메뉴 건너뛰기




Volumn 26, Issue 6, 2015, Pages 705-708

Recognizing parallel-stranded G-quadruplex by cyanine dye dimer based on dual-site binding mode

Author keywords

c myc; Cyanine dye; Dual site binding mode; Parallel stranded G quadruplex

Indexed keywords


EID: 84925780278     PISSN: 10018417     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cclet.2015.02.002     Document Type: Article
Times cited : (9)

References (31)
  • 1
    • 0037015078 scopus 로고    scopus 로고
    • Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription
    • A. Siddiqui-Jain, C.L. Grand, D.J. Bearss, and L.H. Hurley Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription Proc. Natl. Acad. Sci. U. S. A. 99 2002 11593 11598
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 11593-11598
    • Siddiqui-Jain, A.1    Grand, C.L.2    Bearss, D.J.3    Hurley, L.H.4
  • 2
    • 1042268168 scopus 로고    scopus 로고
    • G-quartets 40 years later: from 5′-GMP to molecular biology and supramolecular chemistry
    • J.T. Davis G-quartets 40 years later: from 5′-GMP to molecular biology and supramolecular chemistry Angew. Chem. Int. Ed. 43 2004 668 698
    • (2004) Angew. Chem. Int. Ed. , vol.43 , pp. 668-698
    • Davis, J.T.1
  • 5
    • 0024787884 scopus 로고
    • Monovalent cation-induced structure of telomeric DNA: the G-quartet model
    • J.R. Williamson, M.K. Raghuraman, and T.R. Cech Monovalent cation-induced structure of telomeric DNA: the G-quartet model Cell 59 1989 871 880
    • (1989) Cell , vol.59 , pp. 871-880
    • Williamson, J.R.1    Raghuraman, M.K.2    Cech, T.R.3
  • 6
    • 33846928449 scopus 로고    scopus 로고
    • G-quadruplexes in promoters throughout the human genome
    • J.L. Huppert, and S. Balasubramanian G-quadruplexes in promoters throughout the human genome Nucleic Acids Res. 35 2007 406 413
    • (2007) Nucleic Acids Res. , vol.35 , pp. 406-413
    • Huppert, J.L.1    Balasubramanian, S.2
  • 7
    • 81455140677 scopus 로고    scopus 로고
    • The application of DNA and RNA G-quadruplexes to therapeutic medicines
    • G.W. Collie, and G.N. Parkinson The application of DNA and RNA G-quadruplexes to therapeutic medicines Chem. Soc. Rev. 40 2011 5867 5892
    • (2011) Chem. Soc. Rev. , vol.40 , pp. 5867-5892
    • Collie, G.W.1    Parkinson, G.N.2
  • 8
    • 61849170513 scopus 로고    scopus 로고
    • Verification of specific G-quadruplex structure by using a novel cyanine dye supramolecular assembly: I. Recognizing mixed G-quadruplex in human telomeres
    • Q.F. Yang, J.F. Xiang, S. Yang, and et al. Verification of specific G-quadruplex structure by using a novel cyanine dye supramolecular assembly: I. Recognizing mixed G-quadruplex in human telomeres Chem. Commun. 2009 1103 1105
    • (2009) Chem. Commun. , pp. 1103-1105
    • Yang, Q.F.1    Xiang, J.F.2    Yang, S.3
  • 9
    • 77950367232 scopus 로고    scopus 로고
    • Verification of specific G-quadruplex structure by using a novel cyanine dye supramolecular assembly: II. The binding characterization with specific intramolecular G-quadruplex and the recognizing mechanism
    • Q.F. Yang, J.F. Xiang, S. Yang, and et al. Verification of specific G-quadruplex structure by using a novel cyanine dye supramolecular assembly: II. The binding characterization with specific intramolecular G-quadruplex and the recognizing mechanism Nucleic Acids Res. 38 2010 1022 1033
    • (2010) Nucleic Acids Res. , vol.38 , pp. 1022-1033
    • Yang, Q.F.1    Xiang, J.F.2    Yang, S.3
  • 11
    • 78449280429 scopus 로고    scopus 로고
    • Verification of intramolecular hybrid/parallel G-quadruplex structure under physiological conditions using novel cyanine dye H-aggregates: both in solution and on Au film
    • Q.F. Yang, J.F. Xiang, S. Yang, and et al. Verification of intramolecular hybrid/parallel G-quadruplex structure under physiological conditions using novel cyanine dye H-aggregates: both in solution and on Au film Anal. Chem. 82 2010 9135 9137
