, Berendzen J. Automated structure solution for MIR and MAD. Acta Crystallogr 1999;D55:849-861.
10. Jones TA, Zou J-Y, Cowan SW, Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr 1991;D47: 110-119.
11. Lovell SC, Davis IW, Arendall WB 3rd, de Bakker PI, Word JM, Prisant MG, Richardson JS, Richardson DC. Structure validation by Calpha geometry: phi,psi and Cbeta deviation. Proteins 2003; 50:437-450.
12. Vriend GJ. WHAT IF: A molecular modeling and drug design program. Mol Graph 1990;8:52-56.
13. Matthews BW. Solvent content of protein crystals. J Mol Biol 1968;33:491-497.
14. Holm L, Sander C. Dali: A network tool for protein structure comparison. Trends Biochem Sci 1995;20:478-480.
15. Xu RX, Hassell AM, Vanderwall D, Lambert MH, Holmes WD, Luther MA, Rocque WJ, Milburn MV, Zhao Y, Ke H, Nolte RT. Atomic structure of PDE4: insights into phosphodiesterase mechanism and specificity. Science 2000;288:1822-1825.