Identification of quantitative trait loci controlling linolenic acid concentration in PI483463 (Glycine soja)

Theoretical and Applied Genetics

Volumn 127, Issue 7, 2014, Pages 1501-1512

  Ha, Bo Keun ^a,b   Kim, Hyun Jee ^c   Velusamy, Vijayan ^a   Vuong, Tri D ^d   Nguyen, Henry T ^d   Shannon, J Grover ^e   Lee, Jeong Dong ^c  

^a Korea Atomic Energy Research Institute   (South Korea)

^b Chonnam National University   (South Korea)

^c Kyungpook National University   (South Korea)

^d UNIVERSITY OF MISSOURI   (United States)

^e UNIVERSITY OF MISSOURI   (United States)

Author keywords

New QTLs for alpha linolenic acid were detected in wild soybean; The QTLs controlling alpha linolenic acid concentration from wild soybean were mapped on nine soybean chromosomes with various phenotypic variations

Indexed keywords

AMINO ACIDS; BIOMARKERS; CHROMOSOMES; MAPPING; PLANTS (BOTANY); POLYUNSATURATED FATTY ACIDS;

COMPOSITE INTERVAL MAPPING; MARKER-ASSISTED BREEDING; PHENOTYPIC VARIATIONS; QUANTITATIVE TRAIT LOCUS; RECOMBINANT INBRED LINES; SIMPLE SEQUENCE-REPEAT MARKERS; SINGLE-NUCLEOTIDE POLYMORPHISM MARKERS; WILD SOYBEAN;

FATTY ACIDS;

ANIMALIA; GLYCINE MAX; GLYCINE SOJA;

LINOLENIC ACID; MICROSATELLITE DNA; PLANT DNA;

BREEDING; CHROMOSOME MAP; GENETIC LINKAGE; GENETICS; GENOTYPE; METABOLISM; PHENOTYPE; PLANT CHROMOSOME; PLANT GENE; PLANT SEED; QUANTITATIVE TRAIT LOCUS; SINGLE NUCLEOTIDE POLYMORPHISM; SOYBEAN;

ALPHA-LINOLENIC ACID; BREEDING; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; DNA, PLANT; GENES, PLANT; GENETIC LINKAGE; GENOTYPE; MICROSATELLITE REPEATS; PHENOTYPE; POLYMORPHISM, SINGLE NUCLEOTIDE; QUANTITATIVE TRAIT LOCI; SEEDS; SOYBEANS;

EID: 84925555076     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-014-2314-y     Document Type: Article

References (56)

