메뉴 건너뛰기




Volumn 10, Issue 3, 2015, Pages

The 12p13.33/RAD52 Locus and genetic susceptibility to squamous cell cancers of upper aerodigestive tract

(52)  Delahaye Sourdeix, Manon a   Oliver, Javier a   Timofeeva, Maria N a,b   Gaborieau, Valérie a   Johansson, Mattias a   Chabrier, Amélie a   Wozniak, Magdalena B a   Brenner, Darren R a   Vallée, Maxime P a   Anantharaman, Devasena a   Lagiou, Pagona c   Holcátová, Ivana d   Richiardi, Lorenzo e   Kjaerheim, Kristina f   Agudo, Antonio g   Castellsagué, Xavier g,h   Macfarlane, Tatiana V i   Barzan, Luigi j   Canova, Cristina k,l   Thakker, Nalin S m   more..


Author keywords

[No Author keywords available]

Indexed keywords

ADULT; ALLELE; ARTICLE; CARCINOGENESIS; CASE CONTROL STUDY; CHROMOSOME 12P; COMPUTER MODEL; CONTROLLED STUDY; DIGESTIVE SYSTEM CANCER; DISEASE ASSOCIATION; DNA METHYLATION; FEMALE; GENE; GENE AMPLIFICATION; GENE DOSAGE; GENE EXPRESSION; GENE LOCUS; GENE MAPPING; GENETIC ASSOCIATION; GENETIC HETEROGENEITY; GENETIC IDENTIFICATION; GENETIC RISK; GENETIC SUSCEPTIBILITY; GENOTYPE; HUMAN; HUMAN CELL; INTRON; IRAD52 GENE; LUNG ADENOCARCINOMA; MAJOR CLINICAL STUDY; MALE; QUANTITATIVE TRAIT LOCUS; RNA SEQUENCE; SQUAMOUS CELL CARCINOMA; SQUAMOUS CELL LUNG CARCINOMA; UPPER AERODIGESTIVE TRACT SQUAMOUS CELL CANCER; CHROMOSOME 12; CHROMOSOME MAP; COMPUTER SIMULATION; DEMOGRAPHY; GENETIC PREDISPOSITION; GENETICS; GERM CELL; HEAD AND NECK TUMOR; LUNG TUMOR; MIDDLE AGED; RISK FACTOR; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84925955087     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0117639     Document Type: Article
Times cited : (10)

References (39)
  • 1
    • 78049485263 scopus 로고    scopus 로고
    • Estimates of worldwide burden of cancer in 2008: GLOBOCAN 2008
    • PMID: 21351269
    • Ferlay J, Shin HR, Bray F, Forman D, Mathers C, et al. (2010) Estimates of worldwide burden of cancer in 2008: GLOBOCAN 2008. Int J Cancer 127: 2893-2917. doi: 10.1002/ijc.25516 PMID: 21351269
    • (2010) Int J Cancer , vol.127 , pp. 2893-2917
    • Ferlay, J.1    Shin, H.R.2    Bray, F.3    Forman, D.4    Mathers, C.5
  • 3
    • 79953761295 scopus 로고    scopus 로고
    • A genome-wide association study of upper aerodigestive tract cancers conducted within the INHANCE consortium
    • PMID: 21437268
    • McKay JD, Truong T, Gaborieau V, Chabrier A, Chuang SC, et al. (2011) A genome-wide association study of upper aerodigestive tract cancers conducted within the INHANCE consortium. PLoS Genet 7: e1001333. doi: 10.1371/journal.pgen.1001333 PMID: 21437268
    • (2011) PLoS Genet , vol.7 , pp. e1001333
    • McKay, J.D.1    Truong, T.2    Gaborieau, V.3    Chabrier, A.4    Chuang, S.C.5
  • 4
    • 58249094169 scopus 로고    scopus 로고
    • Family history of cancer: Pooled analysis in the International Head and Neck Cancer Epidemiology Consortium
    • PMID: 18814262
    • Negri E, Boffetta P, Berthiller J, Castellsague X, Curado MP, et al. (2009) Family history of cancer: pooled analysis in the International Head and Neck Cancer Epidemiology Consortium. Int J Cancer 124: 394-401. doi: 10.1002/ijc.23848 PMID: 18814262
    • (2009) Int J Cancer , vol.124 , pp. 394-401
    • Negri, E.1    Boffetta, P.2    Berthiller, J.3    Castellsague, X.4    Curado, M.P.5
  • 5
