-
1
-
-
0037372003
-
Epigenetic regulation of gene expression: How the genome integrates intrinsic and environmental signals
-
Jaenisch, R. & Bird, A. Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals. Nat. Genet. 33, 245-254 (2003
-
(2003)
Nat. Genet
, vol.33
, pp. 245-254
-
-
Jaenisch, R.1
Bird, A.2
-
2
-
-
0035234557
-
Genomic imprinting: Parental influence on the genome
-
Reik, W. & Walter, J. Genomic imprinting: parental influence on the genome. Nat. Rev. Genet. 2, 21-32 (2001
-
(2001)
Nat. Rev. Genet
, vol.2
, pp. 21-32
-
-
Reik, W.1
Walter, J.2
-
3
-
-
15744401773
-
Eukaryotic cytosine methyltransferases
-
Goll, M.G. & Bestor, T.H. Eukaryotic cytosine methyltransferases. Annu. Rev. Biochem. 74, 481-514 (2005
-
(2005)
Annu. Rev. Biochem
, vol.74
, pp. 481-514
-
-
Goll, M.G.1
Bestor, T.H.2
-
4
-
-
84898892512
-
Dna methylation dynamics during epigenetic reprogramming in the germline and preimplantation embryos
-
Messerschmidt, D.M., Knowles, B.B. & Solter, D. DNA methylation dynamics during epigenetic reprogramming in the germline and preimplantation embryos. Genes Dev. 28, 812-828 (2014
-
(2014)
Genes Dev
, vol.28
, pp. 812-828
-
-
Messerschmidt, D.M.1
Knowles, B.B.2
Solter, D.3
-
5
-
-
79960926264
-
Dynamic cpg island methylation landscape in oocytes and preimplantation embryos
-
Smallwood, S.A. et al. Dynamic CpG island methylation landscape in oocytes and preimplantation embryos. Nat. Genet. 43, 811-814 (2011
-
(2011)
Nat. Genet
, vol.43
, pp. 811-814
-
-
Smallwood, S.A.1
-
6
-
-
0036145567
-
Dynamic reprogramming of dna methylation in the early mouse embryo
-
Santos, F., Hendrich, B., Reik, W. & Dean, W. Dynamic reprogramming of DNA methylation in the early mouse embryo. Dev. Biol. 241, 172-182 (2002
-
(2002)
Dev. Biol
, vol.241
, pp. 172-182
-
-
Santos, F.1
Hendrich, B.2
Reik, W.3
Dean, W.4
-
7
-
-
84859910536
-
A unique regulatory phase of dna methylation in the early mammalian embryo
-
Smith, Z.D. et al. A unique regulatory phase of DNA methylation in the early mammalian embryo. Nature 484, 339-344 (2012
-
(2012)
Nature
, vol.484
, pp. 339-344
-
-
Smith, Z.D.1
-
8
-
-
70450217879
-
Human dna methylomes at base resolution show widespread epigenomic differences
-
Lister, R. et al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 462, 315-322 (2009
-
(2009)
Nature
, vol.462
, pp. 315-322
-
-
Lister, R.1
-
9
-
-
77957937011
-
Quantitative comparison of genome-wide dna methylation mapping technologies
-
Bock, C. et al. Quantitative comparison of genome-wide DNA methylation mapping technologies. Nat. Biotechnol. 28, 1106-1114 (2010
-
(2010)
Nat. Biotechnol
, vol.28
, pp. 1106-1114
-
-
Bock, C.1
-
10
-
-
0026546877
-
A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual dna strands
-
Frommer, M. et al. A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc. Natl. Acad. Sci. USA 89, 1827-1831 (1992
-
(1992)
Proc. Natl. Acad. Sci. USA
, vol.89
, pp. 1827-1831
-
-
Frommer, M.1
-
11
-
-
33751505540
-
Dna methylation profiling of human chromosomes 6 20 and 22
-
Eckhardt, F. et al. DNA methylation profiling of human chromosomes 6, 20 and 22. Nat. Genet. 38, 1378-1385 (2006
-
(2006)
Nat. Genet
, vol.38
, pp. 1378-1385
-
-
Eckhardt, F.1
-
12
-
-
49649125042
-
Genome-scale dna methylation maps of pluripotent and differentiated cells
-
Meissner, A. et al. Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature 454, 766-770 (2008