1. Alessandri JM, Guesnet P, Vancassel S, Astorg P, Denis I, Langelier B, Aïd S, Poumès-Ballihaut C, Champeil-Potokar G, Lavialle M (2004) Polyunsaturated fatty acids in the central nervous system: evolution of concepts and nutritional implications throughout life. Reprod Nutr Dev 44: 509-538.
2. Anai T, Yamada T, Kinoshita T, Rahman SM, Takagi Y (2005) Identification of corresponding genes for three low-[alpha]-linolenic acid mutants and elucidation of their contribution to fatty acid biosynthesis in soybean seed. Plant Sci 168: 1615-1623.
3. Asekova S, Chae JH, Ha BK, Dhakal KH, Chung GH, Shannon JG, Lee JD (2014) Stability of elevated α-linolenic acid derived from wild soybean (Glycine soja Sieb. & Zucc.) across environments. Euphytica 195: 409-418. doi: 10. 1007/s10681-013-1004-1.
4. Bilyeu KD, Palavalli L, Sleper DA, Beuselinck PR (2003) Three microsomal omega-3 fatty-acid desaturase genes contribute to soybean linolenic acid levels. Crop Sci 43: 1833-1838.
5. Bilyeu K, Palavalli L, Sleper D, Beuselinck P (2005) Mutations in soybean microsomal omega-3 fatty acid desaturase genes reduce linolenic acid concentration in soybean seeds. Crop Sci 45: 1830-1836.
6. Bilyeu K, Palavalli L, Sleper DA, Beuselinck P (2006) Molecular genetic resources for development of 1% linolenic acid soybeans. Crop Sci 46: 1913-1918.
7. Bilyeu K, Gillman JD, LeRoy AR (2011) Novel mutant allele combinations produce soybeans containing 1% linolenic acid in the seed oil. Crop Sci 51: 259-264.
8. Blasbalg TL, Hibbeln JR, Ramsden CE, Majchrzak SF, Rawlings RR (2011) Changes in consumption of omega-3 and omega-6 fatty acids in the United States during the 20th century. Am J Clin Nutr 93: 950-962.
9. Calder PC (2003) n-3 Polyunsaturated fatty acids and inflammation: from molecular biology to the clinic. Lipids 38: 343-352.
10. Calder PC (2004) n-3 Fatty acids and cardiovascular disease: evidence explained and mechanisms explored. Clin Sci 107: 1-11.
11. Chappell AS, Bilyeu KD (2006) A GmFAD3A mutation in the low linolenic acid soybean mutant C1640. Plant Breed 125: 535-536.
12. Chappell AS, Bilyeu KD (2007) The low linolenic acid soybean line PI361088B contains a novel mutation. Crop Sci 47: 1705-1710.
13. Clark KJ, Makrides M, Neumann MA, Gibson RA (1992) Determination of the optimal ratio of linoleic acid to α-linolenic acid in infant formulas. J Pediatr 120: 151-158.
14. Dhakal KH, Lee JD, Jeong YS, Kim HS, Shannon G, Hwang YH (2013) Stability of linolenic acid in seed oil of soybean accessions with elevated linolenic acid concentration. J Food Agric Environ 11: 80-85.
15. Diers BW, Shoemaker RC (1992) Restriction fragment length polymorphism analysis of soybean fatty acid content. J Am Oil Chem Soc 69: 1242-1244.
16. Dutton H, Lancaster C, Evans C, Cowan J (1951) The flavor problem of soybean oil. VIII. Linolenic acid. J Am Oil Chem Soc 28: 115.
17. Fan JB, Gunderson KL, Bibikova M, Yeakley JM, Chen J, Wickham Garcia E, Lebruska LL, Laurent M, Shen R, Barker D (2006) Illumina universal bead arrays. Methods Enzymol 410: 57-73.
18. Friesen RW, Innis SM (2010) Linoleic acid is associated with lower long-chain n-6 and n-3 fatty acids in red blood cell lipids of Canadian pregnant women. Am J Clin Nutr 91: 23-31.
19. Ha BK, Vuong TD, Velusamy V, Nguyen HT, Shannon G, Lee JD (2013) Genetic mapping of quantitative trait loci conditioning salt tolerance in wild soybean (Glycine soja) PI483463. Euphytica 193: 79-88.