    • 0035902108 scopus 로고    scopus 로고
    • Genome maintenance mechanisms for preventing cancer
    • PMID: 11357144
    • Hoeijmakers JH (2001) Genome maintenance mechanisms for preventing cancer. Nature 411: 366-374. PMID: 11357144
    • (2001) Nature , vol.411 , pp. 366-374
    • Hoeijmakers, J.H.1
  • 6
    • 0034192040 scopus 로고    scopus 로고
    • Genetic aberrations in oral or head and neck squamous cell carcinoma (SCCHN): 1. Carcinogen metabolism, DNA repair and cell cycle control
    • PMID: 10793327
    • Scully C, Field JK, Tanzawa H (2000) Genetic aberrations in oral or head and neck squamous cell carcinoma (SCCHN): 1. Carcinogen metabolism, DNA repair and cell cycle control. Oral Oncol 36: 256-263. PMID: 10793327
    • (2000) Oral Oncol , vol.36 , pp. 256-263
    • Scully, C.1    Field, J.K.2    Tanzawa, H.3
  • 7
    • 0032694294 scopus 로고    scopus 로고
    • The role of homologous recombination processes in the repair of severe forms of DNA damage in mammalian cells
    • PMID: 10214913
    • Thacker J (1999) The role of homologous recombination processes in the repair of severe forms of DNA damage in mammalian cells. Biochimie 81: 77-85. PMID: 10214913
    • (1999) Biochimie , vol.81 , pp. 77-85
    • Thacker, J.1
  • 8
    • 33749037701 scopus 로고    scopus 로고
    • Mechanism of homologous recombination: Mediators and helicases take on regulatory functions
    • PMID: 16926856
    • Sung P, Klein H (2006) Mechanism of homologous recombination: mediators and helicases take on regulatory functions. Nat Rev Mol Cell Biol 7: 739-750. PMID: 16926856
    • (2006) Nat Rev Mol Cell Biol , vol.7 , pp. 739-750
    • Sung, P.1    Klein, H.2
  • 9
    • 79551661127 scopus 로고    scopus 로고
    • Who's who in human recombination: BRCA2 and RAD52
    • PMID: 21189297
    • Liu J, Heyer WD (2011) Who's who in human recombination: BRCA2 and RAD52. Proc Natl Acad Sci U S A 108: 441-442. doi: 10.1073/pnas.1016614108 PMID: 21189297
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 441-442
    • Liu, J.1    Heyer, W.D.2
  • 10
    • 0032127849 scopus 로고    scopus 로고
    • Role of the human RAD51 protein in homologous recombination and dou-ble-stranded-break repair
    • PMID: 9697414
    • Baumann P, West SC (1998) Role of the human RAD51 protein in homologous recombination and dou-ble-stranded-break repair. Trends Biochem Sci 23: 247-251. PMID: 9697414
    • (1998) Trends Biochem Sci , vol.23 , pp. 247-251
    • Baumann, P.1    West, S.C.2
  • 11
    • 84864185989 scopus 로고    scopus 로고
    • Inherited variation at chromosome 12p13.33, including RAD52, influences the risk of squamous cell lung carcinoma
    • PMID: 22585858
    • Shi J, Chatterjee N, Rotunno M, Wang Y, Pesatori AC, et al. (2012) Inherited variation at chromosome 12p13.33, including RAD52, influences the risk of squamous cell lung carcinoma. Cancer Discov 2: 131-139. doi: 10.1158/2159-8290.CD-11-0246 PMID: 22585858
    • (2012) Cancer Discov , vol.2 , pp. 131-139
    • Shi, J.1    Chatterjee, N.2    Rotunno, M.3    Wang, Y.4    Pesatori, A.C.5
  • 12
    • 84868156549 scopus 로고    scopus 로고
    • Influence of common genetic variation on lung cancer risk: Meta-analysis of 14 900 cases and 29 485 controls
    • PMID: 22899653