-
(2008)
Nature
, vol.454
, pp. 766-770
-
-
Meissner, A.1
-
13
-
-
0038678777
-
Sensitive and quantitative universal pyrosequencing methylation analysis of cpg sites
-
Colella, S., Shen, L., Baggerly, K.A., Issa, J.P.J. & Krahe, R. Sensitive and quantitative universal Pyrosequencing methylation analysis of CpG sites. Biotechniques 35, 146-151 (2003
-
(2003)
Biotechniques
, vol.35
, pp. 146-151
-
-
Colella, S.1
Shen, L.2
Baggerly, K.A.3
Issa, J.P.J.4
Krahe, R.5
-
14
-
-
0029843950
-
Methylation-specific pcr: A novel pcr assay for methylation status of cpg islands
-
Herman, J.G., Graff, J.R., Myöhänen, S., Nelkin, B.D. & Baylin, S.B. Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands. Proc. Natl. Acad. Sci. USA 93, 9821-9826 (1996
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 9821-9826
-
-
Herman, J.G.1
Graff, J.R.2
Myöhänen, S.3
Nelkin, B.D.4
Baylin, S.B.5
-
15
-
-
0030825309
-
Cobra: A sensitive and quantitative dna methylation assay
-
Xiong, Z. & Laird, P.W. COBRA: a sensitive and quantitative DNA methylation assay. Nucleic Acids Res. 25, 2532-2534 (1997
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 2532-2534
-
-
Xiong, Z.1
Laird, P.W.2
-
16
-
-
0034654669
-
Methylight: A high-Throughput assay to measure dna methylation
-
Eads, C.A. et al. MethyLight: a high-Throughput assay to measure DNA methylation. Nucleic Acids Res. 28, e32 (2000
-
(2000)
Nucleic Acids Res
, vol.28
, pp. e32
-
-
Eads, C.A.1
-
17
-
-
27644548948
-
Quantitative high-Throughput analysis of dna methylation patterns by base-specific cleavage and mass spectrometry
-
Ehrich, M. et al. Quantitative high-Throughput analysis of DNA methylation patterns by base-specific cleavage and mass spectrometry. Proc. Natl. Acad. Sci. USA 102, 15785-15790 (2005
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 15785-15790
-
-
Ehrich, M.1
-
18
-
-
33644649616
-
High-Throughput dna methylation profiling using universal bead arrays
-
Bibikova, M. et al. High-Throughput DNA methylation profiling using universal bead arrays. Genome Res. 16, 383-393 (2006
-
(2006)
Genome Res
, vol.16
, pp. 383-393
-
-
Bibikova, M.1
-
19
-
-
23044514626
-
Chromosome-wide and promoter-specific analyses identify sites of differential dna methylation in normal and transformed human cells
-
Weber, M. et al. Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat. Genet. 37, 853-862 (2005
-
(2005)
Nat. Genet
, vol.37
, pp. 853-862
-
-
Weber, M.1
-
20
-
-
46949098742
-
A bayesian deconvolution strategy for immunoprecipitation-based dna methylome analysis
-
Down, T.A. et al. A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis. Nat. Biotechnol. 26, 779-785 (2008
-
(2008)
Nat. Biotechnol
, vol.26
, pp. 779-785
-
-
Down, T.A.1
-
21
-
-
33746756014
-
Comparative isoschizomer profiling of cytosine methylation: The help assay
-
Khulan, B. et al. Comparative isoschizomer profiling of cytosine methylation: the HELP assay. Genome Res. 16, 1046-1055 (2006
-
(2006)
Genome Res
, vol.16
, pp. 1046-1055
-
-
Khulan, B.1
-
22
-
-
23944496395
-
Msre-pcr for analysis of gene-specific dna methylation
-
Melnikov, A.A., Gartenhaus, R.B., Levenson, A.S., Motchoulskaia, N.A. & Levenson, V.V. MSRE-PCR for analysis of gene-specific DNA methylation. Nucleic Acids Res. 33, e93 (2005
-
(2005)
Nucleic Acids Res
, vol.33
, pp. e93
-
-
Melnikov, A.A.1
Gartenhaus, R.B.2