20. Han SN, Lichtenstein AH, Ausman LM, Meydani SN (2012) Novel soybean oils differing in fatty acid composition alter immune functions of moderately hypercholesterolemic older adults. J Nutr 142: 2182-2187.
21. Hanson HL, Robinson HF, Comstock RE (1956) Biometrical studies of yield in segregating populations of Korean Lespodeza. Agron J 48: 268-272.
22. Hudson K (2012) Soybean oil-quality variants identified by largescale mutagenesis. Int J Agron. doi: 10. 1155/2012/569817.
23. Hyten D, Song Q, Choi I-Y, Yoon M-S, Specht J, Matukumalli L, Nelson R, Shoemaker R, Young N, Cregan P (2008) High-throughput genotyping with the GoldenGate assay in the complex genome of soybean. Theor Appl Genet 116: 945-952.
24. Hyten DL, Choi I-Y, Song Q, Specht JE, Carter TE, Shoemaker RC, Hwang E-Y, Matukumalli LK, Cregan PB (2010) A high density integrated genetic linkage map of soybean and the development of a 1, 536 Universal Soy Linkage Panel for QTL mapping. Crop Sci 50: 960-968.
25. Jakobsen MU, O'Reilly EJ, Heitmann BL, Pereira MA, Bälter K, Fraser GE, Goldbourt U, Hallmans G, Knekt P, Liu S, Pietinen P, Spiegelman D, Stevens J, Virtamo J, Willett WC, Ascherio A (2009) Major types of dietary fat and risk of coronary heart disease: a pooled analysis of 11 cohort studies. Am J Clin Nutr 89: 1425-1432.
26. Jeffrey B, Weisinger H, Neuringer M, Mitchell D (2001) The role of docosahexaenoic acid in retinal function. Lipids 36: 859-871.
27. Kim MY, Lee SH, Van KJ, Kim TH, Jeong SC, Choi IY, Kim DS, Lee YS, Park DU, Ma JX, Kim WY, Kim BC, Park SJ, Lee KA, Kim DH, Kim KH, Shin JH, Jang YE, Kim KD, Liu WX, Chaisan T, Kang YJ, Lee YH, Kim KH, Moon JK, Schmutz J, Jackson SA, Bhak J, Lee SH (2010) Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome. Proc Natl Acad Sci USA 107: 22032-22037.
28. Kim HJ, Xing GN, Wang YF, Zhao TJ, Yu DY, Yang SP, Li Y, Chen SY, Palmer RG, Gai JY (2014) Constitution of resistance to common cutworm in terms of antibiosis and antixenosis in soybean RIL populations. Euphytica 196: 137-154.
29. Kosambi DD (1944) The estimation of map distances from recombination values. Ann Eugen 12: 172-175.
30. Kris-Etherton PM, Harris WS, Appel LJ (2002) Fish consumption, fish oil, omega-3 fatty acids, and cardiovascular disease. Circulation 106: 2747-2757.
31. Lam HM, Xu X, Xin Liu, Chen WB, Yang GH, Wong FL, Li MW, He WM, Qin N, Wang B, Li J, Jian M, Wang J, Shao GH, Wang J, Samuel SMS, Zhang GY (2010) Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection. Nat Genet 42: 1053-1059.
32. Lee JD, Bilyeu KD, Grover SJ (2007) Genetics and breeding for modified fatty acid profile in soybean seed oil. J Crop Sci Biotech 10: 201-210.
33. Lee JD, Woolard M, Sleper DA, Smith JR, Pantalone VR, Nyinyi CN, Cardinal A, Shannon JG (2009) Environmental effects on oleic acid in soybean seed oil of plant introductions with elevated oleic concentration. Crop Sci 49: 1762-1768.
34. Lee JD, Bilyeu KD, Pantalone VR, Gillen AM, So YS, Shannon JG (2012) Environmental stability of oleic acid concentration in seed oil for soybean lines with FAD2-1A and FAD2-1B mutant genes. Crop Sci 52: 1290-1297.
35. Liu HL, Yin ZJ, Xiao L, Xu YN, Qu LQ (2012) Identification and evaluation of ω-3 fatty acid desaturase genes for hyperfortifying α-linolenic acid in transgenic rice seed. J Exp Bot 63: 3279-3287.
36. Lucas M, Mirzaei F, O'Reilly EJ, Pan A, Willett WC, Kawachi I, Koenen K, Ascherio A (2011) Dietary intake of n-3 and n-6 fatty acids and the risk of clinical depression in women: a 10-y prospective follow-up study. Am J Clin Nutr 93: 1337-1343.