    • Timofeeva MN, Hung RJ, Rafnar T, Christiani DC, Field JK, et al. (2012) Influence of common genetic variation on lung cancer risk: meta-analysis of 14 900 cases and 29 485 controls. Hum Mol Genet 21: 4980-4995. doi: 10.1093/hmg/dds334 PMID: 22899653
    • (2012) Hum Mol Genet , vol.21 , pp. 4980-4995
    • Timofeeva, M.N.1    Hung, R.J.2    Rafnar, T.3    Christiani, D.C.4    Field, J.K.5
  • 13
    • 84859129773 scopus 로고    scopus 로고
    • Squamous cell carcinoma-similarities and differences among anatomical sites
    • PMID: 21938273
    • Yan W, Wistuba II, Emmert-Buck MR, Erickson HS (2011) Squamous Cell Carcinoma-Similarities and Differences among Anatomical Sites. Am J Cancer Res 1: 275-300. PMID: 21938273
    • (2011) Am J Cancer Res , vol.1 , pp. 275-300
    • Yan, W.1    Wistuba, I.I.2    Emmert-Buck, M.R.3    Erickson, H.S.4
  • 14
    • 84895533290 scopus 로고    scopus 로고
    • Genetic variants in nicotine addiction and alcohol metabolism genes, oral cancer risk and the propensity to smoke and drink alcohol: A replication study in India
    • PMID: 24505444
    • Anantharaman D, Chabrier A, Gaborieau V, Franceschi S, Herrero R, et al. (2014) Genetic variants in nicotine addiction and alcohol metabolism genes, oral cancer risk and the propensity to smoke and drink alcohol: a replication study in India. PLoS One 9: e88240. doi: 10.1371/journal.pone.0088240 PMID: 24505444
    • (2014) PLoS One , vol.9 , pp. e88240
    • Anantharaman, D.1    Chabrier, A.2    Gaborieau, V.3    Franceschi, S.4    Herrero, R.5
  • 15
    • 77954850538 scopus 로고    scopus 로고
    • Comparison between self-reported facial flushing after alcohol consumption and ALDH2 Glu504Lys polymorphism for risk of upper aerodigestive tract cancer in a Japanese population
    • PMID: 20518787
    • Oze I, Matsuo K, Hosono S, Ito H, Kawase T, et al. (2010) Comparison between self-reported facial flushing after alcohol consumption and ALDH2 Glu504Lys polymorphism for risk of upper aerodigestive tract cancer in a Japanese population. Cancer Sci 101: 1875-1880. doi: 10.1111/j.1349-7006.2010. 01599.x PMID: 20518787
    • (2010) Cancer Sci , vol.101 , pp. 1875-1880
    • Oze, I.1    Matsuo, K.2    Hosono, S.3    Ito, H.4    Kawase, T.5
  • 16
    • 0043122919 scopus 로고    scopus 로고
    • SIFT: Predicting amino acid changes that affect protein function
    • PMID: 12824425
    • Ng PC, Henikoff S (2003) SIFT: Predicting amino acid changes that affect protein function. Nucleic Acids Res 31: 3812-3814. PMID: 12824425
    • (2003) Nucleic Acids Res , vol.31 , pp. 3812-3814
    • Ng, P.C.1    Henikoff, S.2
  • 17
    • 77951640946 scopus 로고    scopus 로고
    • A method and server for predicting damaging missense mutations
    • PMID: 20354512
    • Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, et al. (2010) A method and server for predicting damaging missense mutations. Nat Methods 7: 248-249. doi: 10.1038/nmeth0410-248 PMID: 20354512
    • (2010) Nat Methods , vol.7 , pp. 248-249
    • Adzhubei, I.A.1    Schmidt, S.2    Peshkin, L.3    Ramensky, V.E.4    Gerasimova, A.5
  • 19
    • 78649475003 scopus 로고    scopus 로고
    • Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis
    • Du P, Zhang X, Huang CC, Jafari N, Kibbe WA, et al. (2010) Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis. BMC Bioinformatics (11:) : 587.