Levenson, A.S.3
Motchoulskaia, N.A.4
Levenson, V.V.5
-
23
-
-
33846107211
-
Evaluation of a quantitative dna methylation analysis technique using methylation-sensitive/dependent restriction enzymes and real-Time pcr
-
Oakes, C.C., La Salle, S., Robaire, B. & Trasler, J.M. Evaluation of a quantitative DNA methylation analysis technique using methylation-sensitive/dependent restriction enzymes and real-Time PCR. Epigenetics 1, 146-152 (2006
-
(2006)
Epigenetics
, vol.1
, pp. 146-152
-
-
Oakes, C.C.1
La Salle, S.2
Robaire, B.3
Trasler, J.M.4
-
24
-
-
84890526238
-
Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing
-
Guo, H. et al. Single-cell methylome landscapes of mouse embryonic stem cells and early embryos analyzed using reduced representation bisulfite sequencing. Genome Res. 23, 2126-2135 (2013
-
(2013)
Genome Res
, vol.23
, pp. 2126-2135
-
-
Guo, H.1
-
25
-
-
84905405443
-
Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
-
Smallwood, S.A. et al. Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity. Nat. Methods 11, 817-820 (2014
-
(2014)
Nat. Methods
, vol.11
, pp. 817-820
-
-
Smallwood, S.A.1
-
26
-
-
84905030212
-
The dna methylation landscape of human early embryos
-
Guo, H. et al. The DNA methylation landscape of human early embryos. Nature 511, 606-610 (2014
-
(2014)
Nature
, vol.511
, pp. 606-610
-
-
Guo, H.1
-
27
-
-
80053454869
-
Limiting dilution bisulfite (pyro) sequencing reveals parent-specific methylation patterns in single early mouse embryos and bovine oocytes
-
El Hajj, N. et al. Limiting dilution bisulfite (pyro) sequencing reveals parent-specific methylation patterns in single early mouse embryos and bovine oocytes. Epigenetics 6, 1176-1188 (2011
-
(2011)
Epigenetics
, vol.6
, pp. 1176-1188
-
-
El Hajj, N.1
-
28
-
-
84873383204
-
Detection of histone modifications at specific gene loci in single cells in histological sections
-
Gomez, D., Shankman, L.S., Nguyen, A.T. & Owens, G.K. Detection of histone modifications at specific gene loci in single cells in histological sections. Nat. Methods 10, 171-177 (2013
-
(2013)
Nat. Methods
, vol.10
, pp. 171-177
-
-
Gomez, D.1
Shankman, L.S.2
Nguyen, A.T.3
Owens, G.K.4
-
29
-
-
84883474570
-
Single-cell dna-methylation analysis reveals epigenetic chimerism in preimplantation embryos
-
Lorthongpanich, C. et al. Single-cell DNA-methylation analysis reveals epigenetic chimerism in preimplantation embryos. Science 341, 1110-1112 (2013
-
(2013)
Science
, vol.341
, pp. 1110-1112
-
-
Lorthongpanich, C.1
-
30
-
-
79954614277
-
A high-Throughput dna methylation analysis of a single cell
-
Kantlehner, M. et al. A high-Throughput DNA methylation analysis of a single cell. Nucleic Acids Res. 39, e44 (2011
-
(2011)
Nucleic Acids Res
, vol.39
, pp. e44
-
-
Kantlehner, M.1
-
31
-
-
79960530899
-
Genomic imprinting: The emergence of an epigenetic paradigm
-
Ferguson-Smith, A.C. Genomic imprinting: the emergence of an epigenetic paradigm. Nat. Rev. Genet. 12, 565-575 (2011
-
(2011)
Nat. Rev. Genet
, vol.12
, pp. 565-575
-
-
Ferguson-Smith, A.C.1
-
32
-
-
2442424419
-
Germline epimutation of mlh1 in individuals with multiple cancers
-
Suter, C.M., Martin, D.I. & Ward, R.L. Germline epimutation of MLH1 in individuals with multiple cancers. Nat. Genet. 36, 497-501 (2004
-
(2004)
Nat. Genet
, vol.36
, pp. 497-501
-
-
Suter, C.M.1
Martin, D.I.2
Ward, R.L.3
-
33
-
-