37. Manly KF, Cudmore JRH, Meer JM (2001) Map Manager QTX, cross-platform software for genetic mapping. Mamm Genome 12: 930-932.
38. Mattson FH, Grundy SM (1985) Comparison of effects of dietary saturated, monounsaturated, and polyunsaturated fatty acids on plasma lipids and lipoproteins in man. J Lipid Res 26: 194-202.
39. Pantalone VR, Rebetzke GJ, Burton JW, Wilson RF (1997a) Genetic regulation of linolenic acid concentration in wild soybean Glycine soja accessions. J Am Oil Chem Soc 74: 159-163.
40. Pantalone VR, Rebetzke GJ, Wilson RF, Burton JW (1997b) Relationship between seed mass and linolenic acid in progeny of crosses between cultivated and wild soybean. J Am Oil Chem Soc 74: 563-568.
41. Rahman SM, Takagi Y, Towata S (1994) Inheritance of high linolenic acid content in the soybean mutant line B739. Breed Sci 44: 267-270.
42. Rao S, Abdel-Reheem M, Bhella R, McCracken C, Hildebrand D (2008) Characteristics of high α-linolenic acid accumulation in seed oils. Lipids 43: 749-755.
43. Shibata M, Takayama K, Ujiie A, Yamada T, Abe J, Kitamura K (2008) Genetic relationship between lipid content and linolenic acid concentration in soybean seeds. Breed Sci 58: 361-366.
44. Simopoulos AP (2002) The importance of the ratio of omega-6/omega-3 essential fatty acids. Biomed Pharmacother 56: 365-379.
45. Simopoulos AP (2008) The importance of the omega-6/omega-3 fatty acid ratio in cardiovascular disease and other chronic diseases. Exp Biol Med 233: 674-688.
46. Smouse TH (1979) A review of soybean oil reversion flavor. J Am Oil Chem Soc 56: 747-751.
47. Song QJ, Marek LF, Shoemaker RC, Lark KG, Concibido VC, Delannay X, Specht JE, Cregan PB (2004) A new integrated genetic linkage map of the soybean. Theor Appl Genet 109: 122-128.
48. Thiébaut ACM, Chajès V, Gerber M, Boutron-Ruault M-C, Joulin V, Lenoir G, Berrino F, Riboli E, Bénichou J, Clavel-Chapelon F (2009) Dietary intakes of ω-6 and ω-3 polyunsaturated fatty acids and the risk of breast cancer. Int J Cancer 124: 924-931.
49. Voorrips RE (2002) MapChart: software for the graphical presentation of the linkage maps and QTLs. J Hered 93: 77-78.
50. Vuong TD, Sleper DA, Shannon JG, Nguyen HT (2010) Novel quantitative trait loci for broad-based resistance to soybean cyst nematode (Heterodera glycines Ichinohe) in soybean PI 567516C. Theor Appl Genet 121: 1253-1266.
51. Wang S, Basten CJ, Zeng ZB (2011) Windows QTL Cartographer 2. 5. Department of Statistics, North Carolina State University, Raleigh.
52. Wang XZ, Jiang GL, Green M, Scott RA, Hyten DL, Cregan PB (2014) QTL analysis of unsaturated fatty acids in a recombinant inbred population of soybean. Mol breed 33: 281-296.
53. Williams CD, Whitley BM, Hoyo C, Grant DJ, Iraggi JD, Newman KA, Gerber L, Taylor LA, McKeever MG, Freedland SJ (2011) A high ratio of dietary n-6/n-3 polyunsaturated fatty acids is associated with increased risk of prostate cancer. Nutr Res 31: 1-8.
54. Wilson RF (2004) Seed composition. In: Boerma HR, Specht J (eds) Soybeans: improvement, production, and uses, 3rd edn. ASACSSA-SSSA, Madison, pp 621-677.
55. Xing GN, Zhou B, Wang YF, Zhao TJ, Yu DY, Chen SY, Gai JY (2012) Genetic components and major QTL confer resistance to bean pyralid (Lamprosema indicata Fabricius) under multiple environments in four RIL populations of soybean. Theor Appl Genet 125: 859-875.
56. Yang J, Hu C, Hu H, Yu R, Xia Z, Ye X, Zhu J (2008) QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations. Bioinformatics 24: 721-723.