    • (2010) Anal. Chem. , vol.82 , pp. 9135-9137
    • Yang, Q.F.1    Xiang, J.F.2    Yang, S.3
  • 12
    • 47649119769 scopus 로고    scopus 로고
    • Targeting DNA quadruplexes with distamycin A and its derivatives: an ITC and NMR study
    • B. Pagano, A. Virno, C.A. Mattia, and et al. Targeting DNA quadruplexes with distamycin A and its derivatives: an ITC and NMR study Biochimie 90 2008 1224 1232
    • (2008) Biochimie , vol.90 , pp. 1224-1232
    • Pagano, B.1    Virno, A.2    Mattia, C.A.3
  • 13
    • 33745170102 scopus 로고    scopus 로고
    • Dinuclear monointercalating RuII complexes that display high affinity binding to duplex and quadruplex DNA
    • C. Rajput, R. Rutkaite, L. Swanson, I. Haq, and J.A. Thomas Dinuclear monointercalating RuII complexes that display high affinity binding to duplex and quadruplex DNA Chemistry 12 2006 4611 4619
    • (2006) Chemistry , vol.12 , pp. 4611-4619
    • Rajput, C.1    Rutkaite, R.2    Swanson, L.3    Haq, I.4    Thomas, J.A.5
  • 14
    • 77952618536 scopus 로고    scopus 로고
    • Differentiating quadruplexes: binding preferences of a luminescent dinuclear ruthenium(II) complex with four-stranded DNA structures
    • T. Wilson, M.P. Williamson, and J.A. Thomas Differentiating quadruplexes: binding preferences of a luminescent dinuclear ruthenium(II) complex with four-stranded DNA structures Org. Biomol. Chem. 8 2010 2617 2621
    • (2010) Org. Biomol. Chem. , vol.8 , pp. 2617-2621
    • Wilson, T.1    Williamson, M.P.2    Thomas, J.A.3
  • 15
    • 84855761960 scopus 로고    scopus 로고
    • Disubstituted quinazoline derivatives as a new type of highly selective ligands for telomeric G-quadruplex DNA
    • Z. Li, J.H. Tan, J.H. He, and et al. Disubstituted quinazoline derivatives as a new type of highly selective ligands for telomeric G-quadruplex DNA Eur. J. Med. Chem. 47 2012 299 311
    • (2012) Eur. J. Med. Chem. , vol.47 , pp. 299-311
    • Li, Z.1    Tan, J.H.2    He, J.H.3
  • 16
    • 84905649926 scopus 로고    scopus 로고
    • Synthesis of novel, azasugar-modified anthraquinone derivatives and their cytotoxicity
    • P.Z. Zhang, H.L. Yang, C.C. Li, and et al. Synthesis of novel, azasugar-modified anthraquinone derivatives and their cytotoxicity Chin. Chem. Lett. 25 2014 1057 1059
    • (2014) Chin. Chem. Lett. , vol.25 , pp. 1057-1059
    • Zhang, P.Z.1    Yang, H.L.2    Li, C.C.3
  • 17
    • 33846569026 scopus 로고    scopus 로고
    • Structure-specific recognition of quadruplex DNA by organic cations: influence of shape, substituents and charge
    • E.W. White, F. Tanious, M.A. Ismail, and et al. Structure-specific recognition of quadruplex DNA by organic cations: influence of shape, substituents and charge Biophys. Chem. 126 2007 140 153
    • (2007) Biophys. Chem. , vol.126 , pp. 140-153
    • White, E.W.1    Tanious, F.2    Ismail, M.A.3
  • 18
    • 77952017562 scopus 로고    scopus 로고
    • Structural and conformational requisites in DNA quadruplex groove binding: another piece to the puzzle
    • S. Cosconati, L. Marinelli, R. Trotta, and et al. Structural and conformational requisites in DNA quadruplex groove binding: another piece to the puzzle J. Am. Chem. Soc. 132 2010 6425 6433
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 6425-6433
    • Cosconati, S.1    Marinelli, L.2    Trotta, R.3
  • 19
    • 84876353426 scopus 로고    scopus 로고
    • A dual-site simultaneous binding mode in the interaction between parallel-stranded G-quadruplex [d(TGGGGT)]4 and cyanine dye 2,2′-diethyl-9-methyl-selenacarbocyanine bromide
    • W. Gai, Q.F. Yang, J.F. Xiang, and et al. A dual-site simultaneous binding mode in the interaction between parallel-stranded G-quadruplex [d(TGGGGT)]4 and cyanine dye 2,2′-diethyl-9-methyl-selenacarbocyanine bromide Nucleic Acids Res. 41 2013 2709 2722