2442505031
-
Preimplantation genetic diagnosis
-
Sermon, K., Van Steirteghem, A. & Liebaers, I. Preimplantation genetic diagnosis. Lancet 363, 1633-1641 (2004
-
(2004)
Lancet
, vol.363
, pp. 1633-1641
-
-
Sermon, K.1
Van Steirteghem, A.2
Liebaers, I.3
-
34
-
-
84871194526
-
Evaluation of single cpg sites as proxies of cpg island methylation states at the genome scale
-
Barrera, V. & Peinado, M.A. Evaluation of single CpG sites as proxies of CpG island methylation states at the genome scale. Nucleic Acids Res. 40, 11490-11498 (2012
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 11490-11498
-
-
Barrera, V.1
Peinado, M.A.2
-
35
-
-
79960927422
-
Increased methylation variation in epigenetic domains across cancer types
-
Hansen, K.D. et al. Increased methylation variation in epigenetic domains across cancer types. Nat. Genet. 43, 768-775 (2011
-
(2011)
Nat. Genet
, vol.43
, pp. 768-775
-
-
Hansen, K.D.1
-
36
-
-
68149170798
-
Resolving cell population heterogeneity: Real-Time pcr for simultaneous multiplexed gene detection in multiple single-cell samples
-
Diercks, A., Kostner, H. & Ozinsky, A. Resolving cell population heterogeneity: real-Time PCR for simultaneous multiplexed gene detection in multiple single-cell samples. PLoS ONE 4, e6326 (2009
-
(2009)
PLoS ONE
, vol.4
, pp. e6326
-
-
Diercks, A.1
Kostner, H.2
Ozinsky, A.3
-
37
-
-
75549086595
-
Rebase-A database for dna restriction and modification: Enzymes, genes and genomes
-
Roberts, R.J., Vincze, T., Posfai, J. & Macelis, D. REBASE-A database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids Res. 38, D234-D236 (2010
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D234-D236
-
-
Roberts, R.J.1
Vincze, T.2
Posfai, J.3
MacElis, D.4
-
38
-
-
6344291988
-
Quantification of multiple gene expression in individual cells
-
Peixoto, A., Monteiro, M., Rocha, B. & Veiga-Fernandes, H. Quantification of multiple gene expression in individual cells. Genome Res. 14, 1938-1947 (2004
-
(2004)
Genome Res
, vol.14
, pp. 1938-1947
-
-
Peixoto, A.1
Monteiro, M.2
Rocha, B.3
Veiga-Fernandes, H.4
-
39
-
-
84859602728
-
Microfluidic single-cell real-Time pcr for comparative analysis of gene expression patterns
-
Sanchez-Freire, V., Ebert, A.D., Kalisky, T., Quake, S.R. & Wu, J.C. Microfluidic single-cell real-Time PCR for comparative analysis of gene expression patterns. Nat. Protoc. 7, 829-838 (2012
-
(2012)
Nat. Protoc
, vol.7
, pp. 829-838
-
-
Sanchez-Freire, V.1
Ebert, A.D.2
Kalisky, T.3
Quake, S.R.4
Wu, J.C.5
-
41
-
-
84856468378
-
Microfluidics for single cell analysis
-
Yin, H. & Marshall, D. Microfluidics for single cell analysis. Curr. Opin. Biotechnol. 23, 110-119 (2012
-
(2012)
Curr. Opin. Biotechnol
, vol.23
, pp. 110-119
-
-
Yin, H.1
Marshall, D.2
-
42
-
-
0012315579
-
-
Cold Spring Harbor Laboratory Press
-
Nagy, A., Gertsenstein, M., Vintersten, K. & Behringer, R. Manipulating the Mouse Embryo: a Laboratory Manual (Cold Spring Harbor Laboratory Press, 2003
-
(2003)
Manipulating the Mouse Embryo: A Laboratory Manual
-
-
Nagy, A.1
Gertsenstein, M.2
Vintersten, K.3
Behringer, R.4
-
43
-
-
0033006231
-
Laser capture microdissection of single cells from complex tissues
-
Suarez-Quian, C.A. et al. Laser capture microdissection of single cells from complex tissues. Biotechniques 26, 328-335 (1999
-
(1999)
Biotechniques
, vol.26
, pp. 328-335
-
-
Suarez-Quian, C.A.1
|