    • (2010) BMC Bioinformatics , Issue.11 , pp. 587
    • Du, P.1    Zhang, X.2    Huang, C.C.3    Jafari, N.4    Kibbe, W.A.5
  • 20
    • 33746512512 scopus 로고    scopus 로고
    • Principal components analysis corrects for stratification in genome-wide association studies
    • PMID: 16862161
    • Price AL, Patterson NJ, Plenge RM, Weinblatt ME, Shadick NA, et al. (2006) Principal components analysis corrects for stratification in genome-wide association studies. Nat Genet 38: 904-909. PMID: 16862161
    • (2006) Nat Genet , vol.38 , pp. 904-909
    • Price, A.L.1    Patterson, N.J.2    Plenge, R.M.3    Weinblatt, M.E.4    Shadick, N.A.5
  • 21
    • 49749122987 scopus 로고    scopus 로고
    • Population substructure and control selection in genome-wide association studies
    • PMID: 18596976
    • Yu K, Wang Z, Li Q, Wacholder S, Hunter DJ, et al. (2008) Population substructure and control selection in genome-wide association studies. PLoS One 3: e2551. doi: 10.1371/journal.pone.0002551 PMID: 18596976
    • (2008) PLoS One , vol.3 , pp. e2551
    • Yu, K.1    Wang, Z.2    Li, Q.3    Wacholder, S.4    Hunter, D.J.5
  • 22
    • 84873288058 scopus 로고    scopus 로고
    • Integrative eQTL-based analyses reveal the biology of breast cancer risk loci
    • PMID: 23374354
    • Li Q, Seo JH, Stranger B, McKenna A, Pe'er I, et al. (2013) Integrative eQTL-based analyses reveal the biology of breast cancer risk loci. Cell 152: 633-641. doi: 10.1016/j.cell.2012.12.034 PMID: 23374354
    • (2013) Cell , vol.152 , pp. 633-641
    • Li, Q.1    Seo, J.H.2    Stranger, B.3    McKenna, A.4    Pe'Er, I.5
  • 23
    • 33846978695 scopus 로고    scopus 로고
    • Relative impact of nucleotide and copy number variation on gene expression phenotypes
    • PMID: 17289997
    • Stranger BE, Forrest MS, Dunning M, Ingle CE, Beazley C, et al. (2007) Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science 315: 848-853. PMID: 17289997
    • (2007) Science , vol.315 , pp. 848-853
    • Stranger, B.E.1    Forrest, M.S.2    Dunning, M.3    Ingle, C.E.4    Beazley, C.5
  • 24
    • 77957970301 scopus 로고    scopus 로고
    • Epigenetic modifications and human disease
    • PMID: 20944598
    • Portela A, Esteller M (2010) Epigenetic modifications and human disease. Nat Biotechnol 28: 1057-1068. doi: 10.1038/nbt.1685 PMID: 20944598
    • (2010) Nat Biotechnol , vol.28 , pp. 1057-1068
    • Portela, A.1    Esteller, M.2
  • 25
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • PMID: 10835412
    • Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959. PMID: 10835412
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 26
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • PMID: 17943122
    • Frazer KA, Ballinger DG, Cox DR, Hinds DA, Stuve LL, et al. (2007) A second generation human haplotype map of over 3.1 million SNPs. Nature 449: 851-861. PMID: 17943122
    • (2007) Nature , vol.449 , pp. 851-861
    • Frazer, K.A.1    Ballinger, D.G.2    Cox, D.R.3    Hinds, D.A.4    Stuve, L.L.5
  • 27
    • 38049100456 scopus 로고    scopus 로고
    • Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma
    • PMID: 18077431
    • Beroukhim R, Getz G, Nghiemphu L, Barretina J, Hsueh T, et al. (2007) Assessing the significance of chromosomal aberrations in cancer: methodology and application to glioma. Proc Natl Acad Sci U S A 104: 20007-20012. PMID: 18077431
    • (2007) Proc Natl Acad Sci U S a , vol.104 , pp. 20007-20012
    • Beroukhim, R.1    Getz, G.2    Nghiemphu, L.3    Barretina, J.4    Hsueh, T.5
  • 28
    • 79955166265 scopus 로고    scopus 로고
    • GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers
    • PMID: 21527027
    • Mermel CH, Schumacher SE, Hill B, Meyerson ML, Beroukhim R, et al. (2011) GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers. Genome Biol 12: R41. doi: 10.1186/gb-2011-12-4-r41 PMID: 21527027
    • (2011) Genome Biol , vol.12 , pp. R41
    • Mermel, C.H.1    Schumacher, S.E.2    Hill, B.3    Meyerson, M.L.4    Beroukhim, R.5
  • 29
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • PMID: 18516045
    • Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5: 621-628. doi: 10.1038/nmeth.1226 PMID: 18516045
    • (2008) Nat Methods , vol.5 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 30
    • 77953176036 scopus 로고    scopus 로고
    • A scaling normalization method for differential expression analysis of RNA-seq data
    • PMID: 20196867
    • Robinson MD, Oshlack A (2010) A scaling normalization method for differential expression analysis of RNA-seq data. Genome Biol 11: R25. doi: 10.1186/gb-2010-11-3-r25 PMID: 20196867
    • (2010) Genome Biol , vol.11 , pp. R25
    • Robinson, M.D.1    Oshlack, A.2
  • 31
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
    • PMID: 19910308
    • Robinson MD, McCarthy DJ, Smyth GK (2010) edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26: 139-140. doi: 10.1093/bioinformatics/ btp616 PMID: 19910308
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 32
    • 33644872577 scopus 로고    scopus 로고
    • Bioinformatics and computational biology solutions using R and bioconductor
    • W. Huber, R. Irizarry, S. Dudoit
    • Smyth G (2005) Bioinformatics and Computational Biology Solutions Using R and Bioconductor. In: R Gentleman VC, W. Huber, R. Irizarry, S. Dudoit editor. pp. 397-420.