    • (2013) Nucleic Acids Res. , vol.41 , pp. 2709-2722
    • Gai, W.1    Yang, Q.F.2    Xiang, J.F.3
  • 21
    • 0344788560 scopus 로고
    • Studies in the cyanine dye series: I. A new method of preparing certain carbocyanines
    • L.G.S. Brooker, and F.L. White Studies in the cyanine dye series: I. A new method of preparing certain carbocyanines J. Am. Chem. Soc. 57 1935 547 551
    • (1935) J. Am. Chem. Soc. , vol.57 , pp. 547-551
    • Brooker, L.G.S.1    White, F.L.2
  • 22
    • 0017556290 scopus 로고
    • Aggregation of sensitizing dyes in solution and their adsorption onto silver halides
    • A.H. Herz Aggregation of sensitizing dyes in solution and their adsorption onto silver halides Adv. Colloid Interface Sci. 8 1977 237 298
    • (1977) Adv. Colloid Interface Sci. , vol.8 , pp. 237-298
    • Herz, A.H.1
  • 23
    • 0016058293 scopus 로고
    • Dye-dye interactions of cyanines in solution and at AgBr surfaces
    • A.H. Herz Dye-dye interactions of cyanines in solution and at AgBr surfaces Photogr. Sci. Eng. 18 1974 323 335
    • (1974) Photogr. Sci. Eng. , vol.18 , pp. 323-335
    • Herz, A.H.1
  • 24
    • 0011116076 scopus 로고
    • Dimeric state of cyanine dyes
    • W. West, and S. Pearce Dimeric state of cyanine dyes J. Phys. Chem. 69 1965 1894 1903
    • (1965) J. Phys. Chem. , vol.69 , pp. 1894-1903
    • West, W.1    Pearce, S.2
  • 25
    • 0000065351 scopus 로고
    • Enhancement of phosphorescence ability upon aggregation of dye molecules
    • E.G. Mcrae, and M. Kasha Enhancement of phosphorescence ability upon aggregation of dye molecules J. Chem. Phys. 28 1958 721 722
    • (1958) J. Chem. Phys. , vol.28 , pp. 721-722
    • Mcrae, E.G.1    Kasha, M.2
  • 26
    • 0037123656 scopus 로고    scopus 로고
    • Photophysics of aggregated 9-methylthiacarbocyanine bound to polyanions
    • A.K. Chibisov, and H. Görner Photophysics of aggregated 9-methylthiacarbocyanine bound to polyanions Chem. Phys. Lett. 357 2002 434 439
    • (2002) Chem. Phys. Lett. , vol.357 , pp. 434-439
    • Chibisov, A.K.1    Görner, H.2
  • 27
    • 79961225356 scopus 로고    scopus 로고
    • Cy3 in AOT reverse micelles: I. Dimer formation revealed through steady-state and time-resolved spectroscopy
    • J.T. McPhee, E. Scott, N.E. Levinger, and A. Van Orden Cy3 in AOT reverse micelles: I. Dimer formation revealed through steady-state and time-resolved spectroscopy J. Phys. Chem. B 115 2011 9576 9584
    • (2011) J. Phys. Chem. B , vol.115 , pp. 9576-9584
    • McPhee, J.T.1    Scott, E.2    Levinger, N.E.3    Van Orden, A.4
  • 28
    • 0028024737 scopus 로고
    • The high-resolution crystal structure of a parallel-stranded guanine tetraplex
    • G. Laughlan, A.I. Murchie, D.G. Norman, and et al. The high-resolution crystal structure of a parallel-stranded guanine tetraplex Science 265 1994 520 524
    • (1994) Science , vol.265 , pp. 520-524
    • Laughlan, G.1    Murchie, A.I.2    Norman, D.G.3
  • 29
    • 0037142071 scopus 로고    scopus 로고
    • Crystal structure of parallel quadruplexes from human telomeric DNA
    • G.N. Parkinson, M.P.H. Lee, and S. Neidle Crystal structure of parallel quadruplexes from human telomeric DNA Nature 417 2002 876 880
    • (2002) Nature , vol.417 , pp. 876-880
    • Parkinson, G.N.1    Lee, M.P.H.2    Neidle, S.3
  • 31
    • 84864600748 scopus 로고    scopus 로고
    • Development of a universal colorimetric indicator for G-quadruplex structures by the fusion of thiazole orange and isaindigotone skeleton
    • J.W. Yan, W.J. Ye, S.B. Chen, and et al. Development of a universal colorimetric indicator for G-quadruplex structures by the fusion of thiazole orange and isaindigotone skeleton Anal. Chem. 84 2012 6288 6292
    • (2012) Anal. Chem. , vol.84 , pp. 6288-6292
    • Yan, J.W.1    Ye, W.J.2    Chen, S.B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.