    • (2005) R Gentleman VC , pp. 397-420
    • Smyth, G.1
  • 33
    • 0036900120 scopus 로고    scopus 로고
    • Role of RAD52 epistasis group genes in homologous recombination and doublestrand break repair
    • table of contents. PMID: 12456786
    • Symington LS (2002) Role of RAD52 epistasis group genes in homologous recombination and doublestrand break repair. Microbiol Mol Biol Rev 66: 630-670, table of contents. PMID: 12456786
    • (2002) Microbiol Mol Biol Rev , vol.66 , pp. 630-670
    • Symington, L.S.1
  • 34
    • 84870379165 scopus 로고    scopus 로고
    • Molecular pathways: Understanding the role of Rad52 in homologous recombination for therapeutic advancement
    • PMID: 23071261
    • Lok BH, Powell SN (2012) Molecular pathways: understanding the role of Rad52 in homologous recombination for therapeutic advancement. Clin Cancer Res 18: 6400-6406. doi: 10.1158/1078-0432.CCR-11-3150 PMID: 23071261
    • (2012) Clin Cancer Res , vol.18 , pp. 6400-6406
    • Lok, B.H.1    Powell, S.N.2
  • 35
    • 84880917274 scopus 로고    scopus 로고
    • RAD52 inactivation is synthetically lethal with deficiencies in BRCA1 and PALB2 in addition to BRCA2 through RAD51-mediated homologous recombination
    • PMID: 22964643
    • Lok BH, Carley AC, Tchang B, Powell SN (2013) RAD52 inactivation is synthetically lethal with deficiencies in BRCA1 and PALB2 in addition to BRCA2 through RAD51-mediated homologous recombination. Oncogene 32: 3552-3558. doi: 10.1038/onc.2012.391 PMID: 22964643
    • (2013) Oncogene , vol.32 , pp. 3552-3558
    • Lok, B.H.1    Carley, A.C.2    Tchang, B.3    Powell, S.N.4
  • 36
    • 79551658805 scopus 로고    scopus 로고
    • Rad52 inactivation is synthetically lethal with BRCA2 deficiency
    • PMID: 21148102
    • Feng Z, Scott SP, Bussen W, Sharma GG, Guo G, et al. (2011) Rad52 inactivation is synthetically lethal with BRCA2 deficiency. Proc Natl Acad Sci U S A 108: 686-691. doi: 10.1073/pnas.1010959107 PMID: 21148102
    • (2011) Proc Natl Acad Sci u S a , vol.108 , pp. 686-691
    • Feng, Z.1    Scott, S.P.2    Bussen, W.3    Sharma, G.G.4    Guo, G.5
  • 37
    • 84887156264 scopus 로고    scopus 로고
    • Personalized synthetic lethality induced by targeting RAD52 in leukemias identified by gene mutation and expression profile
    • PMID: 23836560
    • Cramer-Morales K, Nieborowska-Skorska M, Scheibner K, Padget M, Irvine DA, et al. (2013) Personalized synthetic lethality induced by targeting RAD52 in leukemias identified by gene mutation and expression profile. Blood 122: 1293-1304. doi: 10.1182/blood-2013-05-501072 PMID: 23836560
    • (2013) Blood , vol.122 , pp. 1293-1304
    • Cramer-Morales, K.1    Nieborowska-Skorska, M.2    Scheibner, K.3    Padget, M.4    Irvine, D.A.5
  • 38
    • 84903585835 scopus 로고    scopus 로고
    • Rare variants of large effect in BRCA2 and CHEK2 affect risk of lung cancer
    • PMID: 24880342
    • Wang Y, McKay JD, Rafnar T, Wang Z, Timofeeva MN, et al. (2014) Rare variants of large effect in BRCA2 and CHEK2 affect risk of lung cancer. Nat Genet 46: 736-741. doi: 10.1038/ng.3002 PMID: 24880342
    • (2014) Nat Genet , vol.46 , pp. 736-741
    • Wang, Y.1    McKay, J.D.2    Rafnar, T.3    Wang, Z.4    Timofeeva, M.N.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.